Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000814

Physical Location & Seq

Genomic Coordinates Forward (+)

2425418 .. 2431633

Gene Structure 6216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG037800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2811 bp

ATGGCGGAGTTTGTTGGTAGCCCAGCTAGTTTCTGGGTTCAGTCCAATGCTTTGCTCAGAAAGAACTTAACCTTTCAGAAACGAAGAATGTGCGCCAACATTGCGCTCATTTTAATACCAGCTTTCTTCTGCATATTCTTCGCCGTTATCCAATTCCTGATAGATATCAAGATGGTCGCACTTGCCATAAAGCTATGCAAGGAGAGGCCAGAGCTATTGGGCCCAGAGGCTGAGATTGCTCAACAGTGTGCAATCACTTCTCCTCCGGAATGGCCTCCCTTGGTAAGACTACCAGGACCCCCTTCTCGTGCTGCCCGAAGAGATTACCCTGATCCCGAGCCCGATGAGGAGTGCTGGTTGAAAGGCACTTGCCCTGTGACGATACTTATCACCGGGAATAACCAGACATTTGGACGAAAATTGGGTTCAAACATGTTGCCGGCCGGTGATTTGCCGAAAAATTCCTCCGGCAACCTTACGGATTGGACCAAATTTGTCGTGGGTTCACACTACGATGTATCACAATTTTATATGGATCCTGCTTTCGAGTCAGATCACAGGACCTTTTATCTGCAGAATCAATGCAAGGATGATGAAGATCGGGTCATCAGTGCTCCAGTTCAAGTATTAGCAAATAACCCATTAGAAAAAGAGGTCGAATGTCTCCGATGCTTTATATTGTGGCGTAATAGTTATTCTGAAATAAACGATGAACTGTTCAAAGGTCAGAGGAAGGGGAATAAACAGAACGAAGCTAATGCAACACTTTCAGCTTATGATATCTCAAACTCGGATGAGAATACTTATAATGTGACCATATGGTACGATTCAAACCAGGGCTACAATCAGAATTTGAAACGGATTCCACGCTTGGTCAATATGGCATCAAACGCCTACCTTCGGTTAGTGAAAGGAAATGAGACAAAAATTATGTTCGACTTTGTTAAGGAAATGCCTAAGGGTTTTACCCTAAACCTTCCTGATTTTACGGCACTGATAGGTCCATTGTTGTTTTCATGGGTTGTTTTACAGCTGTTCCCGGTTGTGTTGGCGTCTCTGGTTTATGAGAAACAAGAAAGACTGAGAGTGATGATGAAAATGCATGGTCTCGGTGATGGGCCTTACTGGATGATTCAATATTCTTATTTTCTTGCAATATCTGTACTCTACATTATATGTTTTGTTGGATTTGGTTCACTTGTAGGCTTACATTTCTTCTACGAACATGACTACTCCCTCCAATTTATATTTTACTTCTTCTTTGTAAACTTGCAAATAGCGCTGGCTTTTCTTTTGTCGTCAATGTTCTCACACACTAGGGCTGCTACAGTTGTAGCTTACCTTTTCGTCTTTGGTAGCGGGCTTCTCGGGTCCTCTTTCTTTGGGAACCTTCTCGATGGTGATCAAACAGTGTCTAAAGCGTGGATCATTCTTCTAGAGTTATATCCTGGCTTCTCTCTGTACCGAGGCTTATACGAGTTTGGGCAATATACCTCCGAAGCGAAAATCACGAAGACTGGTGGTATGGGTTGGGGGAATTTGAATGATAGCGCAAATGGTATGAGAGACGTCTTGACCATCATGCCATTAGAGTGGGCCGTGCTGCTGCTTCTTGCATTTTACATAGATCAAGTTGTGACATGTGGAAAATCTCCTCTTTTCTTCTTGCCAAGAAAGAAAGCACCAGCTTTCCAAATCCCTAGTATGGAAAGGCATGGATCTAAAAGTTTTGGTGACATGGAGAAACCTGATGTCGCTCAAGAGAAGGAAAAAGTTGAGAAGCTGATGGAAGAAGCAAAGTATACAAGTCATGTTGTGATATGTGACAACATAAAGAAGGTGTATCCAGGAAGAGATGGAAACCCTGAGAAATTTGCAGTGAGAGGGTTGTCTCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCTAGTGGTGCAGGGAAGACCTCTTTTATTGAAATGATGATTGGTCTCGCAAAGCCAACTACTGGCACAGCCTATGTTCAGGGCTTGGACCTTGTAACTCAAATGAATGAAATATATTCCTGCATTGGTGTTTGTCCACAGCACGACCTACTATGGGCAACCCTAACAGGAAGAGAGCATCTATTATTTTACGGCAGACTTAAGAACCTTAAAGGTTCTGACTTAACCAAAGCAGTGGAAGATTCTTTGAAGAGTCTGAATCTATTTAATGGTGGGGTTGCTGACAAACAAGCAGGGCAATATAGTGGAGGTATGAAGAGAAGGCTTAGCGTCGCCATTTCACTCATAGGGAATCCCATAGCTGTTTACATGGATGAACCCAGTACCGGACTTGATCCAGCTTCAAGAAACACTCTATGGAATGTTGTAAAGCTTGCTAAGCAAGGCCGCGTCATCATATTAACCACACATTCCATGGAAGAGGCAGAGTTCTTGTGTGATCGAATAGGAATTTTTGTAGACGGAAGACTGCAGTGCATAGGAAATCCAAAAGAGTTGAAGGGCAGATATGGAGGATCATATGTGTTCACAATCACAACAGATTCATGTCATGACCAAGAAGTGGAGAGTCTAGTACAGAGACTCGCCCCGAATGCCAACAGGGTATACCACCTCGCCGGAACACAAAAATTCGAGTTTCCCAAAAGTGAGGTCAGAATTGCAGATGTTTTCCAGACAGTGGAGCATGTAAAGAAGATGTTCACAGTCTATGCTTGGGGCCTGGCTGACACTACTTTGGAGGATGTCTTTATTAAGGTTGCAAGTGCACCCAAAAGGCTTGAATCCAACGTCTTAAGTAGAGACAATTCGATCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

936

Amino Acids

105.1

Weight (kDa)

6.58

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	240 - 527	5.6e-13	ABC-2 family transporter protein
ABC_tran	PF00005	628 - 772	1.8e-21	ABC transporter
AAA_21	PF13304	736 - 804	5.6e-07	AAA domain, putative AbiEii toxin, Type IV TA system
ABCA12_C	PF24526	838 - 888	5.2e-27	ABCA12-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47740 AT3G47750 AT3G47760 AT3G47760 AT3G47760 AT3G47770 AT3G47770 AT3G47770 AT3G47780 AT3G47790 AT3G47790 AT3G47790 AT5G61700 AT5G61700 AT5G61700 AT5G61700 AT5G61740 AT5G61740 AT5G61740
fragaria_vesca	FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g17020
malus_domestica	MD00G1160300.v1.1 MD06G1189700.v1.1 MD14G1196600.v1.1
prunus_persica	Prupe.5G188500_v2.0.a1 Prupe.5G188500_v2.0.a1 Prupe.5G188700_v2.0.a1 Prupe.5G229600_v2.0.a1 Prupe.5G229600_v2.0.a1
pyrus_communis	pycom06g16850 pycom14g16330
rosa_chinensis	RchiOBHm_Chr7g0178831 RchiOBHm_Chr7g0180791 RchiOBHm_Chr7g0180811
rosa_laevigata	RLG00000005228 RLG00000005229 RLG00000005411
rosa_multiflora	Rmu_sc0007457.1_g000007 Rmu_sc0007457.1_g000009 Rmu_sc0025325.1_g000002 Rmu_sc0025325.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272510 Rroxscaffold_3G00272520 Rroxscaffold_3G00274540
rosa_rugosa	Rorug01G0115100 Rorug06G0420100 Rorug06G0420100 Rorug06G0436000 Rorug06G0436100 Rorug06G0436200 Rorug06G0436300
rosa_samantha	Rh1BG107000 Rh7AG019400 Rh7AG037800 Rh7AG038000 Rh7BG018900 Rh7BG037600 Rh7BG037800 Rh7CG019500 Rh7CG039200 Rh7CG039300 Rh7DG019300
rosa_wichuraiana	Rw7G001580 Rw7G003120 Rw7G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	807
AatII	GACGTC	1 cut(s)	1572
AccB7I	CCANNNNNTGG	3 cut(s)	1994, 2554, 2671
AccI	GTMKAC	3 cut(s)	1802, 2451, 2598
AccII	CGCG	1 cut(s)	2382
AccIII	TCCGGA	1 cut(s)	265
AciI	CCGC	3 cut(s)	5, 1359, 2380
AclWI	GGATC	7 cut(s)	326, 530, 543, 1433, 1726, 2321, 2515
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	7 cut(s)	460, 491, 850, 1537, 1871, 2442, 2621
AcyI	GRCGYC	2 cut(s)	1052, 1569
AfaI	GTAC	5 cut(s)	824, 1164, 1463, 2317, 2568
AfeI	AGCGCT	1 cut(s)	1281
AfiI	CCNNNNNNNGG	7 cut(s)	900, 1705, 1994, 2086, 2318, 2554, 2671
AflII	CTTAAG	2 cut(s)	2132, 2785
AflIII	ACRYGT	2 cut(s)	432, 1640
AjnI	CCWGG	5 cut(s)	292, 834, 1447, 1846, 2712
AjuI	GAANNNNNNNTTGG	2 cut(s)	1956, 1988
Alw21I	GWGCWC	2 cut(s)	616, 2761
Alw26I	GTCTC	9 cut(s)	668, 914, 1059, 1112, 1560, 1896, 1982, 2566, 2787
Alw44I	GTGCAC	1 cut(s)	2757
AlwI	GGATC	7 cut(s)	326, 530, 543, 1433, 1726, 2321, 2515
AlwNI	CAGNNNCTG	1 cut(s)	230
Ama87I	CYCGRG	2 cut(s)	335, 1367
Aor13HI	TCCGGA	1 cut(s)	265
Aor51HI	AGCGCT	1 cut(s)	1281
AoxI	GGCC	8 cut(s)	206, 220, 272, 441, 1118, 1596, 2377, 2710
ApaI	GGGCCC	1 cut(s)	224
ApaLI	GTGCAC	1 cut(s)	2757
ApeKI	GCWGC	4 cut(s)	311, 1322, 1603, 1606
ApoI	RAATTY	7 cut(s)	460, 491, 850, 1537, 1871, 2442, 2621
ArsI	GACNNNNNNTTYG	2 cut(s)	2628, 2660
Asp700I	GAANNNNTTC	1 cut(s)	2690
AspLEI	GCGC	4 cut(s)	95, 106, 1282, 1553
AsuC2I	CCSGG	2 cut(s)	394, 1040
AsuHPI	GGTGA	5 cut(s)	382, 458, 1124, 1412, 1745
AvaI	CYCGRG	2 cut(s)	335, 1367
AvaII	GGWCC	7 cut(s)	296, 486, 561, 1001, 1371, 1931, 2020
AxyI	CCTNAGG	1 cut(s)	957
BaeGI	GKGCMC	2 cut(s)	224, 2761
BamHI	GGATCC	1 cut(s)	535
BanII	GRGCYC	2 cut(s)	224, 342
BauI	CACGAG	1 cut(s)	306
BbsI	GAAGAC	3 cut(s)	1520, 1955, 2464
Bbv12I	GWGCWC	2 cut(s)	616, 2761
BbvI	GCAGC	4 cut(s)	298, 1309, 1590, 1593
BccI	CCATC	6 cut(s)	166, 1109, 1391, 1586, 1780, 1850
BceAI	ACGGC	4 cut(s)	128, 1005, 1583, 2140
BcgI	CGANNNNNNTGC	6 cut(s)	72, 106, 121, 155, 740, 774
BciT130I	CCWGG	5 cut(s)	294, 836, 1449, 1848, 2714
BciVI	GTATCC	1 cut(s)	1854
BclI	TGATCA	1 cut(s)	1402
BcnI	CCSGG	2 cut(s)	394, 1040
BcoDI	GTCTC	9 cut(s)	668, 914, 1059, 1112, 1560, 1896, 1982, 2566, 2787
BfaI	CTAG	6 cut(s)	27, 1317, 1436, 1701, 1935, 2564
BfmI	CTRYAG	3 cut(s)	572, 1326, 2462
BfoI	RGCGCY	1 cut(s)	1283
BfrI	CTTAAG	2 cut(s)	2132, 2785
BfuI	GTATCC	1 cut(s)	1854
BisI	GCNGC	5 cut(s)	312, 1323, 1604, 1607, 2380
BlpI	GCTNAGC	2 cut(s)	2258, 2370
BlsI	GCNGC	5 cut(s)	313, 1324, 1605, 1608, 2381
Bme1390I	CCNGG	7 cut(s)	294, 394, 836, 1040, 1449, 1848, 2714
Bme18I	GGWCC	7 cut(s)	296, 486, 561, 1001, 1371, 1931, 2020
BmeT110I	CYCGRG	2 cut(s)	335, 1367
BmiI	GGNNCC	6 cut(s)	222, 298, 537, 1372, 1388, 2711
BmrFI	CCNGG	7 cut(s)	294, 394, 836, 1040, 1449, 1848, 2714
BmrI	ACTGGG	1 cut(s)	2307
BmsI	GCATC	3 cut(s)	659, 893, 2119
BmuI	ACTGGG	1 cut(s)	2307
BpiI	GAAGAC	3 cut(s)	1520, 1955, 2464
BpmI	CTGGAG	1 cut(s)	600
Bpu1102I	GCTNAGC	2 cut(s)	2258, 2370
BpuEI	CTTGAG	2 cut(s)	1743, 1890
BpuMI	CCSGG	2 cut(s)	394, 1040
BsaBI	GATNNNNATC	4 cut(s)	164, 386, 597, 1401
BsaHI	GRCGYC	2 cut(s)	1052, 1569
BsaI	GGTCTC	2 cut(s)	1112, 1982
BsaJI	CCNNGG	4 cut(s)	279, 835, 1465, 2406
BsaWI	WCCGGW	2 cut(s)	265, 2318
BsaXI	ACNNNNNCTCC	4 cut(s)	247, 277, 341, 371
Bsc4I	CCNNNNNNNGG	7 cut(s)	900, 1705, 1994, 2086, 2318, 2554, 2671
Bse118I	RCCGGY	2 cut(s)	439, 443
Bse1I	ACTGG	5 cut(s)	617, 1130, 1522, 1999, 2313
Bse21I	CCTNAGG	1 cut(s)	957
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	4 cut(s)	164, 386, 597, 1401
BseAI	TCCGGA	1 cut(s)	265
BseBI	CCWGG	5 cut(s)	294, 836, 1449, 1848, 2714
BseDI	CCNNGG	4 cut(s)	279, 835, 1465, 2406
BseGI	GGATG	5 cut(s)	595, 799, 1134, 2311, 2740
BseJI	GATNNNNATC	4 cut(s)	164, 386, 597, 1401
BseLI	CCNNNNNNNGG	7 cut(s)	900, 1705, 1994, 2086, 2318, 2554, 2671
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	4 cut(s)	70, 222, 1073, 1857
BseNI	ACTGG	5 cut(s)	617, 1130, 1522, 1999, 2313
BseRI	GAGGAG	3 cut(s)	252, 362, 1644
BseSI	GKGCMC	2 cut(s)	224, 2761
BseX3I	CGGCCG	1 cut(s)	441
BseXI	GCAGC	4 cut(s)	298, 1309, 1590, 1593
BseYI	CCCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	1962
Bsh1236I	CGCG	1 cut(s)	2382
Bsh1285I	CGRYCG	2 cut(s)	444, 2805
BshFI	GGCC	8 cut(s)	208, 222, 274, 443, 1120, 1598, 2379, 2712
BsiEI	CGRYCG	2 cut(s)	444, 2805
BsiHKAI	GWGCWC	2 cut(s)	616, 2761
BsiHKCI	CYCGRG	2 cut(s)	335, 1367
BsiSI	CCGG	8 cut(s)	266, 393, 440, 444, 468, 1040, 2319, 2610
BslI	CCNNNNNNNGG	7 cut(s)	900, 1705, 1994, 2086, 2318, 2554, 2671
BsmAI	GTCTC	9 cut(s)	668, 914, 1059, 1112, 1560, 1896, 1982, 2566, 2787
BsmBI	CGTCTC	2 cut(s)	1059, 1560
BsmI	GAATGC	2 cut(s)	1919, 2590
BsnI	GGCC	8 cut(s)	208, 222, 274, 443, 1120, 1598, 2379, 2712
Bso31I	GGTCTC	2 cut(s)	1112, 1982
BsoBI	CYCGRG	2 cut(s)	335, 1367
Bsp120I	GGGCCC	1 cut(s)	220
Bsp1286I	GDGCHC	4 cut(s)	224, 342, 616, 2761
Bsp13I	TCCGGA	1 cut(s)	265
Bsp1720I	GCTNAGC	2 cut(s)	2258, 2370
Bsp19I	CCATGG	1 cut(s)	2406
BspACI	CCGC	3 cut(s)	5, 1359, 2380
BspANI	GGCC	8 cut(s)	208, 222, 274, 443, 1120, 1598, 2379, 2712
BspCNI	CTCAG	4 cut(s)	69, 223, 1074, 1858
BspEI	TCCGGA	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	2382
BspHI	TCATGA	1 cut(s)	2542
BspLI	GGNNCC	6 cut(s)	222, 298, 537, 1372, 1388, 2711
BspMAI	CTGCAG	2 cut(s)	576, 2466
BspPI	GGATC	7 cut(s)	326, 530, 543, 1433, 1726, 2321, 2515
BspTI	CTTAAG	2 cut(s)	2132, 2785
BspTNI	GGTCTC	2 cut(s)	1112, 1982
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	2 cut(s)	439, 443
BsrI	ACTGG	5 cut(s)	617, 1130, 1522, 1999, 2313
BssAI	RCCGGY	2 cut(s)	439, 443
BssECI	CCNNGG	4 cut(s)	279, 835, 1465, 2406
BssNAI	GTATAC	2 cut(s)	1803, 2599
BssNI	GRCGYC	2 cut(s)	1052, 1569
BssSI	CACGAG	1 cut(s)	306
BssT1I	CCWWGG	2 cut(s)	279, 2406
Bst1107I	GTATAC	2 cut(s)	1803, 2599
Bst2BI	CACGAG	1 cut(s)	306
Bst2UI	CCWGG	5 cut(s)	294, 836, 1449, 1848, 2714
Bst4CI	ACNGT	6 cut(s)	246, 717, 1330, 1411, 2671, 2698
Bst6I	CTCTTC	6 cut(s)	313, 1846, 2098, 2177, 2243, 2406
BstACI	GRCGYC	2 cut(s)	1052, 1569
BstAFI	CTTAAG	2 cut(s)	2132, 2785
BstC8I	GCNNGC	4 cut(s)	441, 1284, 1361, 2367
BstDEI	CTNAG	7 cut(s)	56, 231, 957, 1082, 1866, 2258, 2370
BstDSI	CCRYGG	1 cut(s)	2406
BstF5I	GGATG	5 cut(s)	595, 799, 1134, 2311, 2740
BstFNI	CGCG	1 cut(s)	2382
BstH2I	RGCGCY	1 cut(s)	1283
BstHHI	GCGC	4 cut(s)	95, 106, 1282, 1553
BstMAI	GTCTC	9 cut(s)	668, 914, 1059, 1112, 1560, 1896, 1982, 2566, 2787
BstMCI	CGRYCG	2 cut(s)	444, 2805
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 236, 890, 1279, 2371, 2585
BstNI	CCWGG	5 cut(s)	294, 836, 1449, 1848, 2714
BstNSI	RCATGY	3 cut(s)	436, 1644, 2681
BstSCI	CCNGG	7 cut(s)	292, 392, 834, 1038, 1447, 1846, 2712
BstSFI	CTRYAG	3 cut(s)	572, 1326, 2462
BstSLI	GKGCMC	2 cut(s)	224, 2761
BstUI	CGCG	1 cut(s)	2382
BstV1I	GCAGC	4 cut(s)	298, 1309, 1590, 1593
BstV2I	GAAGAC	3 cut(s)	1520, 1955, 2464
BstX2I	RGATCY	2 cut(s)	535, 1718
BstXI	CCANNNNNNTGG	3 cut(s)	410, 1593, 2167
BstYI	RGATCY	2 cut(s)	535, 1718
BstZ17I	GTATAC	2 cut(s)	1803, 2599
BstZI	CGGCCG	1 cut(s)	441
Bsu36I	CCTNAGG	1 cut(s)	957
BsuI	GTATCC	1 cut(s)	1854
BsuRI	GGCC	8 cut(s)	208, 222, 274, 443, 1120, 1598, 2379, 2712
BtgI	CCRYGG	1 cut(s)	2406
BtsCI	GGATG	5 cut(s)	595, 799, 1134, 2311, 2740
BtsI	GCAGTG	3 cut(s)	1884, 2172, 2471
BtsIMutI	CAGTG	8 cut(s)	251, 616, 992, 1416, 1884, 2172, 2471, 2676
Cac8I	GCNNGC	4 cut(s)	441, 1284, 1361, 2367
CaiI	CAGNNNCTG	1 cut(s)	230
CciI	TCATGA	1 cut(s)	2542
CfoI	GCGC	4 cut(s)	95, 106, 1282, 1553
Cfr10I	RCCGGY	2 cut(s)	439, 443
CseI	GACGC	3 cut(s)	1041, 2251, 2371
Csp6I	GTAC	5 cut(s)	823, 1163, 1462, 2316, 2567
CviQI	GTAC	5 cut(s)	823, 1163, 1462, 2316, 2567
DdeI	CTNAG	7 cut(s)	56, 231, 957, 1082, 1866, 2258, 2370
EaeI	YGGCCR	1 cut(s)	441
EagI	CGGCCG	1 cut(s)	441
Eam1104I	CTCTTC	6 cut(s)	313, 1846, 2098, 2177, 2243, 2406
EarI	CTCTTC	6 cut(s)	313, 1846, 2098, 2177, 2243, 2406
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	441
Eco130I	CCWWGG	2 cut(s)	279, 2406
Eco24I	GRGCYC	2 cut(s)	224, 342
Eco31I	GGTCTC	2 cut(s)	1112, 1982
Eco32I	GATATC	2 cut(s)	166, 781
Eco47I	GGWCC	7 cut(s)	296, 486, 561, 1001, 1371, 1931, 2020
Eco47III	AGCGCT	1 cut(s)	1281
Eco52I	CGGCCG	1 cut(s)	441
Eco81I	CCTNAGG	1 cut(s)	957
Eco88I	CYCGRG	2 cut(s)	335, 1367
EcoO109I	RGGNCCY	4 cut(s)	296, 561, 1371, 2710
EcoRII	CCWGG	5 cut(s)	292, 834, 1447, 1846, 2712
EcoRV	GATATC	2 cut(s)	166, 781
EcoT14I	CCWWGG	2 cut(s)	279, 2406
EcoT22I	ATGCAT	1 cut(s)	1104
EcoT38I	GRGCYC	2 cut(s)	224, 342
ErhI	CCWWGG	2 cut(s)	279, 2406
Esp3I	CGTCTC	2 cut(s)	1059, 1560
FauI	CCCGC	1 cut(s)	1352
FauNDI	CATATG	2 cut(s)	818, 2512
FbaI	TGATCA	1 cut(s)	1402
FblI	GTMKAC	3 cut(s)	1802, 2451, 2598
Fnu4HI	GCNGC	5 cut(s)	312, 1323, 1604, 1607, 2380
FokI	GGATG	5 cut(s)	602, 806, 1141, 2318, 2747
FriOI	GRGCYC	2 cut(s)	224, 342
Fsp4HI	GCNGC	5 cut(s)	312, 1323, 1604, 1607, 2380
FspBI	CTAG	6 cut(s)	27, 1317, 1436, 1701, 1935, 2564
GlaI	GCGC	4 cut(s)	94, 105, 1281, 1552
GluI	GCNGC	5 cut(s)	312, 1323, 1604, 1607, 2380
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	600
HaeII	RGCGCY	1 cut(s)	1283
HaeIII	GGCC	8 cut(s)	208, 222, 274, 443, 1120, 1598, 2379, 2712
HapII	CCGG	8 cut(s)	266, 393, 440, 444, 468, 1040, 2319, 2610
HgaI	GACGC	3 cut(s)	1041, 2251, 2371
HhaI	GCGC	4 cut(s)	95, 106, 1282, 1553
Hin1I	GRCGYC	2 cut(s)	1052, 1569
Hin6I	GCGC	4 cut(s)	93, 104, 1280, 1551
HinP1I	GCGC	4 cut(s)	93, 104, 1280, 1551
HindIII	AAGCTT	1 cut(s)	2363
HpaII	CCGG	8 cut(s)	266, 393, 440, 444, 468, 1040, 2319, 2610
HphI	GGTGA	5 cut(s)	382, 458, 1124, 1412, 1745
Hpy99I	CGWCG	1 cut(s)	2267
HpyAV	CCTTC	9 cut(s)	312, 727, 908, 986, 1400, 1759, 1831, 2247, 2485
HpyCH4III	ACNGT	6 cut(s)	246, 717, 1330, 1411, 2671, 2698
HpyCH4IV	ACGT	2 cut(s)	1569, 2781
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 236, 890, 1279, 2371, 2585
HpyF3I	CTNAG	7 cut(s)	56, 231, 957, 1082, 1866, 2258, 2370
HpySE526I	ACGT	2 cut(s)	1569, 2781
Hsp92I	GRCGYC	2 cut(s)	1052, 1569
HspAI	GCGC	4 cut(s)	93, 104, 1280, 1551
Kpn2I	TCCGGA	1 cut(s)	265
KroI	GCCGGC	1 cut(s)	439
KroNI	GCCGGC	1 cut(s)	441
Ksp22I	TGATCA	1 cut(s)	1402
LmnI	GCTCC	2 cut(s)	619, 2674
Lsp1109I	GCAGC	4 cut(s)	298, 1309, 1590, 1593
LweI	GCATC	3 cut(s)	659, 893, 2119
MaeI	CTAG	6 cut(s)	27, 1317, 1436, 1701, 1935, 2564
MaeII	ACGT	2 cut(s)	1569, 2781
MaeIII	GTNAC	6 cut(s)	376, 811, 1636, 1733, 1823, 2026
MflI	RGATCY	2 cut(s)	535, 1718
MhlI	GDGCHC	4 cut(s)	224, 342, 616, 2761
MlyI	GAGTC	4 cut(s)	557, 2194, 2568, 2569
MmeI	TCCRAC	2 cut(s)	1165, 2802
Mph1103I	ATGCAT	1 cut(s)	1104
MroI	TCCGGA	1 cut(s)	265
MroNI	GCCGGC	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	2690
MslI	CAYNNNNRTG	2 cut(s)	513, 1591
MspA1I	CMGCKG	1 cut(s)	1033
MspCI	CTTAAG	2 cut(s)	2132, 2785
MspI	CCGG	8 cut(s)	266, 393, 440, 444, 468, 1040, 2319, 2610
MspR9I	CCNGG	7 cut(s)	294, 394, 836, 1040, 1449, 1848, 2714
Mva1269I	GAATGC	2 cut(s)	1919, 2590
MvaI	CCWGG	5 cut(s)	294, 836, 1449, 1848, 2714
MvnI	CGCG	1 cut(s)	2382
MwoI	GCNNNNNNNGC	6 cut(s)	101, 236, 890, 1279, 2371, 2585
NaeI	GCCGGC	1 cut(s)	441
NciI	CCSGG	2 cut(s)	394, 1040
NcoI	CCATGG	1 cut(s)	2406
NdeI	CATATG	2 cut(s)	818, 2512
NgoMIV	GCCGGC	1 cut(s)	439
NlaIV	GGNNCC	6 cut(s)	222, 298, 537, 1372, 1388, 2711
NmuCI	GTSAC	5 cut(s)	376, 811, 1636, 1733, 1823
NsiI	ATGCAT	1 cut(s)	1104
NspI	RCATGY	3 cut(s)	436, 1644, 2681
PagI	TCATGA	1 cut(s)	2542
PciI	ACATGT	2 cut(s)	432, 1640
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PctI	GAATGC	2 cut(s)	1919, 2590
PdiI	GCCGGC	1 cut(s)	441
PdmI	GAANNNNTTC	1 cut(s)	2690
PfeI	GAWTC	9 cut(s)	577, 827, 862, 1132, 2174, 2191, 2284, 2534, 2774
PflMI	CCANNNNNTGG	3 cut(s)	1994, 2554, 2671
PfoI	TCCNGGA	1 cut(s)	1846
PkrI	GCNGC	5 cut(s)	313, 1324, 1605, 1608, 2381
Ple19I	CGATCG	1 cut(s)	2805
PleI	GAGTC	4 cut(s)	556, 2193, 2568, 2568
PpsI	GAGTC	4 cut(s)	556, 2193, 2568, 2568
PpuMI	RGGWCCY	3 cut(s)	296, 561, 1371
PscI	ACATGT	2 cut(s)	432, 1640
PsiI	TTATAA	1 cut(s)	807
Psp5II	RGGWCCY	3 cut(s)	296, 561, 1371
Psp6I	CCWGG	5 cut(s)	292, 834, 1447, 1846, 2712
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	5 cut(s)	292, 834, 1447, 1846, 2712
PspN4I	GGNNCC	6 cut(s)	222, 298, 537, 1372, 1388, 2711
PspOMI	GGGCCC	1 cut(s)	220
PspPPI	RGGWCCY	3 cut(s)	296, 561, 1371
PstI	CTGCAG	2 cut(s)	576, 2466
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	535, 1718
PvuI	CGATCG	1 cut(s)	2805
PvuII	CAGCTG	1 cut(s)	1033
RsaI	GTAC	5 cut(s)	824, 1164, 1463, 2317, 2568
RsaNI	GTAC	5 cut(s)	823, 1163, 1462, 2316, 2567
RseI	CAYNNNNRTG	2 cut(s)	513, 1591
SatI	GCNGC	5 cut(s)	312, 1323, 1604, 1607, 2380
SchI	GAGTC	4 cut(s)	557, 2194, 2568, 2569
ScrFI	CCNGG	7 cut(s)	294, 394, 836, 1040, 1449, 1848, 2714
SduI	GDGCHC	4 cut(s)	224, 342, 616, 2761
SfaNI	GCATC	3 cut(s)	659, 893, 2119
SfcI	CTRYAG	3 cut(s)	572, 1326, 2462
SinI	GGWCC	7 cut(s)	296, 486, 561, 1001, 1371, 1931, 2020
SmiMI	CAYNNNNRTG	2 cut(s)	513, 1591
SmlI	CTYRAG	4 cut(s)	1758, 1905, 2132, 2785
SmoI	CTYRAG	4 cut(s)	1758, 1905, 2132, 2785
SsiI	CCGC	3 cut(s)	5, 1359, 2380
SspI	AATATT	1 cut(s)	1139
SspMI	CTAG	6 cut(s)	27, 1317, 1436, 1701, 1935, 2564
StyD4I	CCNGG	7 cut(s)	292, 392, 834, 1038, 1447, 1846, 2712
StyI	CCWWGG	2 cut(s)	279, 2406
TaaI	ACNGT	6 cut(s)	246, 717, 1330, 1411, 2671, 2698
TaiI	ACGT	2 cut(s)	1572, 2784
TaqI	TCGA	8 cut(s)	546, 657, 936, 1395, 2434, 2625, 2801, 2805
TatI	WGTACW	2 cut(s)	1162, 2566
TauI	GCSGC	1 cut(s)	2382
TfiI	GAWTC	9 cut(s)	577, 827, 862, 1132, 2174, 2191, 2284, 2534, 2774
TscAI	CASTG	8 cut(s)	251, 616, 999, 1416, 1884, 2172, 2471, 2676
TseFI	GTSAC	5 cut(s)	376, 811, 1636, 1733, 1823
TseI	GCWGC	4 cut(s)	311, 1322, 1603, 1606
Tsp45I	GTSAC	5 cut(s)	376, 811, 1636, 1733, 1823
TspDTI	ATGAA	9 cut(s)	609, 726, 1005, 1109, 2051, 2055, 2261, 2322, 2526
TspGWI	ACGGA	3 cut(s)	494, 874, 2469
TspRI	CASTG	8 cut(s)	251, 616, 999, 1416, 1884, 2172, 2471, 2676
Van91I	CCANNNNNTGG	3 cut(s)	1994, 2554, 2671
Vha464I	CTTAAG	2 cut(s)	2132, 2785
VneI	GTGCAC	1 cut(s)	2757
VpaK11BI	GGWCC	7 cut(s)	296, 486, 561, 1001, 1371, 1931, 2020
XapI	RAATTY	7 cut(s)	460, 491, 850, 1537, 1871, 2442, 2621
XbaI	TCTAGA	1 cut(s)	1435
XceI	RCATGY	3 cut(s)	436, 1644, 2681
XcmI	CCANNNNNNNNNTGG	3 cut(s)	30, 496, 2404
XmiI	GTMKAC	3 cut(s)	1802, 2451, 2598
XmnI	GAANNNNTTC	1 cut(s)	2690
XspI	CTAG	6 cut(s)	27, 1317, 1436, 1701, 1935, 2564
ZraI	GACGTC	1 cut(s)	1570
Zsp2I	ATGCAT	1 cut(s)	1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.