Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007457.1

Orthogroup ID

OG0000814

Physical Location & Seq

Genomic Coordinates Reverse (-)

50237 .. 53476

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007457.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgttcgactttgttaaggaaatgcctaagggttttaccctaaaccttcctgattttacggcactgataggtccattgttgttttcatgggttgttttacagctgttcccgaaggaaaaagttgagaagctgatggaagaagcaaagtatacaagtcatgttgtgatatgtgacaacataaagaaggtgtatccaggaagagatggaaaccctgagaaatttgcagtgagagggttgtctcttgctttgcctcaaggggaatgctttggtatgcttggtcctagtggtgcagggaagacctcttttattgaaatggcagtggaagattctttgaagagtttgaatctatttaatggtggggttgctgacaaacgagcagggcaatatagtggaggtatgaagagaaggcttagcgtcgctatttcactcatagggaatcccatagctgtttacatggatgaacccagtaccggacttgatccagcttcaagaaacactctatggaatgttgtaaagctcgctaagcaaggccgtgtcatcatattaaccacacattccatggaagaggcagagttcttgtgtgatcgaataggaatttttgtagacggaagactgcagtgcataggaaatccaaaagagttgaagggcagatatggaggatcatatgtgttcacaatcacaacagattcatgtcatgaccaagaagtggagagtctggtacagagactcgccccgaacgccaacagggtataccatctcgccggaacacaaaaattcgagtttcccaaaagtgaggtcagaattgcagatgttttccagacagtggagcatgtaaagaagatgttcacagtctatgcttggggcctggctgacactactctggaggatgtctttattaaggttgcaagtgcacccaaaaggcttgaatccaacgtcttaagtagagacaatttgatcgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

320

Amino Acids

35.52

Weight (kDa)

6.97

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47740 AT3G47750 AT3G47760 AT3G47760 AT3G47760 AT3G47770 AT3G47770 AT3G47770 AT3G47780 AT3G47790 AT3G47790 AT3G47790 AT5G61700 AT5G61700 AT5G61700 AT5G61700 AT5G61740 AT5G61740 AT5G61740
fragaria_vesca	FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g17020
malus_domestica	MD00G1160300.v1.1 MD06G1189700.v1.1 MD14G1196600.v1.1
prunus_persica	Prupe.5G188500_v2.0.a1 Prupe.5G188500_v2.0.a1 Prupe.5G188700_v2.0.a1 Prupe.5G229600_v2.0.a1 Prupe.5G229600_v2.0.a1
pyrus_communis	pycom06g16850 pycom14g16330
rosa_chinensis	RchiOBHm_Chr7g0178831 RchiOBHm_Chr7g0180791 RchiOBHm_Chr7g0180811
rosa_laevigata	RLG00000005228 RLG00000005229 RLG00000005411
rosa_multiflora	Rmu_sc0007457.1_g000007 Rmu_sc0007457.1_g000009 Rmu_sc0025325.1_g000002 Rmu_sc0025325.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272510 Rroxscaffold_3G00272520 Rroxscaffold_3G00274540
rosa_rugosa	Rorug01G0115100 Rorug06G0420100 Rorug06G0420100 Rorug06G0436000 Rorug06G0436100 Rorug06G0436200 Rorug06G0436300
rosa_samantha	Rh1BG107000 Rh7AG019400 Rh7AG037800 Rh7AG038000 Rh7BG018900 Rh7BG037600 Rh7BG037800 Rh7CG019500 Rh7CG039200 Rh7CG039300 Rh7DG019300
rosa_wichuraiana	Rw7G001580 Rw7G003120 Rw7G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	706, 823
AccI	GTMKAC	3 cut(s)	149, 603, 750
AclWI	GGATC	2 cut(s)	473, 667
AcsI	RAATTY	3 cut(s)	218, 594, 773
AfaI	GTAC	2 cut(s)	469, 720
AfiI	CCNNNNNNNGG	3 cut(s)	470, 706, 823
AflII	CTTAAG	1 cut(s)	937
AgsI	TTSAA	6 cut(s)	311, 334, 343, 489, 643, 926
AjnI	CCWGG	2 cut(s)	193, 864
AluBI	AGCT	5 cut(s)	103, 130, 446, 485, 517
AluI	AGCT	5 cut(s)	103, 130, 446, 485, 517
Alw21I	GWGCWC	1 cut(s)	913
Alw26I	GTCTC	3 cut(s)	243, 718, 939
Alw44I	GTGCAC	1 cut(s)	909
AlwI	GGATC	2 cut(s)	473, 667
AoxI	GGCC	2 cut(s)	529, 862
ApaLI	GTGCAC	1 cut(s)	909
ApoI	RAATTY	3 cut(s)	218, 594, 773
ArsI	GACNNNNNNTTYG	2 cut(s)	780, 812
Asp700I	GAANNNNTTC	1 cut(s)	842
AspS9I	GGNCC	3 cut(s)	71, 278, 862
AvaII	GGWCC	2 cut(s)	71, 278
AxyI	CCTNAGG	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	913
BbsI	GAAGAC	2 cut(s)	302, 616
Bbv12I	GWGCWC	1 cut(s)	913
BccI	CCATC	3 cut(s)	127, 197, 762
BceAI	ACGGC	2 cut(s)	75, 516
BciT130I	CCWGG	2 cut(s)	195, 866
BciVI	GTATCC	1 cut(s)	201
BcoDI	GTCTC	3 cut(s)	243, 718, 939
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	614
BfrI	CTTAAG	1 cut(s)	937
BfuI	GTATCC	1 cut(s)	201
BlpI	GCTNAGC	2 cut(s)	410, 522
Bme1390I	CCNGG	2 cut(s)	195, 866
Bme18I	GGWCC	2 cut(s)	71, 278
BmgT120I	GGNCC	3 cut(s)	71, 278, 862
BmiI	GGNNCC	1 cut(s)	863
BmrFI	CCNGG	2 cut(s)	195, 866
BmrI	ACTGGG	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	459
BpiI	GAAGAC	2 cut(s)	302, 616
BpmI	CTGGAG	1 cut(s)	902
Bpu1102I	GCTNAGC	2 cut(s)	410, 522
BpuEI	CTTGAG	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	558
BsaWI	WCCGGW	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	3 cut(s)	470, 706, 823
Bse1I	ACTGG	1 cut(s)	465
Bse21I	CCTNAGG	1 cut(s)	27
BseBI	CCWGG	2 cut(s)	195, 866
BseDI	CCNNGG	1 cut(s)	558
BseGI	GGATG	2 cut(s)	463, 892
BseLI	CCNNNNNNNGG	3 cut(s)	470, 706, 823
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	465
BseSI	GKGCMC	1 cut(s)	913
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	531, 864
BsiHKAI	GWGCWC	1 cut(s)	913
BsiSI	CCGG	2 cut(s)	471, 762
BslI	CCNNNNNNNGG	3 cut(s)	470, 706, 823
BsmAI	GTCTC	3 cut(s)	243, 718, 939
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	531, 864
Bsp1286I	GDGCHC	1 cut(s)	913
Bsp143I	GATC	4 cut(s)	478, 583, 659, 954
Bsp1720I	GCTNAGC	2 cut(s)	410, 522
Bsp19I	CCATGG	1 cut(s)	558
BspANI	GGCC	2 cut(s)	531, 864
BspCNI	CTCAG	1 cut(s)	205
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	863
BspMAI	CTGCAG	1 cut(s)	618
BspPI	GGATC	2 cut(s)	473, 667
BspTI	CTTAAG	1 cut(s)	937
BsrI	ACTGG	1 cut(s)	465
BssECI	CCNNGG	1 cut(s)	558
BssMI	GATC	4 cut(s)	478, 583, 659, 954
BssNAI	GTATAC	2 cut(s)	150, 751
BssT1I	CCWWGG	1 cut(s)	558
Bst1107I	GTATAC	2 cut(s)	150, 751
Bst2UI	CCWGG	2 cut(s)	195, 866
Bst4CI	ACNGT	2 cut(s)	823, 850
Bst6I	CTCTTC	4 cut(s)	193, 329, 395, 558
BstAFI	CTTAAG	1 cut(s)	937
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	4 cut(s)	27, 213, 410, 522
BstDSI	CCRYGG	1 cut(s)	558
BstF5I	GGATG	2 cut(s)	463, 892
BstKTI	GATC	4 cut(s)	481, 586, 662, 957
BstMAI	GTCTC	3 cut(s)	243, 718, 939
BstMBI	GATC	4 cut(s)	478, 583, 659, 954
BstMWI	GCNNNNNNNGC	2 cut(s)	523, 737
BstNI	CCWGG	2 cut(s)	195, 866
BstNSI	RCATGY	1 cut(s)	833
BstSCI	CCNGG	2 cut(s)	193, 864
BstSFI	CTRYAG	1 cut(s)	614
BstSLI	GKGCMC	1 cut(s)	913
BstV2I	GAAGAC	2 cut(s)	302, 616
BstZ17I	GTATAC	2 cut(s)	150, 751
Bsu36I	CCTNAGG	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	531, 864
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	2 cut(s)	463, 892
BtsI	GCAGTG	3 cut(s)	231, 324, 623
BtsIMutI	CAGTG	5 cut(s)	62, 231, 324, 623, 828
Cac8I	GCNNGC	1 cut(s)	519
CciI	TCATGA	1 cut(s)	694
Cfr13I	GGNCC	3 cut(s)	71, 278, 862
CseI	GACGC	1 cut(s)	403
Csp6I	GTAC	2 cut(s)	468, 719
CviAII	CATG	7 cut(s)	87, 158, 454, 559, 690, 695, 830
CviQI	GTAC	2 cut(s)	468, 719
DdeI	CTNAG	4 cut(s)	27, 213, 410, 522
DpnI	GATC	4 cut(s)	480, 585, 661, 956
DpnII	GATC	4 cut(s)	478, 583, 659, 954
Eam1104I	CTCTTC	4 cut(s)	193, 329, 395, 558
EarI	CTCTTC	4 cut(s)	193, 329, 395, 558
Eco130I	CCWWGG	1 cut(s)	558
Eco47I	GGWCC	2 cut(s)	71, 278
Eco81I	CCTNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	862
EcoRII	CCWGG	2 cut(s)	193, 864
EcoT14I	CCWWGG	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	7 cut(s)	90, 161, 457, 562, 693, 698, 833
FatI	CATG	7 cut(s)	86, 157, 453, 558, 689, 694, 829
FauNDI	CATATG	1 cut(s)	664
FblI	GTMKAC	3 cut(s)	149, 603, 750
FokI	GGATG	2 cut(s)	470, 899
FspBI	CTAG	1 cut(s)	282
GsuI	CTGGAG	1 cut(s)	902
HaeIII	GGCC	2 cut(s)	531, 864
HapII	CCGG	2 cut(s)	471, 762
HgaI	GACGC	1 cut(s)	403
Hin1II	CATG	7 cut(s)	90, 161, 457, 562, 693, 698, 833
HinfI	GANTC	7 cut(s)	326, 343, 436, 686, 712, 726, 926
HpaII	CCGG	2 cut(s)	471, 762
Hpy166II	GTNNAC	7 cut(s)	150, 451, 604, 672, 751, 846, 911
Hpy188I	TCNGA	1 cut(s)	800
Hpy188III	TCNNGA	6 cut(s)	50, 109, 489, 695, 817, 881
Hpy8I	GTNNAC	7 cut(s)	150, 451, 604, 672, 751, 846, 911
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	5 cut(s)	56, 106, 178, 399, 637
HpyCH4III	ACNGT	2 cut(s)	823, 850
HpyCH4IV	ACGT	1 cut(s)	933
HpyCH4V	TGCA	7 cut(s)	224, 290, 616, 621, 806, 905, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	523, 737
HpyF3I	CTNAG	4 cut(s)	27, 213, 410, 522
HpySE526I	ACGT	1 cut(s)	933
Hsp92II	CATG	7 cut(s)	90, 161, 457, 562, 693, 698, 833
Kzo9I	GATC	4 cut(s)	478, 583, 659, 954
LmnI	GCTCC	1 cut(s)	826
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	933
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	4 cut(s)	480, 585, 661, 956
MboI	GATC	4 cut(s)	478, 583, 659, 954
MboII	GAAGA	9 cut(s)	149, 210, 307, 335, 346, 412, 575, 621, 850
MhlI	GDGCHC	1 cut(s)	913
MluCI	AATT	5 cut(s)	218, 594, 773, 801, 949
MlyI	GAGTC	2 cut(s)	720, 721
MmeI	TCCRAC	1 cut(s)	954
MnlI	CCTC	8 cut(s)	224, 261, 310, 386, 559, 650, 787, 877
MroXI	GAANNNNTTC	1 cut(s)	842
MseI	TTAA	5 cut(s)	15, 351, 545, 897, 938
MspA1I	CMGCKG	1 cut(s)	103
MspCI	CTTAAG	1 cut(s)	937
MspI	CCGG	2 cut(s)	471, 762
MspR9I	CCNGG	2 cut(s)	195, 866
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	2 cut(s)	195, 866
MwoI	GCNNNNNNNGC	2 cut(s)	523, 737
NcoI	CCATGG	1 cut(s)	558
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	4 cut(s)	478, 583, 659, 954
NlaIII	CATG	7 cut(s)	90, 161, 457, 562, 693, 698, 833
NlaIV	GGNNCC	1 cut(s)	863
NmuCI	GTSAC	1 cut(s)	170
NspI	RCATGY	1 cut(s)	833
PagI	TCATGA	1 cut(s)	694
PctI	GAATGC	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	842
PfeI	GAWTC	5 cut(s)	326, 343, 436, 686, 926
PflMI	CCANNNNNTGG	2 cut(s)	706, 823
PfoI	TCCNGGA	1 cut(s)	193
PleI	GAGTC	2 cut(s)	720, 720
PpsI	GAGTC	2 cut(s)	720, 720
Psp6I	CCWGG	2 cut(s)	193, 864
PspGI	CCWGG	2 cut(s)	193, 864
PspN4I	GGNNCC	1 cut(s)	863
PspPI	GGNCC	3 cut(s)	71, 278, 862
PstI	CTGCAG	1 cut(s)	618
PvuII	CAGCTG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	469, 720
RsaNI	GTAC	2 cut(s)	468, 719
SaqAI	TTAA	5 cut(s)	15, 351, 545, 897, 938
Sau3AI	GATC	4 cut(s)	478, 583, 659, 954
Sau96I	GGNCC	3 cut(s)	71, 278, 862
SchI	GAGTC	2 cut(s)	720, 721
ScrFI	CCNGG	2 cut(s)	195, 866
SduI	GDGCHC	1 cut(s)	913
SfcI	CTRYAG	1 cut(s)	614
SinI	GGWCC	2 cut(s)	71, 278
SmlI	CTYRAG	2 cut(s)	252, 937
SmoI	CTYRAG	2 cut(s)	252, 937
Sse9I	AATT	5 cut(s)	218, 594, 773, 801, 949
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	193, 864
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	2 cut(s)	823, 850
TaiI	ACGT	1 cut(s)	936
TaqI	TCGA	4 cut(s)	6, 586, 777, 957
TasI	AATT	5 cut(s)	218, 594, 773, 801, 949
TfiI	GAWTC	5 cut(s)	326, 343, 436, 686, 926
Tru1I	TTAA	5 cut(s)	15, 351, 545, 897, 938
Tru9I	TTAA	5 cut(s)	15, 351, 545, 897, 938
TscAI	CASTG	5 cut(s)	69, 231, 324, 623, 828
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	4 cut(s)	75, 413, 474, 678
TspGWI	ACGGA	1 cut(s)	621
TspRI	CASTG	5 cut(s)	69, 231, 324, 623, 828
Van91I	CCANNNNNTGG	2 cut(s)	706, 823
Vha464I	CTTAAG	1 cut(s)	937
VneI	GTGCAC	1 cut(s)	909
VpaK11BI	GGWCC	2 cut(s)	71, 278
XapI	RAATTY	3 cut(s)	218, 594, 773
XceI	RCATGY	1 cut(s)	833
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XmiI	GTMKAC	3 cut(s)	149, 603, 750
XmnI	GAANNNNTTC	1 cut(s)	842
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.