Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008097

Physical Location & Seq

Genomic Coordinates Reverse (-)

67474115 .. 67475606

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCGAACACTGCCAGCAACGAAATCTTAATGTTAGAAGCTCCGCCGCAAGGTCCGTCGTGGCCGGGCCCCTTAACCAACGCCGAGATCATCGACGCCTTGCCGTACATCGACGAAGACTACTACGCCAGCGCAGCCGTCAAGAGAGAGGTCGACCTCATGGTGGAGGAAGAGCTCCGTCGCAGCGCCAAAAAGCCCGCCGATTTCCTCAAAGACTTGCCTCCACTCGCCAAGCCCAATTTCAAGAATAATCCAGTTCTGGCGAGAGAGTACGACCGCGTGAGAGCTTCCAAGCCTCCCGTGGTTCTTGATTTCTCCAGAGATAAAGCGGAGATGCCGAAGAGGACTGATGAAGCTGCTTGGAGACAGGCTCTTCAGAAAGCTCAGTGCTTTTCGCAGCACAATGTCGTCAGGTTGGAGAATTTGGAGCTGATGGATAAGTATGGCCCTGATGCCTGGATTCAGTACAACAATGTATTGCAATCACTTTTGTCGAGATTGCAGAAATTAACTCATGAACGCTCTCAAATGATTGGAACCGTGAATCGTGAAAGGAAAGAACATCAGCAAAACACTGCATATGAGCTTAATGCTTTATCTGCGCAATGGAAGGAACTTTCTCTGAAAAACATAGAGATTCAAGCCGCATGTGCTAAAATTGAAAATTATATAGATGAGCTAAAAAAGGAAGCTGCAGACAGAGGCTGGGACTTAAAACCAATGGAGAATGGCCCGTTGAATTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009987 GO:0010204 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032991 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070013 GO:0071011 GO:0071013 GO:0080134 GO:0098542 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

BCAS2

Protein Analysis

250

Amino Acids

28.52

Weight (kDa)

5.48

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCAS2	PF05700	29 - 233	1.1e-59	Breast carcinoma amplified sequence 2 (BCAS2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18165
fragaria_vesca	FvH4_5g17030 FvH4_5g17030 FvH4_5g17030 FvH4_5g17030
malus_domestica	MD00G1160500.v1.1 MD14G1233600.v1.1
prunus_persica	Prupe.5G229800_v2.0.a1
pyrus_communis	pycom14g19460
rosa_chinensis	RchiOBHm_Chr7g0178821
rosa_laevigata	RLG00000005412 RLG00000032628
rosa_multiflora	Rmu_co8249681.1_g000001 Rmu_sc0015029.1_g000006 Rmu_sc0025325.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274550
rosa_rugosa	Rorug06G0420000 Rorug06G0420100
rosa_samantha	Rh1BG107100 Rh7AG019300 Rh7BG018800 Rh7CG019400 Rh7DG019200
rosa_wichuraiana	Rw7G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	603
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	279
AciI	CCGC	6 cut(s)	44, 47, 198, 277, 329, 645
AcoI	YGGCCR	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	421, 739
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	3 cut(s)	107, 272, 467
AfiI	CCNNNNNNNGG	2 cut(s)	50, 163
AgsI	TTSAA	4 cut(s)	244, 641, 662, 739
AjnI	CCWGG	1 cut(s)	455
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	9 cut(s)	41, 175, 287, 356, 383, 430, 586, 679, 692
AluI	AGCT	9 cut(s)	41, 175, 287, 356, 383, 430, 586, 679, 692
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	358
AlwNI	CAGNNNCTG	1 cut(s)	705
AoxI	GGCC	4 cut(s)	62, 67, 445, 730
ApaI	GGGCCC	1 cut(s)	71
ApeKI	GCWGC	5 cut(s)	134, 183, 356, 397, 692
ApoI	RAATTY	2 cut(s)	421, 739
AspLEI	GCGC	3 cut(s)	134, 188, 604
AspS9I	GGNCC	5 cut(s)	53, 67, 68, 446, 731
AsuC2I	CCSGG	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	71, 177
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	5 cut(s)	146, 195, 343, 409, 679
BccI	CCATC	1 cut(s)	427
BceAI	ACGGC	2 cut(s)	88, 122
BciT130I	CCWGG	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	358
BfmI	CTRYAG	1 cut(s)	693
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	7 cut(s)	47, 135, 184, 357, 398, 645, 693
BlsI	GCNGC	7 cut(s)	48, 136, 185, 358, 399, 646, 694
Bme1390I	CCNGG	2 cut(s)	66, 457
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	5 cut(s)	53, 67, 68, 446, 731
BmiI	GGNNCC	3 cut(s)	69, 70, 538
BmrFI	CCNGG	2 cut(s)	66, 457
BmsI	GCATC	2 cut(s)	324, 442
BpiI	GAAGAC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
BpmI	CTGGAG	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 163
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	611
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	50, 163
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	5 cut(s)	146, 195, 343, 409, 679
BseYI	CCCAGC	1 cut(s)	705
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	4 cut(s)	64, 69, 447, 732
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	2 cut(s)	50, 163
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	722
BsnI	GGCC	4 cut(s)	64, 69, 447, 732
Bsp120I	GGGCCC	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	71, 177
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	6 cut(s)	44, 47, 198, 277, 329, 645
BspANI	GGCC	4 cut(s)	64, 69, 447, 732
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	3 cut(s)	69, 70, 538
BspMAI	CTGCAG	1 cut(s)	697
BspQI	GCTCTTC	2 cut(s)	165, 378
BsrDI	GCAATG	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	87
BssNI	GRCGYC	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	3 cut(s)	165, 335, 378
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	16, 130, 198
BstDEI	CTNAG	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	300
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	134, 188, 604
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	87
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 134, 599, 650
BstNI	CCWGG	1 cut(s)	457
BstNSI	RCATGY	1 cut(s)	651
BstSCI	CCNGG	2 cut(s)	64, 455
BstSFI	CTRYAG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	71
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	5 cut(s)	146, 195, 343, 409, 679
BstV2I	GAAGAC	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	64, 69, 447, 732
BtgI	CCRYGG	1 cut(s)	300
BtsI	GCAGTG	2 cut(s)	9, 573
BtsIMutI	CAGTG	3 cut(s)	9, 392, 573
Cac8I	GCNNGC	3 cut(s)	16, 130, 198
CaiI	CAGNNNCTG	1 cut(s)	705
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	3 cut(s)	134, 188, 604
Cfr13I	GGNCC	5 cut(s)	53, 67, 68, 446, 731
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	3 cut(s)	106, 271, 466
CviAII	CATG	3 cut(s)	160, 515, 648
CviQI	GTAC	3 cut(s)	106, 271, 466
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	62
Eam1104I	CTCTTC	3 cut(s)	165, 335, 378
EarI	CTCTTC	3 cut(s)	165, 335, 378
EciI	GGCGGA	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	2 cut(s)	71, 177
Eco47I	GGWCC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRI	GAATTC	1 cut(s)	739
EcoRII	CCWGG	1 cut(s)	455
EcoT38I	GRGCYC	2 cut(s)	71, 177
FaeI	CATG	3 cut(s)	163, 518, 651
FaiI	YATR	9 cut(s)	161, 444, 516, 580, 582, 632, 649, 669, 671
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	3 cut(s)	159, 514, 647
FauI	CCCGC	1 cut(s)	205
FauNDI	CATATG	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	7 cut(s)	47, 135, 184, 357, 398, 645, 693
FriOI	GRGCYC	2 cut(s)	71, 177
Fsp4HI	GCNGC	7 cut(s)	47, 135, 184, 357, 398, 645, 693
FspI	TGCGCA	1 cut(s)	603
GlaI	GCGC	3 cut(s)	133, 187, 603
GluI	GCNGC	7 cut(s)	47, 135, 184, 357, 398, 645, 693
GsaI	CCCAGC	1 cut(s)	709
GsuI	CTGGAG	1 cut(s)	301
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	64, 69, 447, 732
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	3 cut(s)	134, 188, 604
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	163, 518, 651
Hin6I	GCGC	3 cut(s)	132, 186, 602
HinP1I	GCGC	3 cut(s)	132, 186, 602
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	3 cut(s)	460, 544, 637
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	378, 624, 745
Hpy188III	TCNNGA	7 cut(s)	142, 244, 308, 318, 495, 515, 548
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	4 cut(s)	61, 98, 116, 183
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4V	TGCA	4 cut(s)	481, 502, 578, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 134, 599, 650
HpyF3I	CTNAG	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	163, 518, 651
HspAI	GCGC	3 cut(s)	132, 186, 602
Kzo9I	GATC	1 cut(s)	87
LguI	GCTCTTC	2 cut(s)	165, 378
LmnI	GCTCC	3 cut(s)	46, 180, 427
Lsp1109I	GCAGC	5 cut(s)	146, 195, 343, 409, 679
LweI	GCATC	2 cut(s)	324, 442
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	4 cut(s)	128, 182, 352, 365
MhlI	GDGCHC	2 cut(s)	71, 177
MluCI	AATT	6 cut(s)	238, 421, 506, 657, 664, 739
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	8 cut(s)	142, 160, 167, 218, 231, 306, 336, 695
MseI	TTAA	5 cut(s)	29, 74, 509, 588, 713
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	66, 457
MvaI	CCWGG	1 cut(s)	457
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	11, 134, 599, 650
NciI	CCSGG	1 cut(s)	66
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	3 cut(s)	163, 518, 651
NlaIV	GGNNCC	3 cut(s)	69, 70, 538
NmeAIII	GCCGAG	1 cut(s)	109
NsbI	TGCGCA	1 cut(s)	603
NspI	RCATGY	1 cut(s)	651
PagI	TCATGA	1 cut(s)	514
PciSI	GCTCTTC	2 cut(s)	165, 378
PfeI	GAWTC	3 cut(s)	460, 544, 637
PkrI	GCNGC	7 cut(s)	48, 136, 185, 358, 399, 646, 694
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	455
PspFI	CCCAGC	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	3 cut(s)	69, 70, 538
PspOMI	GGGCCC	1 cut(s)	67
PspPI	GGNCC	5 cut(s)	53, 67, 68, 446, 731
PstI	CTGCAG	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	705
RsaI	GTAC	3 cut(s)	107, 272, 467
RsaNI	GTAC	3 cut(s)	106, 271, 466
SacI	GAGCTC	1 cut(s)	177
SalI	GTCGAC	1 cut(s)	152
SapI	GCTCTTC	2 cut(s)	165, 378
SaqAI	TTAA	5 cut(s)	29, 74, 509, 588, 713
SatI	GCNGC	7 cut(s)	47, 135, 184, 357, 398, 645, 693
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	5 cut(s)	53, 67, 68, 446, 731
ScrFI	CCNGG	2 cut(s)	66, 457
SduI	GDGCHC	2 cut(s)	71, 177
SfaNI	GCATC	2 cut(s)	324, 442
SfcI	CTRYAG	1 cut(s)	693
SinI	GGWCC	1 cut(s)	53
Sse9I	AATT	6 cut(s)	238, 421, 506, 657, 664, 739
SsiI	CCGC	6 cut(s)	44, 47, 198, 277, 329, 645
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	64, 455
TaaI	ACNGT	1 cut(s)	541
TaqI	TCGA	4 cut(s)	93, 111, 153, 494
TasI	AATT	6 cut(s)	238, 421, 506, 657, 664, 739
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	2 cut(s)	49, 647
TfiI	GAWTC	3 cut(s)	460, 544, 637
Tru1I	TTAA	5 cut(s)	29, 74, 509, 588, 713
Tru9I	TTAA	5 cut(s)	29, 74, 509, 588, 713
TscAI	CASTG	3 cut(s)	16, 392, 580
TseI	GCWGC	5 cut(s)	134, 183, 356, 397, 692
TspDTI	ATGAA	2 cut(s)	366, 531
TspGWI	ACGGA	2 cut(s)	45, 167
TspRI	CASTG	3 cut(s)	16, 392, 580
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	2 cut(s)	421, 739
XceI	RCATGY	1 cut(s)	651
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.