Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025325.1

Orthogroup ID

OG0000814

Physical Location & Seq

Genomic Coordinates Forward (+)

4246 .. 6641

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025325.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggcgccggagcgttccgctgcgagcttctggactcagtccaatgccttgctcagaaagagcttaacatatcagaaaagaaacatccgctccaatatcaggctggttttaataccctttttcttcatcctcattttggctgccctccaaagtctgcagaagaatgtcaacaaacagttatcaaaacccgattgtggatcttcagaccaatttgatctaactgtatcttgtcccatacctcagcctcaagaatgggctccattgttgcagttaccatctagagattaccgtgcagtaagaagtagctttcttccatctgacttgccggatgagtcatgccggagtaggcgtgatgaaagaggctactcctcctgcccggtaacactacttcttactgggaataatcagtctttaggagaaactctggctggaaatatgttgttgaattctcccccgccgaaatccgctggtgatggcatggaatatatagcgcataatgtcatgggttcggattcctcacctcaagagaacatgtttcatgactatgactggtctaaggatgttgtgaccatctataatgtgcagcgccactgctcaccaaattcttcattctatcttccagttcgagaagcaagtttgcaaccaaaaatatcctatgatttctccaactcagataagaataatttcaatgtgagcgtatggtacaattcaagcttgaaatctggagatgatgatgttggcgaggtgctgagcggggctgggagtgattctaaattgttgcggcttccgcgtgcagtgaatctgagcccactacctaagatcgagatcatgggttcgagtcaccagggaagtaggagtaaaatcctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

289

Amino Acids

32.15

Weight (kDa)

8.22

Isoelectric Point (pI)

70.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47740 AT3G47750 AT3G47760 AT3G47760 AT3G47760 AT3G47770 AT3G47770 AT3G47770 AT3G47780 AT3G47790 AT3G47790 AT3G47790 AT5G61700 AT5G61700 AT5G61700 AT5G61700 AT5G61740 AT5G61740 AT5G61740
fragaria_vesca	FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g17020
malus_domestica	MD00G1160300.v1.1 MD06G1189700.v1.1 MD14G1196600.v1.1
prunus_persica	Prupe.5G188500_v2.0.a1 Prupe.5G188500_v2.0.a1 Prupe.5G188700_v2.0.a1 Prupe.5G229600_v2.0.a1 Prupe.5G229600_v2.0.a1
pyrus_communis	pycom06g16850 pycom14g16330
rosa_chinensis	RchiOBHm_Chr7g0178831 RchiOBHm_Chr7g0180791 RchiOBHm_Chr7g0180811
rosa_laevigata	RLG00000005228 RLG00000005229 RLG00000005411
rosa_multiflora	Rmu_sc0007457.1_g000007 Rmu_sc0007457.1_g000009 Rmu_sc0025325.1_g000002 Rmu_sc0025325.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272510 Rroxscaffold_3G00272520 Rroxscaffold_3G00274540
rosa_rugosa	Rorug01G0115100 Rorug06G0420100 Rorug06G0420100 Rorug06G0436000 Rorug06G0436100 Rorug06G0436200 Rorug06G0436300
rosa_samantha	Rh1BG107000 Rh7AG019400 Rh7AG037800 Rh7AG038000 Rh7BG018900 Rh7BG037600 Rh7BG037800 Rh7CG019500 Rh7CG039200 Rh7CG039300 Rh7DG019300
rosa_wichuraiana	Rw7G001580 Rw7G003120 Rw7G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	2 cut(s)	90, 753
AccII	CGCG	1 cut(s)	790
AciI	CCGC	7 cut(s)	18, 88, 455, 465, 753, 781, 788
AclWI	GGATC	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	445, 601
AcuI	CTGAAG	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	704
AfiI	CCNNNNNNNGG	3 cut(s)	99, 136, 194
AflIII	ACRYGT	1 cut(s)	531
AgsI	TTSAA	4 cut(s)	445, 688, 711, 718
AjnI	CCWGG	1 cut(s)	843
AluBI	AGCT	4 cut(s)	27, 63, 306, 714
AluI	AGCT	4 cut(s)	27, 63, 306, 714
AlwI	GGATC	1 cut(s)	205
ApeKI	GCWGC	3 cut(s)	20, 140, 583
ApoI	RAATTY	2 cut(s)	445, 601
Asp700I	GAANNNNTTC	1 cut(s)	683
AspLEI	GCGC	3 cut(s)	7, 493, 588
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	4 cut(s)	482, 510, 588, 833
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	259, 809
BarI	GAAGNNNNNNTAC	2 cut(s)	372, 404
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	7, 127, 595
BccI	CCATC	4 cut(s)	283, 322, 467, 578
BciT130I	CCWGG	1 cut(s)	845
BcnI	CCSGG	1 cut(s)	377
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	155
BfoI	RGCGCY	2 cut(s)	8, 589
BisI	GCNGC	4 cut(s)	21, 141, 584, 782
BlpI	GCTNAGC	1 cut(s)	749
BlsI	GCNGC	4 cut(s)	22, 142, 585, 783
Bme1390I	CCNGG	2 cut(s)	377, 845
BmiI	GGNNCC	2 cut(s)	6, 258
BmrFI	CCNGG	2 cut(s)	377, 845
BmrI	ACTGGG	1 cut(s)	405
BmuI	ACTGGG	1 cut(s)	405
BpmI	CTGGAG	1 cut(s)	744
Bpu10I	CCTNAGC	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	749
BpuEI	CTTGAG	2 cut(s)	231, 507
BpuMI	CCSGG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	824
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	844
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 334, 364
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 136, 194
Bse1I	ACTGG	3 cut(s)	400, 554, 620
Bse8I	GATNNNNATC	1 cut(s)	824
BseBI	CCWGG	1 cut(s)	845
BseDI	CCNNGG	1 cut(s)	844
BseGI	GGATG	4 cut(s)	84, 126, 334, 565
BseJI	GATNNNNATC	1 cut(s)	824
BseLI	CCNNNNNNNGG	3 cut(s)	99, 136, 194
BseMII	CTCAG	6 cut(s)	50, 67, 254, 684, 740, 794
BseNI	ACTGG	3 cut(s)	400, 554, 620
BseRI	GAGGAG	1 cut(s)	358
BseXI	GCAGC	3 cut(s)	7, 127, 595
BseYI	CCCAGC	1 cut(s)	758
BsgI	GTGCAG	3 cut(s)	312, 602, 813
Bsh1236I	CGCG	1 cut(s)	790
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	4 cut(s)	8, 326, 340, 377
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	3 cut(s)	99, 136, 194
BsmFI	GGGAC	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	259, 809
Bsp143I	GATC	4 cut(s)	197, 214, 819, 825
Bsp1720I	GCTNAGC	1 cut(s)	749
BspACI	CCGC	7 cut(s)	18, 88, 455, 465, 753, 781, 788
BspCNI	CTCAG	6 cut(s)	49, 66, 253, 683, 741, 795
BspFNI	CGCG	1 cut(s)	790
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	6, 258
BspMAI	CTGCAG	1 cut(s)	159
BspPI	GGATC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	2 cut(s)	90, 753
BsrI	ACTGG	3 cut(s)	400, 554, 620
BssECI	CCNNGG	1 cut(s)	844
BssMI	GATC	4 cut(s)	197, 214, 819, 825
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	845
Bst4CI	ACNGT	3 cut(s)	177, 223, 290
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	25, 792
BstDEI	CTNAG	8 cut(s)	36, 53, 240, 555, 670, 749, 803, 816
BstF5I	GGATG	4 cut(s)	84, 126, 334, 565
BstFNI	CGCG	1 cut(s)	790
BstH2I	RGCGCY	2 cut(s)	8, 589
BstHHI	GCGC	3 cut(s)	7, 493, 588
BstKTI	GATC	4 cut(s)	200, 217, 822, 828
BstMBI	GATC	4 cut(s)	197, 214, 819, 825
BstMWI	GCNNNNNNNGC	1 cut(s)	787
BstNI	CCWGG	1 cut(s)	845
BstNSI	RCATGY	1 cut(s)	535
BstSCI	CCNGG	2 cut(s)	375, 843
BstSFI	CTRYAG	1 cut(s)	155
BstUI	CGCG	1 cut(s)	790
BstV1I	GCAGC	3 cut(s)	7, 127, 595
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BtsCI	GGATG	4 cut(s)	84, 126, 334, 565
BtsI	GCAGTG	2 cut(s)	589, 801
BtsIMutI	CAGTG	2 cut(s)	589, 801
Cac8I	GCNNGC	2 cut(s)	25, 792
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	3 cut(s)	7, 493, 588
Csp6I	GTAC	1 cut(s)	703
CviAII	CATG	6 cut(s)	336, 478, 502, 532, 539, 829
CviQI	GTAC	1 cut(s)	703
DdeI	CTNAG	8 cut(s)	36, 53, 240, 555, 670, 749, 803, 816
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	199, 216, 821, 827
DpnII	GATC	4 cut(s)	197, 214, 819, 825
Eco24I	GRGCYC	2 cut(s)	259, 809
Eco57I	CTGAAG	1 cut(s)	186
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	843
EcoT38I	GRGCYC	2 cut(s)	259, 809
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	6 cut(s)	339, 481, 505, 535, 542, 832
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	6 cut(s)	335, 477, 501, 531, 538, 828
FauI	CCCGC	2 cut(s)	462, 746
Fnu4HI	GCNGC	4 cut(s)	21, 141, 584, 782
FokI	GGATG	4 cut(s)	71, 113, 341, 572
FriOI	GRGCYC	2 cut(s)	259, 809
Fsp4HI	GCNGC	4 cut(s)	21, 141, 584, 782
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	3 cut(s)	6, 492, 587
GluI	GCNGC	4 cut(s)	21, 141, 584, 782
GsaI	CCCAGC	1 cut(s)	762
GsuI	CTGGAG	1 cut(s)	744
HaeII	RGCGCY	2 cut(s)	8, 589
HapII	CCGG	4 cut(s)	8, 326, 340, 377
HhaI	GCGC	3 cut(s)	7, 493, 588
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	339, 481, 505, 535, 542, 832
Hin6I	GCGC	3 cut(s)	5, 491, 586
HinP1I	GCGC	3 cut(s)	5, 491, 586
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	712
HinfI	GANTC	6 cut(s)	34, 332, 512, 767, 799, 838
HpaII	CCGG	4 cut(s)	8, 326, 340, 377
HphI	GGTGA	4 cut(s)	482, 510, 588, 833
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	7 cut(s)	56, 75, 205, 319, 511, 673, 804
Hpy188III	TCNNGA	8 cut(s)	31, 248, 279, 524, 539, 626, 723, 823
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4III	ACNGT	3 cut(s)	177, 223, 290
HpyCH4V	TGCA	6 cut(s)	157, 268, 293, 583, 640, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	787
HpyF3I	CTNAG	8 cut(s)	36, 53, 240, 555, 670, 749, 803, 816
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	339, 481, 505, 535, 542, 832
HspAI	GCGC	3 cut(s)	5, 491, 586
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	197, 214, 819, 825
LmnI	GCTCC	3 cut(s)	10, 95, 262
Lsp1109I	GCAGC	3 cut(s)	7, 127, 595
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	4 cut(s)	270, 379, 565, 839
MalI	GATC	4 cut(s)	199, 216, 821, 827
MbiI	CCGCTC	2 cut(s)	90, 753
MboI	GATC	4 cut(s)	197, 214, 819, 825
MboII	GAAGA	6 cut(s)	115, 172, 192, 302, 597, 608
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	2 cut(s)	259, 809
MluCI	AATT	6 cut(s)	209, 445, 601, 682, 706, 773
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	28, 341, 847
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	9 cut(s)	140, 155, 249, 255, 353, 379, 526, 531, 736
MroXI	GAANNNNTTC	1 cut(s)	683
MseI	TTAA	3 cut(s)	65, 110, 868
MslI	CAYNNNNRTG	1 cut(s)	543
MspA1I	CMGCKG	2 cut(s)	20, 467
MspI	CCGG	4 cut(s)	8, 326, 340, 377
MspR9I	CCNGG	2 cut(s)	377, 845
MvaI	CCWGG	1 cut(s)	845
MvnI	CGCG	1 cut(s)	790
MwoI	GCNNNNNNNGC	1 cut(s)	787
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	4 cut(s)	197, 214, 819, 825
NlaIII	CATG	6 cut(s)	339, 481, 505, 535, 542, 832
NlaIV	GGNNCC	2 cut(s)	6, 258
NmuCI	GTSAC	2 cut(s)	565, 839
NspI	RCATGY	1 cut(s)	535
PagI	TCATGA	1 cut(s)	538
PciI	ACATGT	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	683
PfeI	GAWTC	3 cut(s)	512, 767, 799
PflFI	GACNNNGTC	1 cut(s)	37
PkrI	GCNGC	4 cut(s)	22, 142, 585, 783
PleI	GAGTC	3 cut(s)	28, 340, 846
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	28, 340, 846
PscI	ACATGT	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	843
PspFI	CCCAGC	1 cut(s)	758
PspGI	CCWGG	1 cut(s)	843
PspN4I	GGNNCC	2 cut(s)	6, 258
PstI	CTGCAG	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	197
PsyI	GACNNNGTC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	704
RsaNI	GTAC	1 cut(s)	703
RseI	CAYNNNNRTG	1 cut(s)	543
SaqAI	TTAA	3 cut(s)	65, 110, 868
SatI	GCNGC	4 cut(s)	21, 141, 584, 782
Sau3AI	GATC	4 cut(s)	197, 214, 819, 825
SchI	GAGTC	3 cut(s)	28, 341, 847
ScrFI	CCNGG	2 cut(s)	377, 845
SduI	GDGCHC	2 cut(s)	259, 809
SetI	ASST	8 cut(s)	29, 65, 241, 308, 523, 716, 747, 817
SfcI	CTRYAG	1 cut(s)	155
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	2 cut(s)	246, 522
SmoI	CTYRAG	2 cut(s)	246, 522
Sse9I	AATT	6 cut(s)	209, 445, 601, 682, 706, 773
SsiI	CCGC	7 cut(s)	18, 88, 455, 465, 753, 781, 788
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	375, 843
TaaI	ACNGT	3 cut(s)	177, 223, 290
TaqI	TCGA	3 cut(s)	625, 822, 836
TasI	AATT	6 cut(s)	209, 445, 601, 682, 706, 773
TauI	GCSGC	1 cut(s)	784
TfiI	GAWTC	3 cut(s)	512, 767, 799
Tru1I	TTAA	3 cut(s)	65, 110, 868
Tru9I	TTAA	3 cut(s)	65, 110, 868
TscAI	CASTG	2 cut(s)	596, 801
TseFI	GTSAC	2 cut(s)	565, 839
TseI	GCWGC	3 cut(s)	20, 140, 583
Tsp45I	GTSAC	2 cut(s)	565, 839
TspDTI	ATGAA	4 cut(s)	115, 369, 527, 597
TspRI	CASTG	2 cut(s)	596, 801
Tth111I	GACNNNGTC	1 cut(s)	37
XapI	RAATTY	2 cut(s)	445, 601
XbaI	TCTAGA	1 cut(s)	278
XceI	RCATGY	1 cut(s)	535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	683
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.