Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008097

Physical Location & Seq

Genomic Coordinates Reverse (-)

9703851 .. 9706673

Gene Structure 2823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17030.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAATGTAAGGAAAGCCCATAACGCCAATATAACTAAACGTCGTCTAAAACGGGTCGGGTTCAAACGGCGCGCTTCAGCTCACCACTTTTCCCTCTCTCCCCAAAATCCCCAAAACTCTCTCCGGCACTCCCCACAGCTCACAGCAATGGCTAACGCCACCGCCACCGGCGCCGCCAGCAACGAAATCTTAATGTTAGAAGCTCCGCCGCAAGGCCCGTCGTGGCCTGGCCCCTTAACCAACGCCGAGATCATCGACGCCTTGCCGTACATCGACGAAGACTACTACTCCAGCGCCGCCGTCAAGAACGAAGTCGACCTCATGGTGGAGGAGGAGCTCCGTCGCAGCTCCAAAAAGCCTGCCGATTTCCTCAAAGACTTGCCTCCGCTCGCCAAGCCCGATTTCAAGAATAATCCAGTTCTGGCGAGAGAGTACGACCGCGTGAGAGCTTCAAAGCCTCCGGTGATTCTTGATTTCTCGAGAGATAAGGCGGAGATGCCGAAGAGGAGTGATGAAGCTGCTTGGAGGCAGGCTCTTCAGAAAGCTCAGTGCTATTCGCAGCACAATGTCATCAGGTTGGAGAATTTGGAGCTGATGGATAAGTATGGCCCTGACGCCTGGATTAAGTACAACAATGTTTTGCAATCGCTTTTGTCAAGATTGCAGAAATTAACTCATGAGCGCTCTCAAATGATTGGAACTGTGAATCGTGAAAGGAAAGAACATCAGCAAAACACTGCATATGAGCTTAATGCTTTGCACGCACAATGGAAGGAACTTTCTCTGAAGAACATAGAAATTCAAGCCGCGTGTGCTACTCTTGAGAATTGCATAGATGAACTCAAAAAGGAAGCAGCAGAGAGAGGCTGGGACTTCAGACCAACGGAGAATGGCTTGTTGAATTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009987 GO:0010204 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032991 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070013 GO:0071011 GO:0071013 GO:0080134 GO:0098542 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

BCAS2

Protein Analysis

304

Amino Acids

34.57

Weight (kDa)

8.81

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCAS2	PF05700	83 - 287	2e-59	Breast carcinoma amplified sequence 2 (BCAS2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18165
fragaria_vesca	FvH4_5g17030 FvH4_5g17030 FvH4_5g17030 FvH4_5g17030
malus_domestica	MD00G1160500.v1.1 MD14G1233600.v1.1
prunus_persica	Prupe.5G229800_v2.0.a1
pyrus_communis	pycom14g19460
rosa_chinensis	RchiOBHm_Chr7g0178821
rosa_laevigata	RLG00000005412 RLG00000032628
rosa_multiflora	Rmu_co8249681.1_g000001 Rmu_sc0015029.1_g000006 Rmu_sc0025325.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274550
rosa_rugosa	Rorug06G0420000 Rorug06G0420100
rosa_samantha	Rh1BG107100 Rh7AG019300 Rh7BG018800 Rh7CG019400 Rh7DG019200
rosa_wichuraiana	Rw7G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccBSI	CCGCTC	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	3 cut(s)	72, 441, 809
AciI	CCGC	9 cut(s)	162, 174, 206, 209, 297, 386, 439, 491, 807
AcsI	RAATTY	3 cut(s)	583, 798, 901
AcuI	CTGAAG	4 cut(s)	60, 521, 806, 859
AcyI	GRCGYC	3 cut(s)	171, 258, 615
AfaI	GTAC	3 cut(s)	269, 434, 629
AfeI	AGCGCT	1 cut(s)	683
AfiI	CCNNNNNNNGG	2 cut(s)	212, 325
AgsI	TTSAA	5 cut(s)	64, 406, 453, 803, 901
AjnI	CCWGG	2 cut(s)	226, 617
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
Alw21I	GWGCWC	1 cut(s)	339
Ama87I	CYCGRG	1 cut(s)	478
Aor51HI	AGCGCT	1 cut(s)	683
AoxI	GGCC	4 cut(s)	214, 224, 229, 607
ApeKI	GCWGC	4 cut(s)	345, 518, 559, 854
ApoI	RAATTY	3 cut(s)	583, 798, 901
AspLEI	GCGC	5 cut(s)	72, 74, 173, 296, 684
AspS9I	GGNCC	3 cut(s)	215, 230, 608
AsuHPI	GGTGA	2 cut(s)	74, 475
AvaI	CYCGRG	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	4 cut(s)	357, 505, 571, 866
BccI	CCATC	1 cut(s)	589
BceAI	ACGGC	3 cut(s)	83, 250, 284
BciT130I	CCWGG	2 cut(s)	228, 619
BfoI	RGCGCY	3 cut(s)	174, 297, 685
BisI	GCNGC	8 cut(s)	174, 209, 297, 346, 519, 560, 807, 855
BlsI	GCNGC	8 cut(s)	175, 210, 298, 347, 520, 561, 808, 856
Bme1390I	CCNGG	2 cut(s)	228, 619
BmeT110I	CYCGRG	1 cut(s)	478
BmgT120I	GGNCC	3 cut(s)	215, 230, 608
BmiI	GGNNCC	2 cut(s)	172, 232
BmrFI	CCNGG	2 cut(s)	228, 619
BmsI	GCATC	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	285
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
BpmI	CTGGAG	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	842
BsaHI	GRCGYC	3 cut(s)	171, 258, 615
BsaWI	WCCGGW	1 cut(s)	460
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 325
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	416
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	228, 619
BseLI	CCNNNNNNNGG	2 cut(s)	212, 325
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	416
BsePI	GCGCGC	1 cut(s)	70
BseRI	GAGGAG	3 cut(s)	344, 347, 520
BseXI	GCAGC	4 cut(s)	357, 505, 571, 866
BseYI	CCCAGC	1 cut(s)	867
Bsh1236I	CGCG	3 cut(s)	72, 441, 809
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	4 cut(s)	216, 226, 231, 609
BshNI	GGYRCC	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	3 cut(s)	124, 168, 461
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	2 cut(s)	212, 325
BsmFI	GGGAC	1 cut(s)	884
BsnI	GGCC	4 cut(s)	216, 226, 231, 609
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	249
BspACI	CCGC	9 cut(s)	162, 174, 206, 209, 297, 386, 439, 491, 807
BspANI	GGCC	4 cut(s)	216, 226, 231, 609
BspCNI	CTCAG	1 cut(s)	559
BspFNI	CGCG	3 cut(s)	72, 441, 809
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	2 cut(s)	172, 232
BspQI	GCTCTTC	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	416
BssAI	RCCGGY	1 cut(s)	167
BssHII	GCGCGC	1 cut(s)	70
BssMI	GATC	1 cut(s)	249
BssNI	GRCGYC	3 cut(s)	171, 258, 615
Bst2UI	CCWGG	2 cut(s)	228, 619
Bst4CI	ACNGT	1 cut(s)	703
Bst6I	CTCTTC	2 cut(s)	497, 540
BstACI	GRCGYC	3 cut(s)	171, 258, 615
BstC8I	GCNNGC	6 cut(s)	72, 178, 360, 390, 531, 762
BstDEI	CTNAG	1 cut(s)	546
BstFNI	CGCG	3 cut(s)	72, 441, 809
BstH2I	RGCGCY	3 cut(s)	174, 297, 685
BstHHI	GCGC	5 cut(s)	72, 74, 173, 296, 684
BstKTI	GATC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	249
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 170, 177, 394, 761, 812
BstNI	CCWGG	2 cut(s)	228, 619
BstSCI	CCNGG	2 cut(s)	226, 617
BstUI	CGCG	3 cut(s)	72, 441, 809
BstV1I	GCAGC	4 cut(s)	357, 505, 571, 866
BstV2I	GAAGAC	1 cut(s)	285
BsuRI	GGCC	4 cut(s)	216, 226, 231, 609
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	2 cut(s)	554, 735
Cac8I	GCNNGC	6 cut(s)	72, 178, 360, 390, 531, 762
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	5 cut(s)	72, 74, 173, 296, 684
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	215, 230, 608
CseI	GACGC	2 cut(s)	266, 623
Csp6I	GTAC	3 cut(s)	268, 433, 628
CviAII	CATG	2 cut(s)	322, 677
CviQI	GTAC	3 cut(s)	268, 433, 628
DdeI	CTNAG	1 cut(s)	546
DinI	GGCGCC	1 cut(s)	172
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
Eam1104I	CTCTTC	2 cut(s)	497, 540
EarI	CTCTTC	2 cut(s)	497, 540
EciI	GGCGGA	2 cut(s)	195, 506
Ecl136II	GAGCTC	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	339
Eco47III	AGCGCT	1 cut(s)	683
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	4 cut(s)	60, 521, 806, 859
Eco88I	CYCGRG	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	901
EcoRII	CCWGG	2 cut(s)	226, 617
EcoT38I	GRGCYC	1 cut(s)	339
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
FaeI	CATG	2 cut(s)	325, 680
FaiI	YATR	9 cut(s)	21, 32, 323, 606, 678, 742, 744, 794, 833
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	2 cut(s)	321, 676
FauNDI	CATATG	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	8 cut(s)	174, 209, 297, 346, 519, 560, 807, 855
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	8 cut(s)	174, 209, 297, 346, 519, 560, 807, 855
GlaI	GCGC	5 cut(s)	71, 73, 172, 295, 683
GluI	GCNGC	8 cut(s)	174, 209, 297, 346, 519, 560, 807, 855
GsaI	CCCAGC	1 cut(s)	871
GsuI	CTGGAG	1 cut(s)	274
HaeII	RGCGCY	3 cut(s)	174, 297, 685
HaeIII	GGCC	4 cut(s)	216, 226, 231, 609
HapII	CCGG	3 cut(s)	124, 168, 461
HgaI	GACGC	2 cut(s)	266, 623
HhaI	GCGC	5 cut(s)	72, 74, 173, 296, 684
Hin1I	GRCGYC	3 cut(s)	171, 258, 615
Hin1II	CATG	2 cut(s)	325, 680
Hin6I	GCGC	5 cut(s)	70, 72, 171, 294, 682
HinP1I	GCGC	5 cut(s)	70, 72, 171, 294, 682
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	2 cut(s)	466, 706
HpaII	CCGG	3 cut(s)	124, 168, 461
HphI	GGTGA	2 cut(s)	74, 475
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	4 cut(s)	540, 786, 878, 907
Hpy188III	TCNNGA	9 cut(s)	304, 406, 470, 478, 480, 657, 677, 710, 821
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	5 cut(s)	45, 223, 260, 278, 345
HpyAV	CCTTC	1 cut(s)	766
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	5 cut(s)	643, 664, 740, 760, 831
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 170, 177, 394, 761, 812
HpyF3I	CTNAG	1 cut(s)	546
HpySE526I	ACGT	1 cut(s)	40
Hsp92I	GRCGYC	3 cut(s)	171, 258, 615
Hsp92II	CATG	2 cut(s)	325, 680
HspAI	GCGC	5 cut(s)	70, 72, 171, 294, 682
KasI	GGCGCC	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	249
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	5 cut(s)	208, 334, 342, 353, 589
Lsp1109I	GCAGC	4 cut(s)	357, 505, 571, 866
LweI	GCATC	1 cut(s)	486
MaeII	ACGT	1 cut(s)	40
MalI	GATC	1 cut(s)	251
MbiI	CCGCTC	1 cut(s)	388
MboI	GATC	1 cut(s)	249
MboII	GAAGA	4 cut(s)	290, 514, 527, 799
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	5 cut(s)	583, 668, 798, 826, 901
Mly113I	GGCGCC	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	558
MseI	TTAA	5 cut(s)	191, 236, 624, 671, 750
MslI	CAYNNNNRTG	1 cut(s)	146
MspI	CCGG	3 cut(s)	124, 168, 461
MspR9I	CCNGG	2 cut(s)	228, 619
MvaI	CCWGG	2 cut(s)	228, 619
MvnI	CGCG	3 cut(s)	72, 441, 809
MwoI	GCNNNNNNNGC	6 cut(s)	23, 170, 177, 394, 761, 812
NarI	GGCGCC	1 cut(s)	171
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	2 cut(s)	325, 680
NlaIV	GGNNCC	2 cut(s)	172, 232
NmeAIII	GCCGAG	1 cut(s)	271
PaeR7I	CTCGAG	1 cut(s)	478
PagI	TCATGA	1 cut(s)	676
PauI	GCGCGC	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	466, 706
PkrI	GCNGC	8 cut(s)	175, 210, 298, 347, 520, 561, 808, 856
PluTI	GGCGCC	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	226, 617
PspFI	CCCAGC	1 cut(s)	867
PspGI	CCWGG	2 cut(s)	226, 617
PspN4I	GGNNCC	2 cut(s)	172, 232
PspPI	GGNCC	3 cut(s)	215, 230, 608
PteI	GCGCGC	1 cut(s)	70
RsaI	GTAC	3 cut(s)	269, 434, 629
RsaNI	GTAC	3 cut(s)	268, 433, 628
RseI	CAYNNNNRTG	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	339
SalI	GTCGAC	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	5 cut(s)	191, 236, 624, 671, 750
SatI	GCNGC	8 cut(s)	174, 209, 297, 346, 519, 560, 807, 855
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	3 cut(s)	215, 230, 608
ScrFI	CCNGG	2 cut(s)	228, 619
SduI	GDGCHC	1 cut(s)	339
SfaNI	GCATC	1 cut(s)	486
SfoI	GGCGCC	1 cut(s)	172
Sfr274I	CTCGAG	1 cut(s)	478
SgrAI	CRCCGGYG	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	2 cut(s)	478, 821
SmoI	CTYRAG	2 cut(s)	478, 821
Sse9I	AATT	5 cut(s)	583, 668, 798, 826, 901
SsiI	CCGC	9 cut(s)	162, 174, 206, 209, 297, 386, 439, 491, 807
SspDI	GGCGCC	1 cut(s)	170
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	226, 617
TaaI	ACNGT	1 cut(s)	703
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	4 cut(s)	255, 273, 315, 479
TasI	AATT	5 cut(s)	583, 668, 798, 826, 901
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	4 cut(s)	176, 211, 299, 809
TfiI	GAWTC	2 cut(s)	466, 706
Tru1I	TTAA	5 cut(s)	191, 236, 624, 671, 750
Tru9I	TTAA	5 cut(s)	191, 236, 624, 671, 750
TscAI	CASTG	2 cut(s)	554, 742
TseI	GCWGC	4 cut(s)	345, 518, 559, 854
TspDTI	ATGAA	3 cut(s)	17, 528, 852
TspGWI	ACGGA	2 cut(s)	329, 899
TspRI	CASTG	2 cut(s)	554, 742
XapI	RAATTY	3 cut(s)	583, 798, 901
XhoI	CTCGAG	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.