Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015029.1

Orthogroup ID

OG0008097

Physical Location & Seq

Genomic Coordinates Forward (+)

26424 .. 28490

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015029.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggcggcggtgagcctcgtgctctctagacctggcagaggcaagatgacagcggcgtgggcatggagaggctgtgctttcgaggcatttgggctatgcgtcgtgggccgacgtcgtttgaccgaggggatcaggtctgagcagctggaggctccaatagtggcgttaggccgaaacaaacccgactcgggctgtgatggcgcatgtctccagcgatctatgaccgctgcaggagagcagagtcgggtctctgtagcgccggcggtggctgggccgggtttagggctggctggtgatgcaggcgacgaaaagctgcgggcaagaaccacttctggaaaaaccgataggaaaccctataggaggctcaaatctggagaggaagccaagaaaagcccgaggagcaacctattgccgaggttgttggctactgaggaggttgaagatgcggctcaccgttttccctctctcaaaatccccagactctccctccgattcctcacacagctcacagcaatggcgaacaccccctccaccgccagcaacgaaatcttaatgttagaagctccgccgcaaggtccatcgtggccgggccccttaaccaacgccgagatcatcgacgccttgccgtacatcgacgaagactactacgccggcgcagccgtcaagagagaggtcgacctcatggtggaggaagagctccgtcgcagcgccaaaaagcccgccgatttcctcaaagacttgcctccactcgccaagcccaatttcaagaataatccagttctggcgagagagtatgaccgcgtgagagcttccaagcctcccgtggttcttgatttctccagagataaagcggagatgccgaagaggactgatgaagctgcttggagacaggctcttcagaaagctcagtgcttttcgcagcacaatgtcgtcagattggagaatttggagctgatggataagtatggccctgacgcctggattcagtacaacaatgtattgcaatcgcttttgtcgaggtttgtttgccagtttttatataaagaagatggacttttggatttacttgatcatagtgaagcaactgattttgtagttctaagactagtagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009987 GO:0010204 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032991 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070013 GO:0071011 GO:0071013 GO:0080134 GO:0098542 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

BCAS2

Protein Analysis

371

Amino Acids

41.07

Weight (kDa)

8.79

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18165
fragaria_vesca	FvH4_5g17030 FvH4_5g17030 FvH4_5g17030 FvH4_5g17030
malus_domestica	MD00G1160500.v1.1 MD14G1233600.v1.1
prunus_persica	Prupe.5G229800_v2.0.a1
pyrus_communis	pycom14g19460
rosa_chinensis	RchiOBHm_Chr7g0178821
rosa_laevigata	RLG00000005412 RLG00000032628
rosa_multiflora	Rmu_co8249681.1_g000001 Rmu_sc0015029.1_g000006 Rmu_sc0025325.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274550
rosa_rugosa	Rorug06G0420000 Rorug06G0420100
rosa_samantha	Rh1BG107100 Rh7AG019300 Rh7BG018800 Rh7CG019400 Rh7DG019200
rosa_wichuraiana	Rw7G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	1 cut(s)	801
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	584
AcsI	RAATTY	1 cut(s)	943
AcuI	CTGAAG	1 cut(s)	881
AcyI	GRCGYC	3 cut(s)	112, 618, 975
AfaI	GTAC	2 cut(s)	629, 989
AfiI	CCNNNNNNNGG	6 cut(s)	38, 188, 281, 360, 572, 685
AgsI	TTSAA	2 cut(s)	440, 766
AhlI	ACTAGT	1 cut(s)	1105
AjnI	CCWGG	2 cut(s)	31, 977
AjuI	GAANNNNNNNTTGG	2 cut(s)	746, 778
AloI	GAACNNNNNNTCC	2 cut(s)	512, 544
AluBI	AGCT	9 cut(s)	145, 313, 505, 563, 697, 809, 878, 905, 952
AluI	AGCT	9 cut(s)	145, 313, 505, 563, 697, 809, 878, 905, 952
Alw21I	GWGCWC	2 cut(s)	24, 699
Alw26I	GTCTC	3 cut(s)	212, 253, 880
AlwI	GGATC	1 cut(s)	137
Ama87I	CYCGRG	2 cut(s)	187, 394
AoxI	GGCC	6 cut(s)	106, 169, 272, 584, 589, 967
ApaI	GGGCCC	1 cut(s)	593
ApeKI	GCWGC	7 cut(s)	142, 227, 313, 656, 705, 878, 919
ApoI	RAATTY	1 cut(s)	943
Asp700I	GAANNNNTTC	1 cut(s)	328
AspLEI	GCGC	4 cut(s)	203, 259, 656, 710
AspS9I	GGNCC	6 cut(s)	106, 272, 575, 589, 590, 968
AsuC2I	CCSGG	2 cut(s)	276, 588
AsuHPI	GGTGA	3 cut(s)	22, 305, 443
AvaI	CYCGRG	2 cut(s)	187, 394
AvaII	GGWCC	1 cut(s)	575
BaeGI	GKGCMC	1 cut(s)	593
BanII	GRGCYC	2 cut(s)	593, 699
BauI	CACGAG	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	645
Bbv12I	GWGCWC	2 cut(s)	24, 699
BbvI	GCAGC	7 cut(s)	154, 214, 300, 668, 717, 865, 931
BccI	CCATC	4 cut(s)	191, 586, 949, 1043
BceAI	ACGGC	2 cut(s)	610, 644
BciT130I	CCWGG	2 cut(s)	33, 979
BclI	TGATCA	1 cut(s)	1069
BcnI	CCSGG	2 cut(s)	276, 588
BcoDI	GTCTC	3 cut(s)	212, 253, 880
BcuI	ACTAGT	1 cut(s)	1105
BfaI	CTAG	2 cut(s)	27, 1106
BfmI	CTRYAG	3 cut(s)	228, 252, 355
BfoI	RGCGCY	2 cut(s)	260, 711
Bme1390I	CCNGG	4 cut(s)	33, 276, 588, 979
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	2 cut(s)	187, 394
BmgT120I	GGNCC	6 cut(s)	106, 272, 575, 589, 590, 968
BmiI	GGNNCC	3 cut(s)	153, 591, 592
BmrFI	CCNGG	4 cut(s)	33, 276, 588, 979
BmsI	GCATC	3 cut(s)	286, 433, 846
BpiI	GAAGAC	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	877, 909
BpmI	CTGGAG	4 cut(s)	167, 194, 393, 823
BpuMI	CCSGG	2 cut(s)	276, 588
BsaHI	GRCGYC	3 cut(s)	112, 618, 975
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	4 cut(s)	123, 395, 413, 822
BsaXI	ACNNNNNCTCC	6 cut(s)	58, 88, 471, 501, 512, 542
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 188, 281, 360, 572, 685
Bse118I	RCCGGY	2 cut(s)	259, 650
Bse1I	ACTGG	2 cut(s)	776, 1030
Bse3DI	GCAATG	1 cut(s)	519
BseBI	CCWGG	2 cut(s)	33, 979
BseDI	CCNNGG	4 cut(s)	123, 395, 413, 822
BseLI	CCNNNNNNNGG	6 cut(s)	38, 188, 281, 360, 572, 685
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	3 cut(s)	129, 420, 920
BseNI	ACTGG	2 cut(s)	776, 1030
BseRI	GAGGAG	2 cut(s)	412, 446
BseSI	GKGCMC	1 cut(s)	593
BseXI	GCAGC	7 cut(s)	154, 214, 300, 668, 717, 865, 931
BseYI	CCCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	801
BshFI	GGCC	6 cut(s)	108, 171, 274, 586, 591, 969
BsiHKAI	GWGCWC	2 cut(s)	24, 699
BsiHKCI	CYCGRG	2 cut(s)	187, 394
BsiSI	CCGG	4 cut(s)	260, 275, 587, 651
BslI	CCNNNNNNNGG	6 cut(s)	38, 188, 281, 360, 572, 685
BsmAI	GTCTC	3 cut(s)	212, 253, 880
BsnI	GGCC	6 cut(s)	108, 171, 274, 586, 591, 969
Bso31I	GGTCTC	1 cut(s)	253
BsoBI	CYCGRG	2 cut(s)	187, 394
Bsp120I	GGGCCC	1 cut(s)	589
Bsp1286I	GDGCHC	3 cut(s)	24, 593, 699
Bsp143I	GATC	4 cut(s)	129, 215, 609, 1069
BspANI	GGCC	6 cut(s)	108, 171, 274, 586, 591, 969
BspCNI	CTCAG	3 cut(s)	130, 421, 919
BspFNI	CGCG	1 cut(s)	801
BspLI	GGNNCC	3 cut(s)	153, 591, 592
BspMAI	CTGCAG	1 cut(s)	232
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	2 cut(s)	687, 900
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	2 cut(s)	259, 650
BsrI	ACTGG	2 cut(s)	776, 1030
BssAI	RCCGGY	2 cut(s)	259, 650
BssECI	CCNNGG	4 cut(s)	123, 395, 413, 822
BssMI	GATC	4 cut(s)	129, 215, 609, 1069
BssNI	GRCGYC	3 cut(s)	112, 618, 975
BssSI	CACGAG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	2 cut(s)	33, 979
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	3 cut(s)	687, 857, 900
BstACI	GRCGYC	3 cut(s)	112, 618, 975
BstC8I	GCNNGC	7 cut(s)	261, 288, 301, 318, 538, 652, 720
BstDEI	CTNAG	4 cut(s)	138, 429, 906, 1100
BstDSI	CCRYGG	1 cut(s)	822
BstENI	CCTNNNNNAGG	2 cut(s)	36, 358
BstFNI	CGCG	1 cut(s)	801
BstH2I	RGCGCY	2 cut(s)	260, 711
BstHHI	GCGC	4 cut(s)	203, 259, 656, 710
BstKTI	GATC	4 cut(s)	132, 218, 612, 1072
BstMAI	GTCTC	3 cut(s)	212, 253, 880
BstMBI	GATC	4 cut(s)	129, 215, 609, 1069
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 83, 105, 198, 296, 399, 656
BstNI	CCWGG	2 cut(s)	33, 979
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	4 cut(s)	31, 274, 586, 977
BstSFI	CTRYAG	3 cut(s)	228, 252, 355
BstSLI	GKGCMC	1 cut(s)	593
BstUI	CGCG	1 cut(s)	801
BstV1I	GCAGC	7 cut(s)	154, 214, 300, 668, 717, 865, 931
BstV2I	GAAGAC	1 cut(s)	645
BsuRI	GGCC	6 cut(s)	108, 171, 274, 586, 591, 969
BtgI	CCRYGG	1 cut(s)	822
BtsIMutI	CAGTG	1 cut(s)	914
Cac8I	GCNNGC	7 cut(s)	261, 288, 301, 318, 538, 652, 720
CfoI	GCGC	4 cut(s)	203, 259, 656, 710
Cfr10I	RCCGGY	2 cut(s)	259, 650
Cfr13I	GGNCC	6 cut(s)	106, 272, 575, 589, 590, 968
CseI	GACGC	3 cut(s)	88, 626, 983
Csp6I	GTAC	2 cut(s)	628, 988
CviAII	CATG	3 cut(s)	63, 204, 682
CviQI	GTAC	2 cut(s)	628, 988
DdeI	CTNAG	4 cut(s)	138, 429, 906, 1100
DpnI	GATC	4 cut(s)	131, 217, 611, 1071
DpnII	GATC	4 cut(s)	129, 215, 609, 1069
EaeI	YGGCCR	1 cut(s)	584
Eam1104I	CTCTTC	3 cut(s)	687, 857, 900
EarI	CTCTTC	3 cut(s)	687, 857, 900
EciI	GGCGGA	1 cut(s)	555
Ecl136II	GAGCTC	1 cut(s)	697
Eco24I	GRGCYC	2 cut(s)	593, 699
Eco31I	GGTCTC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	575
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	1 cut(s)	881
Eco88I	CYCGRG	2 cut(s)	187, 394
EcoICRI	GAGCTC	1 cut(s)	697
EcoNI	CCTNNNNNAGG	2 cut(s)	36, 358
EcoO109I	RGGNCCY	1 cut(s)	590
EcoRII	CCWGG	2 cut(s)	31, 977
EcoT38I	GRGCYC	2 cut(s)	593, 699
FaeI	CATG	3 cut(s)	66, 207, 685
FalI	AAGNNNNNCTT	4 cut(s)	313, 345, 1038, 1070
FatI	CATG	3 cut(s)	62, 203, 681
FauI	CCCGC	2 cut(s)	309, 727
FbaI	TGATCA	1 cut(s)	1069
FblI	GTMKAC	1 cut(s)	675
FriOI	GRGCYC	2 cut(s)	593, 699
FspBI	CTAG	2 cut(s)	27, 1106
GlaI	GCGC	4 cut(s)	202, 258, 655, 709
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	4 cut(s)	167, 194, 393, 823
HaeII	RGCGCY	2 cut(s)	260, 711
HaeIII	GGCC	6 cut(s)	108, 171, 274, 586, 591, 969
HapII	CCGG	4 cut(s)	260, 275, 587, 651
HgaI	GACGC	3 cut(s)	88, 626, 983
HhaI	GCGC	4 cut(s)	203, 259, 656, 710
Hin1I	GRCGYC	3 cut(s)	112, 618, 975
Hin1II	CATG	3 cut(s)	66, 207, 685
Hin6I	GCGC	4 cut(s)	201, 257, 654, 708
HinP1I	GCGC	4 cut(s)	201, 257, 654, 708
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	5 cut(s)	185, 241, 480, 492, 982
HpaII	CCGG	4 cut(s)	260, 275, 587, 651
HphI	GGTGA	3 cut(s)	22, 305, 443
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	4 cut(s)	139, 491, 900, 935
Hpy188III	TCNNGA	7 cut(s)	27, 333, 372, 664, 766, 830, 840
Hpy8I	GTNNAC	1 cut(s)	676
Hpy99I	CGWCG	7 cut(s)	104, 114, 117, 308, 620, 638, 705
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	3 cut(s)	230, 299, 1003
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 83, 105, 198, 296, 399, 656
HpyF3I	CTNAG	4 cut(s)	138, 429, 906, 1100
HpySE526I	ACGT	1 cut(s)	112
Hsp92I	GRCGYC	3 cut(s)	112, 618, 975
Hsp92II	CATG	3 cut(s)	66, 207, 685
HspAI	GCGC	4 cut(s)	201, 257, 654, 708
KroI	GCCGGC	2 cut(s)	259, 650
KroNI	GCCGGC	2 cut(s)	261, 652
Ksp22I	TGATCA	1 cut(s)	1069
Kzo9I	GATC	4 cut(s)	129, 215, 609, 1069
LguI	GCTCTTC	2 cut(s)	687, 900
LmnI	GCTCC	5 cut(s)	157, 399, 568, 702, 949
Lsp1109I	GCAGC	7 cut(s)	154, 214, 300, 668, 717, 865, 931
LweI	GCATC	3 cut(s)	286, 433, 846
MaeI	CTAG	2 cut(s)	27, 1106
MaeII	ACGT	1 cut(s)	112
MalI	GATC	4 cut(s)	131, 217, 611, 1071
MboI	GATC	4 cut(s)	129, 215, 609, 1069
MboII	GAAGA	6 cut(s)	452, 650, 704, 874, 887, 1058
MhlI	GDGCHC	3 cut(s)	24, 593, 699
MluCI	AATT	2 cut(s)	760, 943
MlyI	GAGTC	3 cut(s)	179, 250, 474
MreI	CGCCGGCG	2 cut(s)	259, 650
MroNI	GCCGGC	2 cut(s)	259, 650
MroXI	GAANNNNTTC	1 cut(s)	328
MseI	TTAA	2 cut(s)	551, 596
MslI	CAYNNNNRTG	1 cut(s)	512
MspA1I	CMGCKG	3 cut(s)	53, 145, 227
MspI	CCGG	4 cut(s)	260, 275, 587, 651
MspR9I	CCNGG	4 cut(s)	33, 276, 588, 979
MvaI	CCWGG	2 cut(s)	33, 979
MvnI	CGCG	1 cut(s)	801
MwoI	GCNNNNNNNGC	7 cut(s)	59, 83, 105, 198, 296, 399, 656
NaeI	GCCGGC	2 cut(s)	261, 652
NciI	CCSGG	2 cut(s)	276, 588
NdeII	GATC	4 cut(s)	129, 215, 609, 1069
NgoMIV	GCCGGC	2 cut(s)	259, 650
NlaIII	CATG	3 cut(s)	66, 207, 685
NlaIV	GGNNCC	3 cut(s)	153, 591, 592
NmeAIII	GCCGAG	2 cut(s)	438, 631
NspI	RCATGY	1 cut(s)	207
PciSI	GCTCTTC	2 cut(s)	687, 900
PcsI	WCGNNNNNNNCGW	1 cut(s)	1013
PdiI	GCCGGC	2 cut(s)	261, 652
PdmI	GAANNNNTTC	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	492, 982
PleI	GAGTC	3 cut(s)	179, 249, 474
PpsI	GAGTC	3 cut(s)	179, 249, 474
Psp124BI	GAGCTC	1 cut(s)	699
Psp6I	CCWGG	2 cut(s)	31, 977
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	31, 977
PspN4I	GGNNCC	3 cut(s)	153, 591, 592
PspOMI	GGGCCC	1 cut(s)	589
PspPI	GGNCC	6 cut(s)	106, 272, 575, 589, 590, 968
PstI	CTGCAG	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	2 cut(s)	629, 989
RsaNI	GTAC	2 cut(s)	628, 988
RseI	CAYNNNNRTG	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	699
SalI	GTCGAC	1 cut(s)	674
SapI	GCTCTTC	2 cut(s)	687, 900
SaqAI	TTAA	2 cut(s)	551, 596
Sau3AI	GATC	4 cut(s)	129, 215, 609, 1069
Sau96I	GGNCC	6 cut(s)	106, 272, 575, 589, 590, 968
SchI	GAGTC	3 cut(s)	179, 250, 474
ScrFI	CCNGG	4 cut(s)	33, 276, 588, 979
SduI	GDGCHC	3 cut(s)	24, 593, 699
SfaNI	GCATC	3 cut(s)	286, 433, 846
SfcI	CTRYAG	3 cut(s)	228, 252, 355
SgrAI	CRCCGGYG	2 cut(s)	259, 650
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	512
SpeI	ACTAGT	1 cut(s)	1105
Sse9I	AATT	2 cut(s)	760, 943
SspMI	CTAG	2 cut(s)	27, 1106
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	4 cut(s)	31, 274, 586, 977
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	5 cut(s)	81, 615, 633, 675, 1016
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	2 cut(s)	760, 943
TatI	WGTACW	1 cut(s)	987
TauI	GCSGC	4 cut(s)	8, 56, 449, 571
TfiI	GAWTC	2 cut(s)	492, 982
Tru1I	TTAA	2 cut(s)	551, 596
Tru9I	TTAA	2 cut(s)	551, 596
TscAI	CASTG	1 cut(s)	914
TseI	GCWGC	7 cut(s)	142, 227, 313, 656, 705, 878, 919
TspDTI	ATGAA	1 cut(s)	888
TspGWI	ACGGA	1 cut(s)	689
TspRI	CASTG	1 cut(s)	914
VpaK11BI	GGWCC	1 cut(s)	575
XagI	CCTNNNNNAGG	2 cut(s)	36, 358
XapI	RAATTY	1 cut(s)	943
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	1 cut(s)	207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	820
XmiI	GTMKAC	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	328
XspI	CTAG	2 cut(s)	27, 1106
ZraI	GACGTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.