Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008097

Physical Location & Seq

Genomic Coordinates Reverse (-)

31363510 .. 31367317

Gene Structure 3808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1233600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCGGACACCAACGGCAACGGCGGCAGCCATGACGTTCTGATGCTGGAAGCTCCGCCGCCGGAAGGTCCGGCATGGCCAGGACCTCTAACCAACGCTGAAACCATTGACGCCTTGCCCTACATCGACGACGACTACGCCAACCCCGACGTCAAGCGCGAGGTCGACCGCATGGTGGAGGAGGAGTTGCGGCGCAGCGCCAAGAAGCCCGCCGATTTCCTCAAGGAGTTGCCGCCTCTTCCCAAGCCCAAATTCAAGGATCATCCGATGCTGGCTAGGGAGTACGAACGGGTGAGAGCATCGAGGCCTCCGGTGGCGATTGATTTTTCGAGAGACAAAGTGGAGCCGCCGCCGGTGAATAAAATGAATGATGAAACTGCTTGGAAGCTTGCTCTCCAAAAAGCTCAGTGCTCTCTGCAGCACCAAGCCGTCAGGTTGGAGAATTTGGAGCTGATTGACAAGTATGGTCCTGATGCCTGGATTCAGAACAACAATAGATTGCAATCGATTTTGTCGAGGATGCAGAAATTAGCTCAGGAGCAATATCAAAATATCGAAACAGTGAATCGTGAAAGGAAACATCATCAGCAAACCACTGCGTATGAGCTTAATGCTCTGGCTGCTCAATGGAAGGAGCTCTGTCAGAAGAATATAGAAATTCAATCTGCCTGTGTTAAACTTGAAAGCCATCTTGAAGAATTAAGGAGGGAAGCGGCCAAAAGGCTGGACCTTGGATGCCAATGCAGTAAATGGTTCTTTATTGACTGCCGAATGAGAAGGATTTGGATGAAGACCCGGCAGAAATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009987 GO:0010204 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032991 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070013 GO:0071011 GO:0071013 GO:0080134 GO:0098542 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

BCAS2

Protein Analysis

270

Amino Acids

31.24

Weight (kDa)

7.62

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCAS2	PF05700	34 - 240	1e-68	Breast carcinoma amplified sequence 2 (BCAS2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18165
fragaria_vesca	FvH4_5g17030 FvH4_5g17030 FvH4_5g17030 FvH4_5g17030
malus_domestica	MD00G1160500.v1.1 MD14G1233600.v1.1
prunus_persica	Prupe.5G229800_v2.0.a1
pyrus_communis	pycom14g19460
rosa_chinensis	RchiOBHm_Chr7g0178821
rosa_laevigata	RLG00000005412 RLG00000032628
rosa_multiflora	Rmu_co8249681.1_g000001 Rmu_sc0015029.1_g000006 Rmu_sc0025325.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274550
rosa_rugosa	Rorug06G0420000 Rorug06G0420100
rosa_samantha	Rh1BG107100 Rh7AG019300 Rh7BG018800 Rh7CG019400 Rh7DG019200
rosa_wichuraiana	Rw7G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	159
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	2 cut(s)	77, 714
AcsI	RAATTY	3 cut(s)	251, 442, 657
AcyI	GRCGYC	2 cut(s)	111, 150
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	65, 175
AgsI	TTSAA	4 cut(s)	256, 662, 683, 695
AjnI	CCWGG	2 cut(s)	79, 476
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	7 cut(s)	53, 388, 404, 451, 533, 607, 637
AluI	AGCT	7 cut(s)	53, 388, 404, 451, 533, 607, 637
Alw21I	GWGCWC	2 cut(s)	413, 639
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	3 cut(s)	77, 305, 714
ApeKI	GCWGC	4 cut(s)	27, 195, 418, 620
ApoI	RAATTY	3 cut(s)	251, 442, 657
AspLEI	GCGC	3 cut(s)	159, 195, 200
AspS9I	GGNCC	4 cut(s)	68, 83, 467, 727
AsuC2I	CCSGG	1 cut(s)	796
AsuHPI	GGTGA	2 cut(s)	304, 367
AvaII	GGWCC	4 cut(s)	68, 83, 467, 727
BalI	TGGCCA	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	797
Bbv12I	GWGCWC	2 cut(s)	413, 639
BbvI	GCAGC	4 cut(s)	39, 207, 430, 607
BccI	CCATC	1 cut(s)	696
BceAI	ACGGC	3 cut(s)	31, 37, 413
BciT130I	CCWGG	2 cut(s)	81, 478
BcnI	CCSGG	1 cut(s)	796
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	416
BfoI	RGCGCY	1 cut(s)	201
Bme1390I	CCNGG	3 cut(s)	81, 478, 796
Bme18I	GGWCC	4 cut(s)	68, 83, 467, 727
BmgT120I	GGNCC	4 cut(s)	68, 83, 467, 727
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	3 cut(s)	81, 478, 796
BmsI	GCATC	6 cut(s)	33, 258, 308, 463, 510, 725
BpiI	GAAGAC	1 cut(s)	797
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	796
Bsa29I	ATCGAT	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	502
BsaHI	GRCGYC	2 cut(s)	111, 150
BsaJI	CCNNGG	1 cut(s)	730
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 175
Bse118I	RCCGGY	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	502
BseBI	CCWGG	2 cut(s)	81, 478
BseCI	ATCGAT	1 cut(s)	506
BseDI	CCNNGG	1 cut(s)	730
BseGI	GGATG	4 cut(s)	262, 525, 740, 792
BseJI	GATNNNNATC	1 cut(s)	502
BseLI	CCNNNNNNNGG	2 cut(s)	65, 175
BseMII	CTCAG	2 cut(s)	419, 548
BseRI	GAGGAG	2 cut(s)	194, 197
BseXI	GCAGC	4 cut(s)	39, 207, 430, 607
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	3 cut(s)	79, 307, 716
BshVI	ATCGAT	1 cut(s)	506
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	413, 639
BsiSI	CCGG	5 cut(s)	62, 71, 311, 353, 796
BslI	CCNNNNNNNGG	2 cut(s)	65, 175
BsmAI	GTCTC	1 cut(s)	327
BsnI	GGCC	3 cut(s)	79, 307, 716
Bsp1286I	GDGCHC	2 cut(s)	413, 639
Bsp143I	GATC	1 cut(s)	259
BspANI	GGCC	3 cut(s)	79, 307, 716
BspCNI	CTCAG	2 cut(s)	418, 547
BspDI	ATCGAT	1 cut(s)	506
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	345
BspMAI	CTGCAG	1 cut(s)	420
BspPI	GGATC	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	2 cut(s)	111, 150
BssT1I	CCWWGG	1 cut(s)	730
Bst2UI	CCWGG	2 cut(s)	81, 478
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	2 cut(s)	111, 150
BstC8I	GCNNGC	3 cut(s)	210, 273, 390
BstDEI	CTNAG	2 cut(s)	405, 534
BstF5I	GGATG	4 cut(s)	262, 525, 740, 792
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	3 cut(s)	159, 195, 200
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	259
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 620
BstNI	CCWGG	2 cut(s)	81, 478
BstSCI	CCNGG	3 cut(s)	79, 476, 794
BstSFI	CTRYAG	1 cut(s)	416
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	4 cut(s)	39, 207, 430, 607
BstV2I	GAAGAC	1 cut(s)	797
BstXI	CCANNNNNNTGG	1 cut(s)	724
Bsu15I	ATCGAT	1 cut(s)	506
BsuRI	GGCC	3 cut(s)	79, 307, 716
BsuTUI	ATCGAT	1 cut(s)	506
BtsCI	GGATG	4 cut(s)	262, 525, 740, 792
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	3 cut(s)	413, 567, 594
Cac8I	GCNNGC	3 cut(s)	210, 273, 390
CfoI	GCGC	3 cut(s)	159, 195, 200
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	4 cut(s)	68, 83, 467, 727
ClaI	ATCGAT	1 cut(s)	506
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	3 cut(s)	32, 75, 172
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	2 cut(s)	405, 534
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	2 cut(s)	77, 714
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EciI	GGCGGA	2 cut(s)	20, 45
Ecl136II	GAGCTC	1 cut(s)	637
Eco130I	CCWWGG	1 cut(s)	730
Eco147I	AGGCCT	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	639
Eco47I	GGWCC	4 cut(s)	68, 83, 467, 727
Eco53kI	GAGCTC	1 cut(s)	637
EcoICRI	GAGCTC	1 cut(s)	637
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	79, 476
EcoT14I	CCWWGG	1 cut(s)	730
EcoT38I	GRGCYC	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	3 cut(s)	35, 78, 175
FaiI	YATR	6 cut(s)	33, 76, 173, 465, 603, 653
FatI	CATG	3 cut(s)	31, 74, 171
FauI	CCCGC	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	165
FokI	GGATG	4 cut(s)	249, 532, 747, 799
FriOI	GRGCYC	1 cut(s)	639
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	3 cut(s)	158, 194, 199
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	3 cut(s)	79, 307, 716
HapII	CCGG	5 cut(s)	62, 71, 311, 353, 796
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	3 cut(s)	159, 195, 200
Hin1I	GRCGYC	2 cut(s)	111, 150
Hin1II	CATG	3 cut(s)	35, 78, 175
Hin6I	GCGC	3 cut(s)	157, 193, 198
HinP1I	GCGC	3 cut(s)	157, 193, 198
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	2 cut(s)	481, 565
HpaII	CCGG	5 cut(s)	62, 71, 311, 353, 796
HphI	GGTGA	2 cut(s)	304, 367
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	4 cut(s)	42, 267, 486, 645
Hpy188III	TCNNGA	6 cut(s)	330, 470, 536, 569, 692, 807
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	3 cut(s)	131, 134, 152
HpyAV	CCTTC	3 cut(s)	59, 625, 771
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4IV	ACGT	2 cut(s)	36, 150
HpyCH4V	TGCA	4 cut(s)	418, 502, 523, 744
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 620
HpyF3I	CTNAG	2 cut(s)	405, 534
HpySE526I	ACGT	2 cut(s)	36, 150
Hsp92I	GRCGYC	2 cut(s)	111, 150
Hsp92II	CATG	3 cut(s)	35, 78, 175
HspAI	GCGC	3 cut(s)	157, 193, 198
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	5 cut(s)	58, 343, 448, 538, 634
Lsp1109I	GCAGC	4 cut(s)	39, 207, 430, 607
LweI	GCATC	6 cut(s)	33, 258, 308, 463, 510, 725
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	2 cut(s)	36, 150
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	4 cut(s)	230, 658, 707, 802
MhlI	GDGCHC	2 cut(s)	413, 639
MlsI	TGGCCA	1 cut(s)	79
MluCI	AATT	5 cut(s)	251, 442, 527, 657, 698
MluNI	TGGCCA	1 cut(s)	79
MmeI	TCCRAC	1 cut(s)	417
Mox20I	TGGCCA	1 cut(s)	79
MscI	TGGCCA	1 cut(s)	79
MseI	TTAA	3 cut(s)	609, 675, 701
Msp20I	TGGCCA	1 cut(s)	79
MspI	CCGG	5 cut(s)	62, 71, 311, 353, 796
MspR9I	CCNGG	3 cut(s)	81, 478, 796
MteI	GCGCNGCGC	1 cut(s)	196
MvaI	CCWGG	2 cut(s)	81, 478
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	24, 620
NciI	CCSGG	1 cut(s)	796
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	3 cut(s)	35, 78, 175
NlaIV	GGNNCC	1 cut(s)	345
PceI	AGGCCT	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 156, 512
PfeI	GAWTC	2 cut(s)	481, 565
PpuMI	RGGWCCY	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	639
Psp5II	RGGWCCY	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	79, 476
PspGI	CCWGG	2 cut(s)	79, 476
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	4 cut(s)	68, 83, 467, 727
PspPPI	RGGWCCY	1 cut(s)	83
PstI	CTGCAG	1 cut(s)	420
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SacI	GAGCTC	1 cut(s)	639
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	609, 675, 701
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	4 cut(s)	68, 83, 467, 727
ScrFI	CCNGG	3 cut(s)	81, 478, 796
SduI	GDGCHC	2 cut(s)	413, 639
SfaNI	GCATC	6 cut(s)	33, 258, 308, 463, 510, 725
SfcI	CTRYAG	1 cut(s)	416
SgrAI	CRCCGGYG	1 cut(s)	352
SinI	GGWCC	4 cut(s)	68, 83, 467, 727
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	5 cut(s)	251, 442, 527, 657, 698
SseBI	AGGCCT	1 cut(s)	307
SspMI	CTAG	1 cut(s)	276
SstI	GAGCTC	1 cut(s)	639
StuI	AGGCCT	1 cut(s)	307
StyD4I	CCNGG	3 cut(s)	79, 476, 794
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	1 cut(s)	562
TaiI	ACGT	2 cut(s)	39, 153
TaqI	TCGA	7 cut(s)	126, 165, 302, 329, 506, 515, 555
TasI	AATT	5 cut(s)	251, 442, 527, 657, 698
TauI	GCSGC	7 cut(s)	27, 61, 193, 235, 349, 352, 716
TfiI	GAWTC	2 cut(s)	481, 565
Tru1I	TTAA	3 cut(s)	609, 675, 701
Tru9I	TTAA	3 cut(s)	609, 675, 701
TscAI	CASTG	3 cut(s)	413, 567, 601
TseI	GCWGC	4 cut(s)	27, 195, 418, 620
TspDTI	ATGAA	3 cut(s)	380, 387, 803
TspRI	CASTG	3 cut(s)	413, 567, 601
VpaK11BI	GGWCC	4 cut(s)	68, 83, 467, 727
XapI	RAATTY	3 cut(s)	251, 442, 657
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	276
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.