Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008097

Physical Location & Seq

Genomic Coordinates Reverse (-)

18604736 .. 18607472

Gene Structure 2737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG107100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCGAACACCACCTCCACCGCCAGCAACGAAATCTTAATGTTAGAAGCTCCGCCGCAAGGTCCGTCGTGGCCGGGCCCCTTAACCAACGCCGAGATCATCGACGCCTTGCCGTACATCGACGAAGACTACTATGCCAGCGCAGCCGTCAAGAGAGAGGTCGACCTCATGGTGGAGGAAGAGCTCCGTCGCAGCGCCAAAAAGCCCGCCGATTTCCTCAAAGACTTGCCTCCACTCGCTAAGCCCAATTTCAAGAATAATCCAGTTCTGGCGAGAGAGTACGACCGCGTGAGAGCTTCCAAGCCTCCCGTGGTTCTTGATTTCTCCAGAGATAAAGCGGAGATGCCGAAGAGGACTGATGAAGCTGCTTGGAGACAGGCTCTTCAGAAAGCTCAGTGCTTTTCGCAGCACAATGTCGTCAGTGACCGGTTTTCAGGTTGGAGAATTTGGAGCTGGATGGATAAGTCTGGCCCTGATGCCTGGATTCAGTACAACAATGTATTGCAATCACTTTTGTCGAGATTGCAGAAATTAACTCATGAACGCTCTCAAATGATTGGAACCGTGAATCGTGAAAGGAAAGAACATCAGCAAAACACTGCATATGAGCTTAATGCTTTATCTGCGCAATGGAAGGAACTTTCTCTGAAAAACATAGAAATTCAAGCCGCATGTGCTAAAATTGAAAATTATATAGATGAACTCAAAAAGGAAGCTGCAGAGAGAGGCTGGGACTTAAAACCAATGGAGAATGGCCCGTTGAATTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009987 GO:0010204 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032991 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070013 GO:0071011 GO:0071013 GO:0080134 GO:0098542 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

BCAS2

Protein Analysis

257

Amino Acids

29.44

Weight (kDa)

5.82

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCAS2	PF05700	32 - 241	4.1e-50	Breast carcinoma amplified sequence 2 (BCAS2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18165
fragaria_vesca	FvH4_5g17030 FvH4_5g17030 FvH4_5g17030 FvH4_5g17030
malus_domestica	MD00G1160500.v1.1 MD14G1233600.v1.1
prunus_persica	Prupe.5G229800_v2.0.a1
pyrus_communis	pycom14g19460
rosa_chinensis	RchiOBHm_Chr7g0178821
rosa_laevigata	RLG00000005412 RLG00000032628
rosa_multiflora	Rmu_co8249681.1_g000001 Rmu_sc0015029.1_g000006 Rmu_sc0025325.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274550
rosa_rugosa	Rorug06G0420000 Rorug06G0420100
rosa_samantha	Rh1BG107100 Rh7AG019300 Rh7BG018800 Rh7CG019400 Rh7DG019200
rosa_wichuraiana	Rw7G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	627
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	288
AciI	CCGC	7 cut(s)	21, 53, 56, 207, 286, 338, 669
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	3 cut(s)	444, 660, 763
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	3 cut(s)	116, 281, 491
AfiI	CCNNNNNNNGG	2 cut(s)	59, 172
AgeI	ACCGGT	1 cut(s)	426
AgsI	TTSAA	4 cut(s)	253, 665, 686, 763
AjnI	CCWGG	1 cut(s)	479
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	8 cut(s)	50, 184, 296, 365, 392, 453, 610, 716
AluI	AGCT	8 cut(s)	50, 184, 296, 365, 392, 453, 610, 716
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	367
AoxI	GGCC	4 cut(s)	71, 76, 469, 754
ApaI	GGGCCC	1 cut(s)	80
ApeKI	GCWGC	5 cut(s)	143, 192, 365, 406, 716
ApoI	RAATTY	3 cut(s)	444, 660, 763
AsiGI	ACCGGT	1 cut(s)	426
AspLEI	GCGC	3 cut(s)	143, 197, 628
AspS9I	GGNCC	5 cut(s)	62, 76, 77, 470, 755
AsuC2I	CCSGG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	80
BanII	GRGCYC	2 cut(s)	80, 186
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	5 cut(s)	155, 204, 352, 418, 703
BccI	CCATC	1 cut(s)	451
BceAI	ACGGC	2 cut(s)	97, 131
BciT130I	CCWGG	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	367
BfmI	CTRYAG	1 cut(s)	717
BfoI	RGCGCY	1 cut(s)	198
BisI	GCNGC	7 cut(s)	56, 144, 193, 366, 407, 669, 717
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	7 cut(s)	57, 145, 194, 367, 408, 670, 718
Bme1390I	CCNGG	2 cut(s)	75, 481
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	5 cut(s)	62, 76, 77, 470, 755
BmiI	GGNNCC	3 cut(s)	78, 79, 562
BmrFI	CCNGG	2 cut(s)	75, 481
BmsI	GCATC	2 cut(s)	333, 466
BpiI	GAAGAC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
BpmI	CTGGAG	1 cut(s)	310
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	426
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 172
Bse118I	RCCGGY	1 cut(s)	426
Bse1I	ACTGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	635
BseBI	CCWGG	1 cut(s)	481
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	462
BseLI	CCNNNNNNNGG	2 cut(s)	59, 172
BseMI	GCAATG	1 cut(s)	635
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	5 cut(s)	155, 204, 352, 418, 703
BseYI	CCCAGC	1 cut(s)	729
Bsh1236I	CGCG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	4 cut(s)	73, 78, 471, 756
BshTI	ACCGGT	1 cut(s)	426
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	74, 427
BslFI	GGGAC	1 cut(s)	746
BslI	CCNNNNNNNGG	2 cut(s)	59, 172
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	746
BsnI	GGCC	4 cut(s)	73, 78, 471, 756
Bsp120I	GGGCCC	1 cut(s)	76
Bsp1286I	GDGCHC	2 cut(s)	80, 186
Bsp143I	GATC	1 cut(s)	96
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	7 cut(s)	21, 53, 56, 207, 286, 338, 669
BspANI	GGCC	4 cut(s)	73, 78, 471, 756
BspCNI	CTCAG	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	3 cut(s)	78, 79, 562
BspMAI	CTGCAG	1 cut(s)	721
BspQI	GCTCTTC	2 cut(s)	174, 387
BsrDI	GCAATG	1 cut(s)	635
BsrFI	RCCGGY	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	96
BssNI	GRCGYC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	1 cut(s)	565
Bst6I	CTCTTC	3 cut(s)	174, 344, 387
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	3 cut(s)	25, 139, 207
BstDEI	CTNAG	2 cut(s)	240, 393
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	462
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	3 cut(s)	143, 197, 628
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	96
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 623, 674
BstNI	CCWGG	1 cut(s)	481
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	2 cut(s)	73, 479
BstSFI	CTRYAG	1 cut(s)	717
BstSLI	GKGCMC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	5 cut(s)	155, 204, 352, 418, 703
BstV2I	GAAGAC	1 cut(s)	132
BsuRI	GGCC	4 cut(s)	73, 78, 471, 756
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	462
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	3 cut(s)	401, 427, 597
Cac8I	GCNNGC	3 cut(s)	25, 139, 207
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	3 cut(s)	143, 197, 628
Cfr10I	RCCGGY	1 cut(s)	426
Cfr13I	GGNCC	5 cut(s)	62, 76, 77, 470, 755
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	3 cut(s)	115, 280, 490
CspAI	ACCGGT	1 cut(s)	426
CviAII	CATG	3 cut(s)	169, 539, 672
CviQI	GTAC	3 cut(s)	115, 280, 490
DdeI	CTNAG	2 cut(s)	240, 393
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	3 cut(s)	174, 344, 387
EarI	CTCTTC	3 cut(s)	174, 344, 387
EciI	GGCGGA	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	184
Eco24I	GRGCYC	2 cut(s)	80, 186
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	763
EcoRII	CCWGG	1 cut(s)	479
EcoT38I	GRGCYC	2 cut(s)	80, 186
FaeI	CATG	3 cut(s)	172, 542, 675
FaiI	YATR	9 cut(s)	135, 170, 540, 604, 606, 656, 673, 693, 695
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	3 cut(s)	168, 538, 671
FauI	CCCGC	1 cut(s)	214
FauNDI	CATATG	1 cut(s)	604
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	7 cut(s)	56, 144, 193, 366, 407, 669, 717
FokI	GGATG	1 cut(s)	469
FriOI	GRGCYC	2 cut(s)	80, 186
Fsp4HI	GCNGC	7 cut(s)	56, 144, 193, 366, 407, 669, 717
FspI	TGCGCA	1 cut(s)	627
GlaI	GCGC	3 cut(s)	142, 196, 627
GluI	GCNGC	7 cut(s)	56, 144, 193, 366, 407, 669, 717
GsaI	CCCAGC	1 cut(s)	733
GsuI	CTGGAG	1 cut(s)	310
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	4 cut(s)	73, 78, 471, 756
HapII	CCGG	2 cut(s)	74, 427
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	3 cut(s)	143, 197, 628
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	172, 542, 675
Hin6I	GCGC	3 cut(s)	141, 195, 626
HinP1I	GCGC	3 cut(s)	141, 195, 626
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	484, 568
HpaII	CCGG	2 cut(s)	74, 427
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	387, 648, 769
Hpy188III	TCNNGA	7 cut(s)	151, 253, 317, 327, 519, 539, 572
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	4 cut(s)	70, 107, 125, 192
HpyAV	CCTTC	1 cut(s)	628
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4V	TGCA	4 cut(s)	505, 526, 602, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 623, 674
HpyF3I	CTNAG	2 cut(s)	240, 393
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	172, 542, 675
HspAI	GCGC	3 cut(s)	141, 195, 626
Kzo9I	GATC	1 cut(s)	96
LguI	GCTCTTC	2 cut(s)	174, 387
LmnI	GCTCC	3 cut(s)	55, 189, 450
Lsp1109I	GCAGC	5 cut(s)	155, 204, 352, 418, 703
LweI	GCATC	2 cut(s)	333, 466
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	4 cut(s)	137, 191, 361, 374
MhlI	GDGCHC	2 cut(s)	80, 186
MluCI	AATT	7 cut(s)	247, 444, 530, 660, 681, 688, 763
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	9 cut(s)	25, 151, 169, 176, 227, 240, 315, 345, 719
MseI	TTAA	5 cut(s)	38, 83, 533, 612, 737
MspI	CCGG	2 cut(s)	74, 427
MspR9I	CCNGG	2 cut(s)	75, 481
MvaI	CCWGG	1 cut(s)	481
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	143, 623, 674
NciI	CCSGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	3 cut(s)	172, 542, 675
NlaIV	GGNNCC	3 cut(s)	78, 79, 562
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	422
NsbI	TGCGCA	1 cut(s)	627
NspI	RCATGY	1 cut(s)	675
PagI	TCATGA	1 cut(s)	538
PciSI	GCTCTTC	2 cut(s)	174, 387
PfeI	GAWTC	2 cut(s)	484, 568
PinAI	ACCGGT	1 cut(s)	426
PkrI	GCNGC	7 cut(s)	57, 145, 194, 367, 408, 670, 718
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	3 cut(s)	78, 79, 562
PspOMI	GGGCCC	1 cut(s)	76
PspPI	GGNCC	5 cut(s)	62, 76, 77, 470, 755
PstI	CTGCAG	1 cut(s)	721
RsaI	GTAC	3 cut(s)	116, 281, 491
RsaNI	GTAC	3 cut(s)	115, 280, 490
SacI	GAGCTC	1 cut(s)	186
SalI	GTCGAC	1 cut(s)	161
SapI	GCTCTTC	2 cut(s)	174, 387
SaqAI	TTAA	5 cut(s)	38, 83, 533, 612, 737
SatI	GCNGC	7 cut(s)	56, 144, 193, 366, 407, 669, 717
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	5 cut(s)	62, 76, 77, 470, 755
ScrFI	CCNGG	2 cut(s)	75, 481
SduI	GDGCHC	2 cut(s)	80, 186
SfaNI	GCATC	2 cut(s)	333, 466
SfcI	CTRYAG	1 cut(s)	717
SinI	GGWCC	1 cut(s)	62
Sse9I	AATT	7 cut(s)	247, 444, 530, 660, 681, 688, 763
SsiI	CCGC	7 cut(s)	21, 53, 56, 207, 286, 338, 669
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	73, 479
TaaI	ACNGT	1 cut(s)	565
TaqI	TCGA	4 cut(s)	102, 120, 162, 518
TasI	AATT	7 cut(s)	247, 444, 530, 660, 681, 688, 763
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	2 cut(s)	58, 671
TfiI	GAWTC	2 cut(s)	484, 568
Tru1I	TTAA	5 cut(s)	38, 83, 533, 612, 737
Tru9I	TTAA	5 cut(s)	38, 83, 533, 612, 737
TscAI	CASTG	3 cut(s)	401, 427, 604
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	5 cut(s)	143, 192, 365, 406, 716
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	3 cut(s)	375, 555, 714
TspGWI	ACGGA	2 cut(s)	54, 176
TspRI	CASTG	3 cut(s)	401, 427, 604
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	3 cut(s)	444, 660, 763
XceI	RCATGY	1 cut(s)	675
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.