Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003049

Physical Location & Seq

Genomic Coordinates Forward (+)

22809658 .. 22815671

Gene Structure 6014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56082

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAAGCAGGAAGCGACCATAGTTTACCAAATTTAGCACTCAGGAGAGGTGAAGAGCATTCTTTTATTCTTAAACCAGCAACAACCCTGTGGAAGAATTTCAAGACTGGTGGTGATAGAAGCACTCAACAATCACTAGCACAGGCTGGAAAGGCTGGAAATGCAGCATCAAGTTCACGTCTAGCATTGAAGACCGCTGAAGGAAAAAGGGTTGCTTCAACTGCTGGCGAGTATGCAATTATGGTATCCTGTCGGTGCAACTACACGGAGTCAAGATTGTTTTTTAAACAGTTAACAAGTTGGCGACCGCGTATTTCAAGGGATCTTATGATATCTATTGCGTCTGAAATGTCTGGACAATCTAGTGCACCAAATGCTGGAGTCTCCCAACTTCCTGTTCAGGTCTTAACTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

14.89

Weight (kDa)

9.93

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17900 AT3G17900
fragaria_vesca	FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960
malus_domestica	MD13G1079000.v1.1 MD16G1078700.v1.1
prunus_persica	Prupe.1G267800_v2.0.a1 Prupe.1G267800_v2.0.a1
pyrus_communis	pycom13g06860 pycom16g06810
rosa_chinensis	RchiOBHm_Chr1g0331861 RchiOBHm_Chr1g0331881 RchiOBHm_Chr1g0353921 RchiOBHm_Chr4g0440641
rosa_laevigata	RLG00000006164 RLG00000029707
rosa_multiflora	Rmu_co8243009.1_g000001 Rmu_sc0001915.1_g000004 Rmu_sc0005552.1_g000001 Rmu_sc0007658.1_g000002 Rmu_sc0008018.1_g000005
rosa_roxburghii	Rroxscaffold_4G00301470 Rroxscaffold_5G00381450
rosa_rugosa	Rorug01G0239400 Rorug04G0327100
rosa_samantha	Rh1AG250900 Rh1BG221700 Rh1CG234700 Rh1DG248700 Rh4AG379000 Rh4BG391800 Rh4CG406300
rosa_wichuraiana	Rw1G021890 Rw4G032550 Rw4G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccII	CGCG	1 cut(s)	310
AciI	CCGC	2 cut(s)	195, 308
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	31, 97
AcuI	CTGAAG	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	103, 190, 219, 318
AjiI	CACGTC	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	1 cut(s)	388
Alw44I	GTGCAC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	330
ApaLI	GTGCAC	1 cut(s)	366
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	2 cut(s)	31, 97
Asp700I	GAANNNNTTC	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	62, 125
BaeGI	GKGCMC	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	3 cut(s)	137, 182, 363
BfuI	GTATCC	1 cut(s)	256
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmgBI	CACGTC	1 cut(s)	179
BmsI	GCATC	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	310
Bsh1285I	CGRYCG	1 cut(s)	308
BsiEI	CGRYCG	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	1 cut(s)	388
BsmI	GAATGC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	2 cut(s)	195, 308
BspCNI	CTCAG	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	310
BspPI	GGATC	1 cut(s)	330
BspQI	GCTCTTC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	41
BstFNI	CGCG	1 cut(s)	310
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	322
BstMCI	CGRYCG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 161, 221, 374
BstSLI	GKGCMC	1 cut(s)	370
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuI	GTATCC	1 cut(s)	256
BtrI	CACGTC	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	226
CseI	GACGC	1 cut(s)	330
CspCI	CAANNNNNGTGG	2 cut(s)	91, 126
CviJI	RGCY	2 cut(s)	146, 155
CviKI_1	RGCY	2 cut(s)	146, 155
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
DraI	TTTAAA	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	219
EcoRV	GATATC	1 cut(s)	333
FaiI	YATR	4 cut(s)	21, 234, 242, 329
FalI	AAGNNNNNCTT	2 cut(s)	199, 231
Fnu4HI	GCNGC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	3 cut(s)	137, 182, 363
GluI	GCNGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	269, 381
HpaI	GTTAAC	1 cut(s)	294
HphI	GGTGA	2 cut(s)	62, 125
Hpy166II	GTNNAC	4 cut(s)	26, 176, 294, 368
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	4 cut(s)	43, 103, 273, 354
Hpy8I	GTNNAC	4 cut(s)	26, 176, 294, 368
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	164, 236, 258, 368
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 161, 221, 374
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	178
KspAI	GTTAAC	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	322
LguI	GCTCTTC	1 cut(s)	48
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	3 cut(s)	137, 182, 363
MaeII	ACGT	1 cut(s)	178
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	3 cut(s)	65, 106, 202
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	3 cut(s)	31, 97, 237
MlyI	GAGTC	2 cut(s)	278, 390
MnlI	CCTC	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	4 cut(s)	72, 285, 293, 407
MspA1I	CMGCKG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	58
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	4 cut(s)	152, 161, 221, 374
NdeII	GATC	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	48
PctI	GAATGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	2 cut(s)	277, 389
PpsI	GAGTC	2 cut(s)	277, 389
PsuI	RGATCY	1 cut(s)	322
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	4 cut(s)	72, 285, 293, 407
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	322
SchI	GAGTC	2 cut(s)	278, 390
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	3 cut(s)	52, 181, 405
SfaNI	GCATC	1 cut(s)	176
Sse9I	AATT	3 cut(s)	31, 97, 237
SsiI	CCGC	2 cut(s)	195, 308
SspMI	CTAG	3 cut(s)	137, 182, 363
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	1 cut(s)	181
TasI	AATT	3 cut(s)	31, 97, 237
Tru1I	TTAA	4 cut(s)	72, 285, 293, 407
Tru9I	TTAA	4 cut(s)	72, 285, 293, 407
TseI	GCWGC	1 cut(s)	164
TspGWI	ACGGA	1 cut(s)	281
Van91I	CCANNNNNTGG	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	366
XapI	RAATTY	2 cut(s)	31, 97
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	3 cut(s)	137, 182, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.