Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008097

Physical Location & Seq

Genomic Coordinates Forward (+)

6223125 .. 6225403

Gene Structure 2279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18165.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCGACGAACAATGGTGATGTCTTGATGTTGGAGGCGACGCCGGAGGCTGCGAGGCCCTGGGCTAGTGCGGCGAATGCAGAAGTTATCGATGCGCTTCCTTATATAGACGACGACTATGGCAATCCATTGATTAAGTCGGAGGTAGACCGTTTGGTGGAGGAAGAGATGCGTCGGAGCTCTAAGAAGCCAGCTGACTTTCTAAAGGACTTGCCTCCTCTTCCGAAGTTCGATTTTAAGAACTGCCCTGTTCTTGGCAAAGAGTATGAGCGTGTTAGAGCTGGGAAGCCTCCTGTGCGGATAGATTTCGAATCCCGATACAAACTTGAAATGCCACCTGCCAATAAGAGGAATGATGATGCTGCCTGGAAGCAGTATCTTCAGAAGAATCAACGGTCATTGCAACAGAAGCTGATTGAGCTTGAGAATTTGGAATTGATGTCAAAACTTGGCCCCGAGCTTTGGAGACAGAACAACCATCGCCTTGAAGTATTTTTGACCAGAATGCAAAGACTAGCACAGGAGCAGAATGAGGAAATTGAAAAAGTAAATCGGGAAAGGAAGTATCATCAGCAAACCACATCATACGAGCTCAATGCTCTATCTCAAGAATGGAGACAGCTCTGTGTTAAGAATATGGAGATTCAGTCTGCTTGTGCCATGCTTGAGACACAGATCGATTCGTTCAAGAAAGAAGCTGCTGAAAGGGGTTGGAACTTAGAAGAGAAACTAGAGAACGTCGAGCCACTTCAAATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009987 GO:0010204 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032991 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070013 GO:0071011 GO:0071013 GO:0080134 GO:0098542 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

BCAS2

Protein Analysis

253

Amino Acids

29.68

Weight (kDa)

5.32

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCAS2	PF05700	28 - 235	1.9e-65	Breast carcinoma amplified sequence 2 (BCAS2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18165
fragaria_vesca	FvH4_5g17030 FvH4_5g17030 FvH4_5g17030 FvH4_5g17030
malus_domestica	MD00G1160500.v1.1 MD14G1233600.v1.1
prunus_persica	Prupe.5G229800_v2.0.a1
pyrus_communis	pycom14g19460
rosa_chinensis	RchiOBHm_Chr7g0178821
rosa_laevigata	RLG00000005412 RLG00000032628
rosa_multiflora	Rmu_co8249681.1_g000001 Rmu_sc0015029.1_g000006 Rmu_sc0025325.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274550
rosa_rugosa	Rorug06G0420000 Rorug06G0420100
rosa_samantha	Rh1BG107100 Rh7AG019300 Rh7BG018800 Rh7CG019400 Rh7DG019200
rosa_wichuraiana	Rw7G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	346
Acc36I	ACCTGC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	2 cut(s)	71, 298
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	41
AfiI	CCNNNNNNNGG	4 cut(s)	157, 254, 348, 462
AgsI	TTSAA	5 cut(s)	329, 488, 542, 688, 752
AjnI	CCWGG	2 cut(s)	59, 365
AluBI	AGCT	9 cut(s)	180, 194, 281, 412, 421, 460, 592, 622, 698
AluI	AGCT	9 cut(s)	180, 194, 281, 412, 421, 460, 592, 622, 698
Alw21I	GWGCWC	2 cut(s)	182, 594
Alw26I	GTCTC	3 cut(s)	460, 610, 662
AlwNI	CAGNNNCTG	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	56, 451
ApeKI	GCWGC	3 cut(s)	50, 362, 698
ApoI	RAATTY	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	57, 452
AsuHPI	GGTGA	1 cut(s)	29
AsuII	TTCGAA	1 cut(s)	309
AvaI	CYCGRG	1 cut(s)	455
BanII	GRGCYC	2 cut(s)	182, 594
Bbv12I	GWGCWC	2 cut(s)	182, 594
BbvI	GCAGC	3 cut(s)	37, 349, 685
BccI	CCATC	1 cut(s)	486
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BciT130I	CCWGG	2 cut(s)	61, 367
BcoDI	GTCTC	3 cut(s)	460, 610, 662
BfaI	CTAG	3 cut(s)	66, 515, 731
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	4 cut(s)	51, 72, 363, 699
BlsI	GCNGC	4 cut(s)	52, 73, 364, 700
Bme1390I	CCNGG	2 cut(s)	61, 367
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	2 cut(s)	57, 452
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	2 cut(s)	61, 367
BmsI	GCATC	3 cut(s)	82, 159, 349
Bpu14I	TTCGAA	1 cut(s)	309
BpuEI	CTTGAG	3 cut(s)	443, 591, 686
Bsa29I	ATCGAT	2 cut(s)	90, 678
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	59, 60
BsaXI	ACNNNNNCTCC	2 cut(s)	632, 662
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 254, 348, 462
Bse3DI	GCAATG	1 cut(s)	398
BseBI	CCWGG	2 cut(s)	61, 367
BseCI	ATCGAT	2 cut(s)	90, 678
BseDI	CCNNGG	2 cut(s)	59, 60
BseLI	CCNNNNNNNGG	4 cut(s)	157, 254, 348, 462
BseMI	GCAATG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	3 cut(s)	37, 349, 685
BseYI	CCCAGC	1 cut(s)	281
BshFI	GGCC	2 cut(s)	58, 453
BshVI	ATCGAT	2 cut(s)	90, 678
BsiHKAI	GWGCWC	2 cut(s)	182, 594
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	4 cut(s)	157, 254, 348, 462
BsmAI	GTCTC	3 cut(s)	460, 610, 662
BsmI	GAATGC	2 cut(s)	82, 510
BsnI	GGCC	2 cut(s)	58, 453
BsoBI	CYCGRG	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	309
Bsp1286I	GDGCHC	2 cut(s)	182, 594
Bsp143I	GATC	1 cut(s)	675
BspACI	CCGC	2 cut(s)	71, 298
BspANI	GGCC	2 cut(s)	58, 453
BspDI	ATCGAT	2 cut(s)	90, 678
BspLI	GGNNCC	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	346
BspT104I	TTCGAA	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	59, 60
BssMI	GATC	1 cut(s)	675
BssNI	GRCGYC	1 cut(s)	41
Bst2UI	CCWGG	2 cut(s)	61, 367
Bst4CI	ACNGT	2 cut(s)	152, 396
Bst6I	CTCTTC	3 cut(s)	159, 225, 717
BstACI	GRCGYC	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	183, 718
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	1 cut(s)	678
BstMAI	GTCTC	3 cut(s)	460, 610, 662
BstMBI	GATC	1 cut(s)	675
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 77, 295, 409, 418
BstNI	CCWGG	2 cut(s)	61, 367
BstSCI	CCNGG	2 cut(s)	59, 365
BstV1I	GCAGC	3 cut(s)	37, 349, 685
Bsu15I	ATCGAT	2 cut(s)	90, 678
BsuRI	GGCC	2 cut(s)	58, 453
BsuTUI	ATCGAT	2 cut(s)	90, 678
BtgZI	GCGATG	1 cut(s)	464
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	412
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	57, 452
ClaI	ATCGAT	2 cut(s)	90, 678
CseI	GACGC	2 cut(s)	49, 161
CviAII	CATG	1 cut(s)	661
DdeI	CTNAG	2 cut(s)	183, 718
DpnI	GATC	1 cut(s)	677
DpnII	GATC	1 cut(s)	675
Eam1104I	CTCTTC	3 cut(s)	159, 225, 717
EarI	CTCTTC	3 cut(s)	159, 225, 717
Ecl136II	GAGCTC	2 cut(s)	180, 592
Eco24I	GRGCYC	2 cut(s)	182, 594
Eco53kI	GAGCTC	2 cut(s)	180, 592
Eco57I	CTGAAG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	455
EcoICRI	GAGCTC	2 cut(s)	180, 592
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	59, 365
EcoT38I	GRGCYC	2 cut(s)	182, 594
FaeI	CATG	1 cut(s)	664
FaiI	YATR	7 cut(s)	105, 107, 120, 267, 586, 638, 662
FatI	CATG	1 cut(s)	660
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	51, 72, 363, 699
FriOI	GRGCYC	2 cut(s)	182, 594
Fsp4HI	GCNGC	4 cut(s)	51, 72, 363, 699
FspBI	CTAG	3 cut(s)	66, 515, 731
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	4 cut(s)	51, 72, 363, 699
GsaI	CCCAGC	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	58, 453
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	2 cut(s)	49, 161
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	664
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	4 cut(s)	311, 388, 643, 680
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	4 cut(s)	142, 177, 225, 384
Hpy188III	TCNNGA	5 cut(s)	25, 315, 554, 608, 688
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	5 cut(s)	10, 43, 116, 177, 743
HpyCH4III	ACNGT	2 cut(s)	152, 396
HpyCH4IV	ACGT	1 cut(s)	738
HpyCH4V	TGCA	4 cut(s)	80, 403, 508, 757
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 77, 295, 409, 418
HpyF3I	CTNAG	2 cut(s)	183, 718
HpySE526I	ACGT	1 cut(s)	738
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	664
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	675
LmnI	GCTCC	2 cut(s)	177, 523
Lsp1109I	GCAGC	3 cut(s)	37, 349, 685
LweI	GCATC	3 cut(s)	82, 159, 349
MaeI	CTAG	3 cut(s)	66, 515, 731
MaeII	ACGT	1 cut(s)	738
MalI	GATC	1 cut(s)	677
MboI	GATC	1 cut(s)	675
MboII	GAAGA	5 cut(s)	176, 212, 371, 397, 734
MhlI	GDGCHC	2 cut(s)	182, 594
MluCI	AATT	3 cut(s)	427, 434, 537
MmeI	TCCRAC	4 cut(s)	12, 120, 155, 692
MseI	TTAA	3 cut(s)	135, 237, 630
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	61, 367
Mva1269I	GAATGC	2 cut(s)	82, 510
MvaI	CCWGG	2 cut(s)	61, 367
MwoI	GCNNNNNNNGC	5 cut(s)	71, 77, 295, 409, 418
NdeII	GATC	1 cut(s)	675
NlaIII	CATG	1 cut(s)	664
NlaIV	GGNNCC	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	309
PaqCI	CACCTGC	1 cut(s)	346
PasI	CCCWGGG	1 cut(s)	60
PctI	GAATGC	2 cut(s)	82, 510
PfeI	GAWTC	4 cut(s)	311, 388, 643, 680
PkrI	GCNGC	4 cut(s)	52, 73, 364, 700
Psp124BI	GAGCTC	2 cut(s)	182, 594
Psp6I	CCWGG	2 cut(s)	59, 365
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	2 cut(s)	59, 365
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	2 cut(s)	57, 452
PstNI	CAGNNNCTG	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	194
SacI	GAGCTC	2 cut(s)	182, 594
SaqAI	TTAA	3 cut(s)	135, 237, 630
SatI	GCNGC	4 cut(s)	51, 72, 363, 699
Sau3AI	GATC	1 cut(s)	675
Sau96I	GGNCC	2 cut(s)	57, 452
ScrFI	CCNGG	2 cut(s)	61, 367
SduI	GDGCHC	2 cut(s)	182, 594
SfaNI	GCATC	3 cut(s)	82, 159, 349
SfuI	TTCGAA	1 cut(s)	309
SmlI	CTYRAG	3 cut(s)	422, 606, 665
SmoI	CTYRAG	3 cut(s)	422, 606, 665
Sse9I	AATT	3 cut(s)	427, 434, 537
SsiI	CCGC	2 cut(s)	71, 298
SspMI	CTAG	3 cut(s)	66, 515, 731
SstI	GAGCTC	2 cut(s)	182, 594
StyD4I	CCNGG	2 cut(s)	59, 365
TaaI	ACNGT	2 cut(s)	152, 396
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	5 cut(s)	90, 231, 309, 678, 741
TasI	AATT	3 cut(s)	427, 434, 537
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	4 cut(s)	311, 388, 643, 680
Tru1I	TTAA	3 cut(s)	135, 237, 630
Tru9I	TTAA	3 cut(s)	135, 237, 630
TseI	GCWGC	3 cut(s)	50, 362, 698
XapI	RAATTY	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	3 cut(s)	66, 515, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.