Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000814

Physical Location & Seq

Genomic Coordinates Reverse (-)

57064496 .. 57064819

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0436300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGAGTATCCGGCGACGGTGGTGTTCGTGGGAGGAGCGGATCCGCTGCAGGACTGGCAGATGAGGTACTATAATTGGTTGAGGAAATCAGGGATTGAGGCCAAGCTGATCGAGTATCCCAATATGTTTCATGGCTTCTATGCCTTGACGACGGGTCTGGGTTGGACGGAGGAGAGCAGCACGAAGCAGTCCAAGGCCTCGCTTGTCTGGTTCTTGGAATTTGCTGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

77

Amino Acids

8.93

Weight (kDa)

4.87

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_3	PF07859	3 - 47	1.5e-09	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47740 AT3G47750 AT3G47760 AT3G47760 AT3G47760 AT3G47770 AT3G47770 AT3G47770 AT3G47780 AT3G47790 AT3G47790 AT3G47790 AT5G61700 AT5G61700 AT5G61700 AT5G61700 AT5G61740 AT5G61740 AT5G61740
fragaria_vesca	FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g17020
malus_domestica	MD00G1160300.v1.1 MD06G1189700.v1.1 MD14G1196600.v1.1
prunus_persica	Prupe.5G188500_v2.0.a1 Prupe.5G188500_v2.0.a1 Prupe.5G188700_v2.0.a1 Prupe.5G229600_v2.0.a1 Prupe.5G229600_v2.0.a1
pyrus_communis	pycom06g16850 pycom14g16330
rosa_chinensis	RchiOBHm_Chr7g0178831 RchiOBHm_Chr7g0180791 RchiOBHm_Chr7g0180811
rosa_laevigata	RLG00000005228 RLG00000005229 RLG00000005411
rosa_multiflora	Rmu_sc0007457.1_g000007 Rmu_sc0007457.1_g000009 Rmu_sc0025325.1_g000002 Rmu_sc0025325.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272510 Rroxscaffold_3G00272520 Rroxscaffold_3G00274540
rosa_rugosa	Rorug01G0115100 Rorug06G0420100 Rorug06G0420100 Rorug06G0436000 Rorug06G0436100 Rorug06G0436200 Rorug06G0436300
rosa_samantha	Rh1BG107000 Rh7AG019400 Rh7AG037800 Rh7AG038000 Rh7BG018900 Rh7BG037600 Rh7BG037800 Rh7CG019500 Rh7CG039200 Rh7CG039300 Rh7DG019300
rosa_wichuraiana	Rw7G001580 Rw7G003120 Rw7G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	38
AciI	CCGC	2 cut(s)	38, 44
AclWI	GGATC	2 cut(s)	35, 48
AcsI	RAATTY	1 cut(s)	218
AfaI	GTAC	1 cut(s)	68
AhdI	GACNNNNNGTC	1 cut(s)	153
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
AlwI	GGATC	2 cut(s)	35, 48
AoxI	GGCC	2 cut(s)	99, 195
ApeKI	GCWGC	2 cut(s)	46, 177
ApoI	RAATTY	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	33, 189
BciVI	GTATCC	2 cut(s)	18, 126
BfmI	CTRYAG	1 cut(s)	47
BfuI	GTATCC	2 cut(s)	18, 126
BisI	GCNGC	2 cut(s)	47, 178
BlsI	GCNGC	2 cut(s)	48, 179
BmeRI	GACNNNNNGTC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	2 cut(s)	48, 185
BseXI	GCAGC	2 cut(s)	33, 189
BshFI	GGCC	2 cut(s)	101, 197
BsiSI	CCGG	1 cut(s)	11
BsnI	GGCC	2 cut(s)	101, 197
Bsp143I	GATC	2 cut(s)	40, 108
BspACI	CCGC	2 cut(s)	38, 44
BspANI	GGCC	2 cut(s)	101, 197
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	51
BspPI	GGATC	2 cut(s)	35, 48
BsrBI	CCGCTC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	40, 108
BssT1I	CCWWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	19
BstKTI	GATC	2 cut(s)	43, 111
BstMBI	GATC	2 cut(s)	40, 108
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	33, 189
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuI	GTATCC	2 cut(s)	18, 126
BsuRI	GGCC	2 cut(s)	101, 197
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	4 cut(s)	101, 106, 135, 197
CviKI_1	RGCY	4 cut(s)	101, 106, 135, 197
CviQI	GTAC	1 cut(s)	67
DpnI	GATC	2 cut(s)	42, 110
DpnII	GATC	2 cut(s)	40, 108
DriI	GACNNNNNGTC	1 cut(s)	153
Eam1105I	GACNNNNNGTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	134
FaiI	YATR	6 cut(s)	72, 125, 132, 141, 230, 232
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	47, 178
Fsp4HI	GCNGC	2 cut(s)	47, 178
GluI	GCNGC	2 cut(s)	47, 178
HaeIII	GGCC	2 cut(s)	101, 197
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	1 cut(s)	134
HpaII	CCGG	1 cut(s)	11
Hpy99I	CGWCG	2 cut(s)	19, 154
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	40, 108
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	6 cut(s)	24, 35, 40, 75, 143, 193
Lsp1109I	GCAGC	2 cut(s)	33, 189
MalI	GATC	2 cut(s)	42, 110
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	2 cut(s)	40, 108
MflI	RGATCY	1 cut(s)	40
MluCI	AATT	2 cut(s)	73, 218
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	6 cut(s)	26, 57, 75, 91, 163, 208
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	2 cut(s)	40, 108
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	48, 179
PspN4I	GGNNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SatI	GCNGC	2 cut(s)	47, 178
Sau3AI	GATC	2 cut(s)	40, 108
SetI	ASST	2 cut(s)	68, 108
SfcI	CTRYAG	1 cut(s)	47
Sse9I	AATT	2 cut(s)	73, 218
SseBI	AGGCCT	1 cut(s)	197
SsiI	CCGC	2 cut(s)	38, 44
StuI	AGGCCT	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	73, 218
TseI	GCWGC	2 cut(s)	46, 177
TspDTI	ATGAA	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	182
XapI	RAATTY	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.