Rorug06G0420100

pre-mRNA-splicing factor SPF27 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
55876970 .. 55879439
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0420100.1

Sequence Viewer

Length: 1293 bp
ATGGTTTCACAAGACTCACCCCCAAACCAAGCCTCAAGTATTCTCCACCATTTCATTGTGTCTGACTCCATGGCAGCTCAAACCCACATGGAAAACCAACACCAGCTTGATGCTGCTTACGCCTCTAATTTTCGAACCAGCACCAGCACCAGCACATACCCTCAGTCTCTTGGTCAGCTCCCCAGCATTCATTCTCTTGAGGAGAGAATGTCTAGATCACTAGACCTTCTTCATGCTCCTCCAACAGTTGCGACAGAGGGATCGGATCATATGAGCCACACAAGGCTTCTAATGGACCAGCACCAAGCACTCTCACTGTCCCTTGGCTCACAGATGCTTCTTCCTCCTAATTCTCATTCTGCTCATTATGTGACCGATGACTATTCGTTCATGGGGAATGCGCTTGCTTCGTCCTCAAGCTCGCTGAATCAGCAGTCTTTGGCAGCAGTCATTGGGAATTCAAGATATCTAAAGCCAGCTCAGTCACTGTTAGAAGAGATAGTTAGTGTTGGTGGAAAGGCAGTTGATATCAGCAGTGAAAAACATTTTGGGAAGATGTATGGTGGAGGTAGGAGAGGCTCAATGGGCCTTTCTTCTGAATTGAAAGCAGAGTTGTGCTGCAATGGCCTCATGTCAGCTGACAAACATGAATTTCAATCGAAAATCGCAAACCTCATCACCTTGCTGGAAGAGGTTGAGGACAGATGTGAGAAGTACTACCATCAAATGGAAGAAGTGATGTCATCATTTGAGATGGTAGTGGGTGCAGGAGCAGCAAAGTCTTACACAGCTCTGGCTCTCAAGGCCATGTCCAGGCACTTTGGCAGCTTGAGGGATGCTATAATGTCACATATATATGCAGAAAAGCGAAAGTTGATGCAAGATTTTCCGAAAGTGAGCAGCGGACTAGGGCAACTCAGCTTGTTTGATCGAGAGTGTAGACAGAAGAGAATGTCCCTTCAACAGCTTGGGATTATCCATGGCCAAAGGCAAGCAGCTTGGAGACCAATTAGAGGGCTGCCTGAGACCTCGGTGGCAATTCTCCGCACTTGGCTTTTCGAACACTTTCTTCATCCTTATCCTAATGACTCTGAGAAGCTAATGTTGGCATCACAAACAGGCCTGTCCAAGAACCAAGTTTCAAATTGGTTCATAAATGCACGGGTTCGGCTTTGGAAACCTATGATAGAGGAAATGTACAAAGAAGAATTTGCGGATTCTTCACAAGACTCGAATCCAGTAGCTAATAGTTCCATGACCGGTGAAAGCAACATAGATCACACAGATGATTAA

Protein Analysis

430

Amino Acids

47.81

Weight (kDa)

6.12

Isoelectric Point (pI)

56.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POX PF07526 150 - 282 1.1e-38 Associated with HOX
Homeobox_KN PF05920 351 - 390 6.5e-19 Homeobox KN domain
Homeodomain PF00046 358 - 390 3.6e-07 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 727
AccI GTMKAC 1 cut(s) 940
AciI CCGC 3 cut(s) 903, 1045, 1214
AclWI GGATC 2 cut(s) 268, 273
AcoI YGGCCR 1 cut(s) 982
AcsI RAATTY 3 cut(s) 457, 650, 1208
AfaI GTAC 2 cut(s) 716, 1199
AfiI CCNNNNNNNGG 3 cut(s) 727, 813, 1013
AgeI ACCGGT 1 cut(s) 1259
AgsI TTSAA 5 cut(s) 462, 604, 656, 962, 1143
AjnI CCWGG 1 cut(s) 812
AjuI GAANNNNNNNTTGG 4 cut(s) 531, 563, 1088, 1120
Alw26I GTCTC 3 cut(s) 171, 997, 1019
AlwI GGATC 2 cut(s) 268, 273
AlwNI CAGNNNCTG 1 cut(s) 487
AoxI GGCC 5 cut(s) 586, 625, 804, 982, 1120
ApeKI GCWGC 9 cut(s) 74, 113, 443, 618, 773, 825, 900, 995, 1018
ApoI RAATTY 3 cut(s) 457, 650, 1208
AsiGI ACCGGT 1 cut(s) 1259
Asp700I GAANNNNTTC 1 cut(s) 1065
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 2 cut(s) 295, 586
AsuHPI GGTGA 3 cut(s) 9, 670, 1274
AsuII TTCGAA 2 cut(s) 133, 1059
AvaII GGWCC 1 cut(s) 295
BalI TGGCCA 1 cut(s) 984
BbvI GCAGC 9 cut(s) 86, 100, 455, 605, 785, 837, 912, 1005, 1007
BccI CCATC 2 cut(s) 729, 748
BciT130I CCWGG 1 cut(s) 814
BcoDI GTCTC 3 cut(s) 171, 997, 1019
BfaI CTAG 3 cut(s) 213, 221, 908
BisI GCNGC 9 cut(s) 75, 114, 444, 619, 774, 826, 901, 996, 1019
BlsI GCNGC 9 cut(s) 76, 115, 445, 620, 775, 827, 902, 997, 1020
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 1 cut(s) 814
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 295, 586
BmrFI CCNGG 1 cut(s) 814
BmsI GCATC 5 cut(s) 100, 324, 826, 867, 1118
Bpu14I TTCGAA 2 cut(s) 133, 1059
BpuEI CTTGAG 5 cut(s) 19, 218, 400, 785, 850
BsaI GGTCTC 2 cut(s) 997, 1019
BsaJI CCNNGG 4 cut(s) 69, 322, 979, 1029
BsaWI WCCGGW 1 cut(s) 1259
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 727, 813, 1013
Bse118I RCCGGY 1 cut(s) 1259
Bse1I ACTGG 1 cut(s) 1238
Bse3DI GCAATG 1 cut(s) 628
BseBI CCWGG 1 cut(s) 814
BseDI CCNNGG 4 cut(s) 69, 322, 979, 1029
BseGI GGATG 2 cut(s) 841, 1072
BseLI CCNNNNNNNGG 3 cut(s) 727, 813, 1013
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 5 cut(s) 176, 494, 931, 1014, 1083
BseNI ACTGG 1 cut(s) 1238
BseRI GAGGAG 2 cut(s) 215, 228
BseXI GCAGC 9 cut(s) 86, 100, 455, 605, 785, 837, 912, 1005, 1007
BseYI CCCAGC 1 cut(s) 182
BsgI GTGCAG 1 cut(s) 786
BshFI GGCC 5 cut(s) 588, 627, 806, 984, 1122
BshTI ACCGGT 1 cut(s) 1259
BsiSI CCGG 1 cut(s) 1260
BslFI GGGAC 2 cut(s) 304, 940
BslI CCNNNNNNNGG 3 cut(s) 727, 813, 1013
BsmAI GTCTC 3 cut(s) 171, 997, 1019
BsmFI GGGAC 2 cut(s) 304, 940
BsmI GAATGC 2 cut(s) 186, 403
BsnI GGCC 5 cut(s) 588, 627, 806, 984, 1122
Bso31I GGTCTC 2 cut(s) 997, 1019
Bsp119I TTCGAA 2 cut(s) 133, 1059
Bsp1407I TGTACA 1 cut(s) 1197
Bsp143I GATC 5 cut(s) 215, 260, 265, 928, 1276
Bsp19I CCATGG 2 cut(s) 69, 979
BspACI CCGC 3 cut(s) 903, 1045, 1214
BspANI GGCC 5 cut(s) 588, 627, 806, 984, 1122
BspCNI CTCAG 5 cut(s) 175, 493, 930, 1015, 1084
BspPI GGATC 2 cut(s) 268, 273
BspT104I TTCGAA 2 cut(s) 133, 1059
BspTNI GGTCTC 2 cut(s) 997, 1019
BsrDI GCAATG 1 cut(s) 628
BsrFI RCCGGY 1 cut(s) 1259
BsrGI TGTACA 1 cut(s) 1197
BsrI ACTGG 1 cut(s) 1238
BssAI RCCGGY 1 cut(s) 1259
BssECI CCNNGG 4 cut(s) 69, 322, 979, 1029
BssMI GATC 5 cut(s) 215, 260, 265, 928, 1276
BssT1I CCWWGG 3 cut(s) 69, 322, 979
Bst2UI CCWGG 1 cut(s) 814
Bst4CI ACNGT 3 cut(s) 247, 318, 489
Bst6I CTCTTC 3 cut(s) 489, 684, 941
BstAUI TGTACA 1 cut(s) 1197
BstBI TTCGAA 2 cut(s) 133, 1059
BstC8I GCNNGC 4 cut(s) 405, 422, 477, 993
BstDEI CTNAG 5 cut(s) 162, 480, 917, 1023, 1092
BstDSI CCRYGG 2 cut(s) 69, 979
BstF5I GGATG 2 cut(s) 841, 1072
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 5 cut(s) 218, 263, 268, 931, 1279
BstMAI GTCTC 3 cut(s) 171, 997, 1019
BstMBI GATC 5 cut(s) 215, 260, 265, 928, 1276
BstMWI GCNNNNNNNGC 6 cut(s) 119, 430, 585, 624, 773, 803
BstNI CCWGG 1 cut(s) 814
BstSCI CCNGG 1 cut(s) 812
BstV1I GCAGC 9 cut(s) 86, 100, 455, 605, 785, 837, 912, 1005, 1007
BsuRI GGCC 5 cut(s) 588, 627, 806, 984, 1122
BtgI CCRYGG 2 cut(s) 69, 979
BtsCI GGATG 2 cut(s) 841, 1072
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 3 cut(s) 314, 485, 541
Cac8I GCNNGC 4 cut(s) 405, 422, 477, 993
CaiI CAGNNNCTG 1 cut(s) 487
CfoI GCGC 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 1259
Cfr13I GGNCC 2 cut(s) 295, 586
Csp6I GTAC 2 cut(s) 715, 1198
CspAI ACCGGT 1 cut(s) 1259
CviAII CATG 9 cut(s) 70, 88, 233, 391, 631, 647, 808, 980, 1255
CviQI GTAC 2 cut(s) 715, 1198
DdeI CTNAG 5 cut(s) 162, 480, 917, 1023, 1092
DpnI GATC 5 cut(s) 217, 262, 267, 930, 1278
DpnII GATC 5 cut(s) 215, 260, 265, 928, 1276
EaeI YGGCCR 1 cut(s) 982
Eam1104I CTCTTC 3 cut(s) 489, 684, 941
EarI CTCTTC 3 cut(s) 489, 684, 941
Eco130I CCWWGG 3 cut(s) 69, 322, 979
Eco147I AGGCCT 1 cut(s) 1122
Eco31I GGTCTC 2 cut(s) 997, 1019
Eco32I GATATC 2 cut(s) 467, 529
Eco47I GGWCC 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 812
EcoRV GATATC 2 cut(s) 467, 529
EcoT14I CCWWGG 3 cut(s) 69, 322, 979
ErhI CCWWGG 3 cut(s) 69, 322, 979
FaeI CATG 9 cut(s) 73, 91, 236, 394, 634, 650, 811, 983, 1258
FaqI GGGAC 2 cut(s) 304, 940
FatI CATG 9 cut(s) 69, 87, 232, 390, 630, 646, 807, 979, 1254
FauNDI CATATG 1 cut(s) 270
FblI GTMKAC 1 cut(s) 940
Fnu4HI GCNGC 9 cut(s) 75, 114, 444, 619, 774, 826, 901, 996, 1019
FokI GGATG 2 cut(s) 848, 1059
Fsp4HI GCNGC 9 cut(s) 75, 114, 444, 619, 774, 826, 901, 996, 1019
FspBI CTAG 3 cut(s) 213, 221, 908
GlaI GCGC 1 cut(s) 402
GluI GCNGC 9 cut(s) 75, 114, 444, 619, 774, 826, 901, 996, 1019
GsaI CCCAGC 1 cut(s) 186
HaeIII GGCC 5 cut(s) 588, 627, 806, 984, 1122
HapII CCGG 1 cut(s) 1260
HhaI GCGC 1 cut(s) 403
Hin1II CATG 9 cut(s) 73, 91, 236, 394, 634, 650, 811, 983, 1258
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HinfI GANTC 7 cut(s) 14, 65, 427, 1088, 1217, 1229, 1234
HpaII CCGG 1 cut(s) 1260
HphI GGTGA 3 cut(s) 9, 670, 1274
Hpy166II GTNNAC 1 cut(s) 941
Hpy188I TCNGA 5 cut(s) 64, 265, 598, 891, 1093
Hpy188III TCNNGA 4 cut(s) 197, 213, 462, 932
Hpy8I GTNNAC 1 cut(s) 941
HpyAV CCTTC 2 cut(s) 236, 968
HpyCH4III ACNGT 3 cut(s) 247, 318, 489
HpyCH4V TGCA 5 cut(s) 621, 767, 860, 880, 1160
HpyF10VI GCNNNNNNNGC 6 cut(s) 119, 430, 585, 624, 773, 803
HpyF3I CTNAG 5 cut(s) 162, 480, 917, 1023, 1092
Hsp92II CATG 9 cut(s) 73, 91, 236, 394, 634, 650, 811, 983, 1258
HspAI GCGC 1 cut(s) 401
Kzo9I GATC 5 cut(s) 215, 260, 265, 928, 1276
LmnI GCTCC 3 cut(s) 183, 241, 770
Lsp1109I GCAGC 9 cut(s) 86, 100, 455, 605, 785, 837, 912, 1005, 1007
LweI GCATC 5 cut(s) 100, 324, 826, 867, 1118
MaeI CTAG 3 cut(s) 213, 221, 908
MaeIII GTNAC 3 cut(s) 370, 483, 846
MalI GATC 5 cut(s) 217, 262, 267, 930, 1278
MboI GATC 5 cut(s) 215, 260, 265, 928, 1276
MlsI TGGCCA 1 cut(s) 984
MluCI AATT 9 cut(s) 127, 349, 457, 599, 650, 1008, 1038, 1144, 1208
MluNI TGGCCA 1 cut(s) 984
MlyI GAGTC 4 cut(s) 8, 59, 1082, 1223
MmeI TCCRAC 1 cut(s) 266
Mox20I TGGCCA 1 cut(s) 984
MroXI GAANNNNTTC 1 cut(s) 1065
MscI TGGCCA 1 cut(s) 984
MseI TTAA 1 cut(s) 1291
MslI CAYNNNNRTG 2 cut(s) 855, 1284
Msp20I TGGCCA 1 cut(s) 984
MspA1I CMGCKG 2 cut(s) 638, 903
MspI CCGG 1 cut(s) 1260
MspR9I CCNGG 1 cut(s) 814
Mva1269I GAATGC 2 cut(s) 186, 403
MvaI CCWGG 1 cut(s) 814
MwoI GCNNNNNNNGC 6 cut(s) 119, 430, 585, 624, 773, 803
NcoI CCATGG 2 cut(s) 69, 979
NdeI CATATG 1 cut(s) 270
NdeII GATC 5 cut(s) 215, 260, 265, 928, 1276
NlaIII CATG 9 cut(s) 73, 91, 236, 394, 634, 650, 811, 983, 1258
NmuCI GTSAC 3 cut(s) 370, 483, 846
NspV TTCGAA 2 cut(s) 133, 1059
PceI AGGCCT 1 cut(s) 1122
PctI GAATGC 2 cut(s) 186, 403
PdmI GAANNNNTTC 1 cut(s) 1065
PfeI GAWTC 3 cut(s) 427, 1217, 1234
PflMI CCANNNNNTGG 1 cut(s) 727
PinAI ACCGGT 1 cut(s) 1259
PkrI GCNGC 9 cut(s) 76, 115, 445, 620, 775, 827, 902, 997, 1020
PleI GAGTC 4 cut(s) 8, 59, 1082, 1223
PpsI GAGTC 4 cut(s) 8, 59, 1082, 1223
Psp6I CCWGG 1 cut(s) 812
PspFI CCCAGC 1 cut(s) 182
PspGI CCWGG 1 cut(s) 812
PspPI GGNCC 2 cut(s) 295, 586
PstNI CAGNNNCTG 1 cut(s) 487
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 2 cut(s) 716, 1199
RsaNI GTAC 2 cut(s) 715, 1198
RseI CAYNNNNRTG 2 cut(s) 855, 1284
SaqAI TTAA 1 cut(s) 1291
SatI GCNGC 9 cut(s) 75, 114, 444, 619, 774, 826, 901, 996, 1019
Sau3AI GATC 5 cut(s) 215, 260, 265, 928, 1276
Sau96I GGNCC 2 cut(s) 295, 586
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 4 cut(s) 8, 59, 1082, 1223
ScrFI CCNGG 1 cut(s) 814
SfaNI GCATC 5 cut(s) 100, 324, 826, 867, 1118
SfuI TTCGAA 2 cut(s) 133, 1059
SinI GGWCC 1 cut(s) 295
SmiMI CAYNNNNRTG 2 cut(s) 855, 1284
SmlI CTYRAG 5 cut(s) 34, 197, 415, 800, 829
SmoI CTYRAG 5 cut(s) 34, 197, 415, 800, 829
Sse9I AATT 9 cut(s) 127, 349, 457, 599, 650, 1008, 1038, 1144, 1208
SseBI AGGCCT 1 cut(s) 1122
SsiI CCGC 3 cut(s) 903, 1045, 1214
SspMI CTAG 3 cut(s) 213, 221, 908
StuI AGGCCT 1 cut(s) 1122
StyD4I CCNGG 1 cut(s) 812
StyI CCWWGG 3 cut(s) 69, 322, 979
TaaI ACNGT 3 cut(s) 247, 318, 489
TaqI TCGA 5 cut(s) 133, 659, 931, 1059, 1232
TaqII GACCGA 1 cut(s) 389
TasI AATT 9 cut(s) 127, 349, 457, 599, 650, 1008, 1038, 1144, 1208
TatI WGTACW 2 cut(s) 714, 1197
TfiI GAWTC 3 cut(s) 427, 1217, 1234
Tru1I TTAA 1 cut(s) 1291
Tru9I TTAA 1 cut(s) 1291
TscAI CASTG 3 cut(s) 321, 492, 541
TseFI GTSAC 3 cut(s) 370, 483, 846
TseI GCWGC 9 cut(s) 74, 113, 443, 618, 773, 825, 900, 995, 1018
Tsp45I GTSAC 3 cut(s) 370, 483, 846
TspDTI ATGAA 7 cut(s) 43, 179, 221, 379, 663, 1061, 1141
TspRI CASTG 3 cut(s) 321, 492, 541
Van91I CCANNNNNTGG 1 cut(s) 727
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 3 cut(s) 457, 650, 1208
XbaI TCTAGA 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 940
XmnI GAANNNNTTC 1 cut(s) 1065
XspI CTAG 3 cut(s) 213, 221, 908
ZrmI AGTACT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.