Rroxscaffold_3G00272520

ABC transporter A family member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
64618085 .. 64624681
6597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00272520.1

Sequence Viewer

Length: 1929 bp
ATGTTTGCTACTGTTTCTCAAGTTCAGGCAAGCATTTCAATGCCGGAGGAGTCATCTGATCATGGCCGTGCCAGCTTCTGGACTCGAGCAAATGCTCTGCTCAGAAAGAACTTAACTTTCCAGAAACGGAATATGAAACAGAATGTTCGGCTTGTTTCAGTCCCAATTTTGCTATGTATAATGCTCCTTCTCATCCAAATTTTGGTCAACCATGAACTGGACAAGCCTGAGAATAGGTGTGGCTGTGTTTGTGTTGATACTAACGGAGACGGCGAATGTGAGAAAGTTTGTGGACTGGAATACTCAACTGTGGATCAAGGGTTCACTTGTCCCATTCCTCATCCCCCGGAATGGCCGCCATTGCTTCAAGTGCCGAATCCTGAATTTCGTGCGGTGATATCTGACGTTGTTCCATATAAAGACTTGCCGAGTGAGTCGTGCAAGAGGACAGGATCTTGTCCTGTAACCGTATTGTTCACCGGGAGTAATCATTCGATGGGGGAAGCTTATGACTTCTCTAACTCAAATATGAACAACTTTAATGTAAGCATATGGTACAATTCAACCTTTAAGAATGACACAGGCAATAGTCCTATTGCTTTGCTGCGGCTTCCACGCTCAGTAAATTTGGTATCCAATGCGTACCTTCAGTTTTTGCTAGGATCTGGTACAAACATGTTGCTTGAGTTTGTCAAAGAAATGCCCAAGCCCGAAACCAGTCTCAGGCTGGACTTTTCTTCTCTTATTGGAGGTTGGATCACTGTTCTAGAGCTATATCCTGGCTTCTCTCTGTATCGCGGGTTATATGAGTTTGCTCAATACTCCTTCAAAGGGGATTATATGGGGACTGATGGGATGCGGTGGCGAGATTTGAGTGACAGAGAGAATGGGATGAAAGAGGTCTGGATTATCATGGCTGTCGAGTGGTTTGTGGTGCTTTTTCTTGCATATTGCCTAGATCAAGCTGTATCATCATCAGGAAGTGTGAAATATCCTTTATTTTTCTTTCAAAGCGGAAGGAAGAAACTGTCATCTCGTAGGATGCATTCTTTGCAAAGGCAGGAATCTGAAGTGCTTATTCAGACAGACAAACCTGATGTTGGGCAAGAGATGATTGGTCTGACAAAGTCAACCTCTGGCACGGCTTTTGTTCAAGGTCTGGACATCAACACTCAGATGGATGAAATATATACCAGCATGGGAGTTTGTCCACAGCATGACCTACTATGGGAAACCCTAACTGGAAGGGAGCATCTACTTTTTTATGGAAGACTTAAGAACCTCAAAGGTTCTGGATTAAGACAAGCAGTGGAAGAATCTTTGAAAAGTGTCAGTCTATTTCATGGTGGGGTTGCAGACAAAAGAGCTGGAAAGTATAGTGGAGGCATGAAGAGAAGGCTTAGCGTCGCAATTTCACTTATAGGTGATCCTAAAGTTGTTTACATGGATGAGCCCAGCACTGGACTTGATCCAGCTTCAAGACATAATCTATGGACTGTTGTGAAGCGGGCAAAACAAGATCGTGCAATCATCCTAACAACACATTCCATGGAAGAGGCAGAGGTTCTATGTGATCGTTTAGGAGTTTTTGTAGATGGCAGCTTGCAGTGCATAGGAAACCCAAAAGAGCTGAAAGCCAGATATGGAGGATCTTATGTGTTTACAATGACGACATCTTCAAATCACGAGGAAGAGGTGGAGAACTTAGTGCGGAGTCTCTCCCCAGATGCTAATAAGATATACCATCTCTCTGGAACCCAGAAGTTTGAGTTGCCGAAACATGAAGTCAAAATTGCAGATGTATTCCAAGCCGTTGAGAATGCAAAGAGCAAGTTCACAGTTTTTGCATGGGGTCTAGCTGACACTACCTTGGAGGATGTTTTCATCAAGGTCGCACTTGGGGCTCAAGCGTCCAATATCTTGGCATAA

Protein Analysis

642

Amino Acids

71.77

Weight (kDa)

6.27

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 371 - 486 2.2e-11 ABC transporter
AAA_21 PF13304 455 - 518 1.8e-08 AAA domain, putative AbiEii toxin, Type IV TA system
ABCA12_C PF24526 552 - 602 3.8e-31 ABCA12-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 78, 202, 217
AccII CGCG 1 cut(s) 798
AciI CCGC 8 cut(s) 356, 392, 607, 798, 859, 1014, 1507, 1711
AclWI GGATC 7 cut(s) 321, 460, 670, 764, 1421, 1463, 1657
AcoI YGGCCR 2 cut(s) 64, 353
AcsI RAATTY 3 cut(s) 198, 383, 625
AcuI CTGAAG 2 cut(s) 632, 1089
AfaI GTAC 3 cut(s) 557, 644, 670
AfiI CCNNNNNNNGG 9 cut(s) 78, 202, 217, 351, 723, 831, 1100, 1228, 1460
AflII CTTAAG 1 cut(s) 1274
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 9 cut(s) 39, 368, 564, 829, 1010, 1154, 1324, 1479, 1680
AjnI CCWGG 1 cut(s) 778
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
AluBI AGCT 9 cut(s) 75, 506, 772, 965, 1367, 1475, 1602, 1630, 1859
AluI AGCT 9 cut(s) 75, 506, 772, 965, 1367, 1475, 1602, 1630, 1859
Alw26I GTCTC 3 cut(s) 261, 725, 1721
AlwI GGATC 7 cut(s) 321, 460, 670, 764, 1421, 1463, 1657
AlwNI CAGNNNCTG 1 cut(s) 78
Ama87I CYCGRG 1 cut(s) 84
AoxI GGCC 2 cut(s) 64, 353
ApeKI GCWGC 2 cut(s) 604, 1599
ApoI RAATTY 3 cut(s) 198, 383, 625
AsuC2I CCSGG 2 cut(s) 347, 481
AsuHPI GGTGA 3 cut(s) 406, 469, 1436
AvaI CYCGRG 1 cut(s) 84
BanII GRGCYC 2 cut(s) 1455, 1906
BauI CACGAG 1 cut(s) 1685
BbsI GAAGAC 1 cut(s) 1276
BbvI GCAGC 2 cut(s) 591, 1611
BccI CCATC 5 cut(s) 490, 845, 1171, 1589, 1752
BceAI ACGGC 4 cut(s) 51, 286, 1158, 1796
BciT130I CCWGG 1 cut(s) 780
BciVI GTATCC 1 cut(s) 643
BclI TGATCA 1 cut(s) 58
BcnI CCSGG 2 cut(s) 347, 481
BcoDI GTCTC 3 cut(s) 261, 725, 1721
BfaI CTAG 4 cut(s) 659, 767, 956, 1856
BfrI CTTAAG 1 cut(s) 1274
BfuI GTATCC 1 cut(s) 643
BisI GCNGC 4 cut(s) 356, 605, 608, 1600
BlpI GCTNAGC 1 cut(s) 1400
BlsI GCNGC 4 cut(s) 357, 606, 609, 1601
Bme1390I CCNGG 3 cut(s) 347, 481, 780
BmeT110I CYCGRG 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 1756
BmrFI CCNGG 3 cut(s) 347, 481, 780
BmsI GCATC 4 cut(s) 846, 1032, 1261, 1717
BpiI GAAGAC 1 cut(s) 1276
Bpu1102I GCTNAGC 1 cut(s) 1400
BpuEI CTTGAG 2 cut(s) 704, 1890
BpuMI CCSGG 2 cut(s) 347, 481
BsaJI CCNNGG 3 cut(s) 345, 1548, 1869
BsaXI ACNNNNNCTCC 2 cut(s) 1575, 1605
Bsc4I CCNNNNNNNGG 9 cut(s) 78, 202, 217, 351, 723, 831, 1100, 1228, 1460
Bse1I ACTGG 5 cut(s) 222, 300, 717, 1246, 1465
Bse3DI GCAATG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 780
BseDI CCNNGG 3 cut(s) 345, 1548, 1869
BseGI GGATG 9 cut(s) 192, 340, 861, 897, 1047, 1186, 1453, 1530, 1882
BseLI CCNNNNNNNGG 9 cut(s) 78, 202, 217, 351, 723, 831, 1100, 1228, 1460
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 5 cut(s) 115, 219, 633, 736, 1187
BseNI ACTGG 5 cut(s) 222, 300, 717, 1246, 1465
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 2 cut(s) 591, 1611
BseYI CCCAGC 1 cut(s) 1454
Bsh1236I CGCG 1 cut(s) 798
BshFI GGCC 2 cut(s) 66, 355
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 3 cut(s) 44, 347, 480
BslFI GGGAC 3 cut(s) 146, 315, 859
BslI CCNNNNNNNGG 9 cut(s) 78, 202, 217, 351, 723, 831, 1100, 1228, 1460
BsmAI GTCTC 3 cut(s) 261, 725, 1721
BsmBI CGTCTC 1 cut(s) 261
BsmFI GGGAC 3 cut(s) 146, 315, 859
BsmI GAATGC 2 cut(s) 1045, 1825
BsnI GGCC 2 cut(s) 66, 355
BsoBI CYCGRG 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 1455, 1906
Bsp1720I GCTNAGC 1 cut(s) 1400
Bsp19I CCATGG 1 cut(s) 1548
BspACI CCGC 8 cut(s) 356, 392, 607, 798, 859, 1014, 1507, 1711
BspANI GGCC 2 cut(s) 66, 355
BspCNI CTCAG 5 cut(s) 114, 220, 632, 735, 1186
BspFNI CGCG 1 cut(s) 798
BspLI GGNNCC 1 cut(s) 1756
BspPI GGATC 7 cut(s) 321, 460, 670, 764, 1421, 1463, 1657
BspTI CTTAAG 1 cut(s) 1274
BsrDI GCAATG 1 cut(s) 359
BsrI ACTGG 5 cut(s) 222, 300, 717, 1246, 1465
BssECI CCNNGG 3 cut(s) 345, 1548, 1869
BssSI CACGAG 1 cut(s) 1685
BssT1I CCWWGG 2 cut(s) 1548, 1869
Bst2BI CACGAG 1 cut(s) 1685
Bst2UI CCWGG 1 cut(s) 780
Bst4CI ACNGT 7 cut(s) 13, 310, 469, 763, 1029, 1498, 1840
Bst6I CTCTTC 3 cut(s) 1385, 1548, 1686
BstAFI CTTAAG 1 cut(s) 1274
BstAPI GCANNNNNTGC 1 cut(s) 1051
BstC8I GCNNGC 4 cut(s) 31, 73, 1509, 1604
BstDEI CTNAG 7 cut(s) 101, 228, 619, 722, 1173, 1400, 1705
BstDSI CCRYGG 1 cut(s) 1548
BstF5I GGATG 9 cut(s) 192, 340, 861, 897, 1047, 1186, 1453, 1530, 1882
BstFNI CGCG 1 cut(s) 798
BstMAI GTCTC 3 cut(s) 261, 725, 1721
BstMWI GCNNNNNNNGC 6 cut(s) 72, 361, 370, 1051, 1608, 1901
BstNI CCWGG 1 cut(s) 780
BstNSI RCATGY 1 cut(s) 679
BstSCI CCNGG 3 cut(s) 345, 479, 778
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 2 cut(s) 591, 1611
BstV2I GAAGAC 1 cut(s) 1276
BstX2I RGATCY 3 cut(s) 452, 662, 1649
BstXI CCANNNNNNTGG 2 cut(s) 1751, 1921
BstYI RGATCY 3 cut(s) 452, 662, 1649
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 2 cut(s) 66, 355
BtgI CCRYGG 1 cut(s) 1548
BtsCI GGATG 9 cut(s) 192, 340, 861, 897, 1047, 1186, 1453, 1530, 1882
BtsI GCAGTG 2 cut(s) 1314, 1613
BtsIMutI CAGTG 4 cut(s) 759, 1314, 1458, 1613
Cac8I GCNNGC 4 cut(s) 31, 73, 1509, 1604
CaiI CAGNNNCTG 1 cut(s) 78
CseI GACGC 2 cut(s) 1393, 1899
Csp6I GTAC 3 cut(s) 556, 643, 669
CviQI GTAC 3 cut(s) 556, 643, 669
DdeI CTNAG 7 cut(s) 101, 228, 619, 722, 1173, 1400, 1705
EaeI YGGCCR 2 cut(s) 64, 353
Eam1104I CTCTTC 3 cut(s) 1385, 1548, 1686
EarI CTCTTC 3 cut(s) 1385, 1548, 1686
Eco130I CCWWGG 2 cut(s) 1548, 1869
Eco24I GRGCYC 2 cut(s) 1455, 1906
Eco32I GATATC 1 cut(s) 399
Eco57I CTGAAG 2 cut(s) 632, 1089
Eco88I CYCGRG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 778
EcoRV GATATC 1 cut(s) 399
EcoT14I CCWWGG 2 cut(s) 1548, 1869
EcoT22I ATGCAT 1 cut(s) 1047
EcoT38I GRGCYC 2 cut(s) 1455, 1906
ErhI CCWWGG 2 cut(s) 1548, 1869
Esp3I CGTCTC 1 cut(s) 261
FaqI GGGAC 3 cut(s) 146, 315, 859
FauI CCCGC 2 cut(s) 791, 1500
FauNDI CATATG 1 cut(s) 551
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 4 cut(s) 356, 605, 608, 1600
FokI GGATG 9 cut(s) 179, 327, 868, 904, 1054, 1193, 1460, 1517, 1889
FriOI GRGCYC 2 cut(s) 1455, 1906
Fsp4HI GCNGC 4 cut(s) 356, 605, 608, 1600
FspBI CTAG 4 cut(s) 659, 767, 956, 1856
GluI GCNGC 4 cut(s) 356, 605, 608, 1600
GsaI CCCAGC 1 cut(s) 1458
HaeIII GGCC 2 cut(s) 66, 355
HapII CCGG 3 cut(s) 44, 347, 480
HgaI GACGC 2 cut(s) 1393, 1899
HincII GTYRAC 2 cut(s) 208, 1131
HindII GTYRAC 2 cut(s) 208, 1131
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 7 cut(s) 50, 82, 376, 434, 1064, 1316, 1714
HpaII CCGG 3 cut(s) 44, 347, 480
HphI GGTGA 3 cut(s) 406, 469, 1436
Hpy166II GTNNAC 9 cut(s) 208, 293, 324, 477, 1131, 1211, 1441, 1662, 1836
Hpy188I TCNGA 7 cut(s) 58, 104, 403, 1069, 1083, 1122, 1176
Hpy8I GTNNAC 9 cut(s) 208, 293, 324, 477, 1131, 1211, 1441, 1662, 1836
Hpy99I CGWCG 1 cut(s) 1409
HpyAV CCTTC 6 cut(s) 197, 656, 835, 1011, 1239, 1389
HpyCH4III ACNGT 7 cut(s) 13, 310, 469, 763, 1029, 1498, 1840
HpyCH4IV ACGT 1 cut(s) 405
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 361, 370, 1051, 1608, 1901
HpyF3I CTNAG 7 cut(s) 101, 228, 619, 722, 1173, 1400, 1705
HpySE526I ACGT 1 cut(s) 405
Ksp22I TGATCA 1 cut(s) 58
LmnI GCTCC 2 cut(s) 189, 1249
Lsp1109I GCAGC 2 cut(s) 591, 1611
LweI GCATC 4 cut(s) 846, 1032, 1261, 1717
MaeI CTAG 4 cut(s) 659, 767, 956, 1856
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 2 cut(s) 463, 875
MboII GAAGA 8 cut(s) 729, 1033, 1281, 1325, 1402, 1565, 1668, 1703
MflI RGATCY 3 cut(s) 452, 662, 1649
MhlI GDGCHC 2 cut(s) 1455, 1906
MluCI AATT 7 cut(s) 165, 198, 383, 559, 625, 1410, 1791
MlyI GAGTC 4 cut(s) 59, 76, 443, 1723
MmeI TCCRAC 1 cut(s) 734
Mph1103I ATGCAT 1 cut(s) 1047
MseI TTAA 5 cut(s) 113, 540, 570, 1275, 1298
MslI CAYNNNNRTG 3 cut(s) 38, 66, 1175
MspCI CTTAAG 1 cut(s) 1274
MspI CCGG 3 cut(s) 44, 347, 480
MspR9I CCNGG 3 cut(s) 347, 481, 780
Mva1269I GAATGC 2 cut(s) 1045, 1825
MvaI CCWGG 1 cut(s) 780
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 6 cut(s) 72, 361, 370, 1051, 1608, 1901
NciI CCSGG 2 cut(s) 347, 481
NcoI CCATGG 1 cut(s) 1548
NdeI CATATG 1 cut(s) 551
NlaIV GGNNCC 1 cut(s) 1756
NmeAIII GCCGAG 1 cut(s) 453
NmuCI GTSAC 1 cut(s) 875
NsiI ATGCAT 1 cut(s) 1047
NspI RCATGY 1 cut(s) 679
PaeR7I CTCGAG 1 cut(s) 84
PciI ACATGT 1 cut(s) 675
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 2 cut(s) 1045, 1825
PfeI GAWTC 3 cut(s) 376, 1064, 1316
PflFI GACNNNGTC 1 cut(s) 1126
PflMI CCANNNNNTGG 3 cut(s) 78, 202, 217
PkrI GCNGC 4 cut(s) 357, 606, 609, 1601
PleI GAGTC 4 cut(s) 58, 76, 442, 1722
PpsI GAGTC 4 cut(s) 58, 76, 442, 1722
PscI ACATGT 1 cut(s) 675
Psp6I CCWGG 1 cut(s) 778
PspFI CCCAGC 1 cut(s) 1454
PspGI CCWGG 1 cut(s) 778
PspN4I GGNNCC 1 cut(s) 1756
PspXI VCTCGAGB 1 cut(s) 84
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 3 cut(s) 452, 662, 1649
PsyI GACNNNGTC 1 cut(s) 1126
RsaI GTAC 3 cut(s) 557, 644, 670
RsaNI GTAC 3 cut(s) 556, 643, 669
RseI CAYNNNNRTG 3 cut(s) 38, 66, 1175
SaqAI TTAA 5 cut(s) 113, 540, 570, 1275, 1298
SatI GCNGC 4 cut(s) 356, 605, 608, 1600
SchI GAGTC 4 cut(s) 59, 76, 443, 1723
ScrFI CCNGG 3 cut(s) 347, 481, 780
SduI GDGCHC 2 cut(s) 1455, 1906
SfaNI GCATC 4 cut(s) 846, 1032, 1261, 1717
Sfr274I CTCGAG 1 cut(s) 84
SlaI CTCGAG 1 cut(s) 84
SmiMI CAYNNNNRTG 3 cut(s) 38, 66, 1175
SmlI CTYRAG 5 cut(s) 18, 84, 683, 1274, 1905
SmoI CTYRAG 5 cut(s) 18, 84, 683, 1274, 1905
Sse9I AATT 7 cut(s) 165, 198, 383, 559, 625, 1410, 1791
SsiI CCGC 8 cut(s) 356, 392, 607, 798, 859, 1014, 1507, 1711
SspMI CTAG 4 cut(s) 659, 767, 956, 1856
StyD4I CCNGG 3 cut(s) 345, 479, 778
StyI CCWWGG 2 cut(s) 1548, 1869
TaaI ACNGT 7 cut(s) 13, 310, 469, 763, 1029, 1498, 1840
TaiI ACGT 1 cut(s) 408
TaqI TCGA 3 cut(s) 85, 494, 921
TasI AATT 7 cut(s) 165, 198, 383, 559, 625, 1410, 1791
TauI GCSGC 2 cut(s) 358, 610
TfiI GAWTC 3 cut(s) 376, 1064, 1316
Tru1I TTAA 5 cut(s) 113, 540, 570, 1275, 1298
Tru9I TTAA 5 cut(s) 113, 540, 570, 1275, 1298
TscAI CASTG 4 cut(s) 766, 1314, 1465, 1613
TseFI GTSAC 1 cut(s) 875
TseI GCWGC 2 cut(s) 604, 1599
Tsp45I GTSAC 1 cut(s) 875
TspDTI ATGAA 9 cut(s) 149, 228, 545, 908, 1197, 1331, 1403, 1797, 1873
TspGWI ACGGA 2 cut(s) 142, 279
TspRI CASTG 4 cut(s) 766, 1314, 1465, 1613
Tth111I GACNNNGTC 1 cut(s) 1126
Van91I CCANNNNNTGG 3 cut(s) 78, 202, 217
Vha464I CTTAAG 1 cut(s) 1274
XapI RAATTY 3 cut(s) 198, 383, 625
XbaI TCTAGA 1 cut(s) 766
XceI RCATGY 1 cut(s) 679
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XhoI CTCGAG 1 cut(s) 84
XspI CTAG 4 cut(s) 659, 767, 956, 1856
Zsp2I ATGCAT 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.