Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000814

Physical Location & Seq

Genomic Coordinates Reverse (-)

64606394 .. 64610736

Gene Structure 4343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAAGAAGCAAAATATACAAGTCATGTTGTGATATGTGACAACATAAAGAAGGTGTATCCAGGAAGAGATGGAAACCCTGAGAAATTTGCAGTGAGAGGGTTGTCTCTTGCTTTGCCTCAAGGAGAATGCTTTGGTATGCTTGGTCCTAGTGGTGCAGGGAAGACTTCTTTTATTGAAATGATGATTGGTCTCGCAAAGCCAACTACTGGCACAGCCTATGTTCAGGGCTTGGACCTTGCAGTGGAAGATTCTTTGAAGAGTCTGAATCTATTTAATGGTGGGGTTGCTGACAAACGAGCAGGGCAATATAGTGGAGGTATGAAGAGAAGGCTTAGCGTCGCCATTTCACTCATAGGGAATCCCATAGCTGTTTACATGGATGAACCCAGTACCGGACTTGATCCAGCTTCAAGAAACACTCTATGGAATGTTGTAAAGCTCGCTAAGCAAGGCCGTGTCATCATACTAACCACACATTCCATGGAAGAGGCAGAGTTCTTGTGTGATCGAATAGGAATTTTTGTAGACGGAAGACTGCAGTGCATAGGAAATCCAAAAGAGTTGAAGGGCAGATATGGAGGATCATATGTGTTCACAATCACAACAGATTCATGTCATGACCAAGAAGTGGAGAGTCTGGTACAGAGACTCGCCCCGAACGCCAACAGGGTATACCACCTCGCCGGAACACAAAAATTCGAGTTTCCCAAAAGTGAGGTCAGAATTGCAGATGTTTTCCAGACAGTGGAGCATGTAAAGAAGATGTTCACAGTCTATGCTTGGGGCCTGGCTGACACTACTCTGGAGGATGTCTTTATTAAGGTTGCAAGTGCACCCAAAAAGCTTGAATCCAACGTCTTAAGTAGAGGCAATTTGATCGATAATCGAAGTCATGGTCTTGTACATAAAGTGGGAAGCTTTGTCATGGGTGAAATGTACATAATGGCCTGGGTTAGTGGGAAGTTACCCGCAGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

327

Amino Acids

35.79

Weight (kDa)

7.64

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	33 - 82	4.1e-09	ABC transporter
AAA_21	PF13304	101 - 163	3e-07	AAA domain, putative AbiEii toxin, Type IV TA system
ABCA12_C	PF24526	197 - 247	1.3e-27	ABCA12-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47740 AT3G47750 AT3G47760 AT3G47760 AT3G47760 AT3G47770 AT3G47770 AT3G47770 AT3G47780 AT3G47790 AT3G47790 AT3G47790 AT5G61700 AT5G61700 AT5G61700 AT5G61700 AT5G61740 AT5G61740 AT5G61740
fragaria_vesca	FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g17020
malus_domestica	MD00G1160300.v1.1 MD06G1189700.v1.1 MD14G1196600.v1.1
prunus_persica	Prupe.5G188500_v2.0.a1 Prupe.5G188500_v2.0.a1 Prupe.5G188700_v2.0.a1 Prupe.5G229600_v2.0.a1 Prupe.5G229600_v2.0.a1
pyrus_communis	pycom06g16850 pycom14g16330
rosa_chinensis	RchiOBHm_Chr7g0178831 RchiOBHm_Chr7g0180791 RchiOBHm_Chr7g0180811
rosa_laevigata	RLG00000005228 RLG00000005229 RLG00000005411
rosa_multiflora	Rmu_sc0007457.1_g000007 Rmu_sc0007457.1_g000009 Rmu_sc0025325.1_g000002 Rmu_sc0025325.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272510 Rroxscaffold_3G00272520 Rroxscaffold_3G00274540
rosa_rugosa	Rorug01G0115100 Rorug06G0420100 Rorug06G0420100 Rorug06G0436000 Rorug06G0436100 Rorug06G0436200 Rorug06G0436300
rosa_samantha	Rh1BG107000 Rh7AG019400 Rh7AG037800 Rh7AG038000 Rh7BG018900 Rh7BG037600 Rh7BG037800 Rh7CG019500 Rh7CG039200 Rh7CG039300 Rh7DG019300
rosa_wichuraiana	Rw7G001580 Rw7G003120 Rw7G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	209, 631, 748
AccI	GTMKAC	2 cut(s)	528, 675
AciI	CCGC	1 cut(s)	972
AclWI	GGATC	2 cut(s)	398, 592
AcsI	RAATTY	3 cut(s)	86, 519, 698
AfaI	GTAC	4 cut(s)	394, 645, 906, 941
AfiI	CCNNNNNNNGG	5 cut(s)	209, 244, 395, 631, 748
AflII	CTTAAG	1 cut(s)	862
AgsI	TTSAA	5 cut(s)	179, 259, 414, 568, 851
AjnI	CCWGG	3 cut(s)	61, 789, 950
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	5 cut(s)	371, 410, 442, 847, 921
AluI	AGCT	5 cut(s)	371, 410, 442, 847, 921
Alw21I	GWGCWC	1 cut(s)	838
Alw26I	GTCTC	3 cut(s)	111, 197, 643
Alw44I	GTGCAC	1 cut(s)	834
AlwI	GGATC	2 cut(s)	398, 592
AoxI	GGCC	3 cut(s)	454, 787, 948
ApaLI	GTGCAC	1 cut(s)	834
ApoI	RAATTY	3 cut(s)	86, 519, 698
ArsI	GACNNNNNNTTYG	4 cut(s)	705, 737, 883, 915
Asp700I	GAANNNNTTC	1 cut(s)	767
AspS9I	GGNCC	3 cut(s)	146, 235, 787
AsuHPI	GGTGA	1 cut(s)	944
AvaII	GGWCC	2 cut(s)	146, 235
BaeGI	GKGCMC	1 cut(s)	838
BbsI	GAAGAC	2 cut(s)	170, 541
Bbv12I	GWGCWC	1 cut(s)	838
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	441
BcgI	CGANNNNNNTGC	2 cut(s)	862, 896
BciT130I	CCWGG	3 cut(s)	63, 791, 952
BciVI	GTATCC	1 cut(s)	69
BcoDI	GTCTC	3 cut(s)	111, 197, 643
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	539
BfrI	CTTAAG	1 cut(s)	862
BfuI	GTATCC	1 cut(s)	69
BlpI	GCTNAGC	2 cut(s)	335, 447
Bme1390I	CCNGG	3 cut(s)	63, 791, 952
Bme18I	GGWCC	2 cut(s)	146, 235
BmgT120I	GGNCC	3 cut(s)	146, 235, 787
BmiI	GGNNCC	1 cut(s)	788
BmrFI	CCNGG	3 cut(s)	63, 791, 952
BmrI	ACTGGG	1 cut(s)	384
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	2 cut(s)	170, 541
BpmI	CTGGAG	1 cut(s)	827
Bpu1102I	GCTNAGC	2 cut(s)	335, 447
BpuEI	CTTGAG	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	882
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	483, 951
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	5 cut(s)	209, 244, 395, 631, 748
Bse1I	ACTGG	2 cut(s)	214, 390
BseBI	CCWGG	3 cut(s)	63, 791, 952
BseCI	ATCGAT	1 cut(s)	882
BseDI	CCNNGG	2 cut(s)	483, 951
BseGI	GGATG	2 cut(s)	388, 817
BseLI	CCNNNNNNNGG	5 cut(s)	209, 244, 395, 631, 748
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	214, 390
BseSI	GKGCMC	1 cut(s)	838
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	3 cut(s)	456, 789, 950
BshVI	ATCGAT	1 cut(s)	882
BsiHKAI	GWGCWC	1 cut(s)	838
BsiSI	CCGG	2 cut(s)	396, 687
BslI	CCNNNNNNNGG	5 cut(s)	209, 244, 395, 631, 748
BsmAI	GTCTC	3 cut(s)	111, 197, 643
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	3 cut(s)	456, 789, 950
Bso31I	GGTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	838
Bsp1407I	TGTACA	2 cut(s)	904, 939
Bsp143I	GATC	4 cut(s)	403, 508, 584, 879
Bsp1720I	GCTNAGC	2 cut(s)	335, 447
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	1 cut(s)	972
BspANI	GGCC	3 cut(s)	456, 789, 950
BspCNI	CTCAG	1 cut(s)	73
BspDI	ATCGAT	1 cut(s)	882
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	1 cut(s)	788
BspMAI	CTGCAG	1 cut(s)	543
BspPI	GGATC	2 cut(s)	398, 592
BspTI	CTTAAG	1 cut(s)	862
BspTNI	GGTCTC	1 cut(s)	197
BsrGI	TGTACA	2 cut(s)	904, 939
BsrI	ACTGG	2 cut(s)	214, 390
BssECI	CCNNGG	2 cut(s)	483, 951
BssMI	GATC	4 cut(s)	403, 508, 584, 879
BssNAI	GTATAC	1 cut(s)	676
BssT1I	CCWWGG	1 cut(s)	483
Bst1107I	GTATAC	1 cut(s)	676
Bst2UI	CCWGG	3 cut(s)	63, 791, 952
Bst4CI	ACNGT	2 cut(s)	748, 775
Bst6I	CTCTTC	4 cut(s)	61, 254, 320, 483
BstAFI	CTTAAG	1 cut(s)	862
BstAUI	TGTACA	2 cut(s)	904, 939
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	3 cut(s)	81, 335, 447
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	388, 817
BstKTI	GATC	4 cut(s)	406, 511, 587, 882
BstMAI	GTCTC	3 cut(s)	111, 197, 643
BstMBI	GATC	4 cut(s)	403, 508, 584, 879
BstMWI	GCNNNNNNNGC	2 cut(s)	448, 662
BstNI	CCWGG	3 cut(s)	63, 791, 952
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	3 cut(s)	61, 789, 950
BstSFI	CTRYAG	1 cut(s)	539
BstSLI	GKGCMC	1 cut(s)	838
BstV2I	GAAGAC	2 cut(s)	170, 541
BstZ17I	GTATAC	1 cut(s)	676
Bsu15I	ATCGAT	1 cut(s)	882
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	456, 789, 950
BsuTUI	ATCGAT	1 cut(s)	882
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	388, 817
BtsI	GCAGTG	3 cut(s)	99, 249, 548
BtsIMutI	CAGTG	4 cut(s)	99, 249, 548, 753
Cac8I	GCNNGC	1 cut(s)	444
CciI	TCATGA	1 cut(s)	619
Cfr13I	GGNCC	3 cut(s)	146, 235, 787
ClaI	ATCGAT	1 cut(s)	882
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	4 cut(s)	393, 644, 905, 940
CviAII	CATG	8 cut(s)	26, 379, 484, 615, 620, 755, 896, 928
CviQI	GTAC	4 cut(s)	393, 644, 905, 940
DdeI	CTNAG	3 cut(s)	81, 335, 447
DpnI	GATC	4 cut(s)	405, 510, 586, 881
DpnII	GATC	4 cut(s)	403, 508, 584, 879
Eam1104I	CTCTTC	4 cut(s)	61, 254, 320, 483
EarI	CTCTTC	4 cut(s)	61, 254, 320, 483
Eco130I	CCWWGG	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	146, 235
EcoO109I	RGGNCCY	1 cut(s)	787
EcoRII	CCWGG	3 cut(s)	61, 789, 950
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	8 cut(s)	29, 382, 487, 618, 623, 758, 899, 931
FatI	CATG	8 cut(s)	25, 378, 483, 614, 619, 754, 895, 927
FauI	CCCGC	1 cut(s)	979
FauNDI	CATATG	1 cut(s)	589
FblI	GTMKAC	2 cut(s)	528, 675
FokI	GGATG	2 cut(s)	395, 824
FspBI	CTAG	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	827
HaeIII	GGCC	3 cut(s)	456, 789, 950
HapII	CCGG	2 cut(s)	396, 687
HgaI	GACGC	1 cut(s)	328
Hin1II	CATG	8 cut(s)	29, 382, 487, 618, 623, 758, 899, 931
HindIII	AAGCTT	2 cut(s)	845, 919
HinfI	GANTC	8 cut(s)	251, 262, 268, 361, 611, 637, 651, 851
HpaII	CCGG	2 cut(s)	396, 687
HphI	GGTGA	1 cut(s)	944
Hpy166II	GTNNAC	6 cut(s)	376, 529, 597, 676, 771, 836
Hpy188I	TCNGA	2 cut(s)	267, 725
Hpy188III	TCNNGA	4 cut(s)	414, 620, 742, 806
Hpy8I	GTNNAC	6 cut(s)	376, 529, 597, 676, 771, 836
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	3 cut(s)	46, 324, 562
HpyCH4III	ACNGT	2 cut(s)	748, 775
HpyCH4IV	ACGT	1 cut(s)	858
HpyCH4V	TGCA	8 cut(s)	92, 158, 242, 541, 546, 731, 830, 836
HpyF10VI	GCNNNNNNNGC	2 cut(s)	448, 662
HpyF3I	CTNAG	3 cut(s)	81, 335, 447
HpySE526I	ACGT	1 cut(s)	858
Hsp92II	CATG	8 cut(s)	29, 382, 487, 618, 623, 758, 899, 931
Kzo9I	GATC	4 cut(s)	403, 508, 584, 879
LmnI	GCTCC	1 cut(s)	751
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	858
MaeIII	GTNAC	2 cut(s)	38, 966
MalI	GATC	4 cut(s)	405, 510, 586, 881
MboI	GATC	4 cut(s)	403, 508, 584, 879
MboII	GAAGA	9 cut(s)	17, 78, 175, 260, 271, 337, 500, 546, 775
MhlI	GDGCHC	1 cut(s)	838
MluCI	AATT	5 cut(s)	86, 519, 698, 726, 874
MlyI	GAGTC	3 cut(s)	271, 645, 646
MmeI	TCCRAC	1 cut(s)	879
MroXI	GAANNNNTTC	1 cut(s)	767
MseI	TTAA	3 cut(s)	276, 822, 863
MspCI	CTTAAG	1 cut(s)	862
MspI	CCGG	2 cut(s)	396, 687
MspR9I	CCNGG	3 cut(s)	63, 791, 952
Mva1269I	GAATGC	1 cut(s)	134
MvaI	CCWGG	3 cut(s)	63, 791, 952
MwoI	GCNNNNNNNGC	2 cut(s)	448, 662
NcoI	CCATGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	4 cut(s)	403, 508, 584, 879
NlaIII	CATG	8 cut(s)	29, 382, 487, 618, 623, 758, 899, 931
NlaIV	GGNNCC	1 cut(s)	788
NmuCI	GTSAC	1 cut(s)	38
NspI	RCATGY	1 cut(s)	758
PagI	TCATGA	1 cut(s)	619
PctI	GAATGC	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	767
PfeI	GAWTC	5 cut(s)	251, 268, 361, 611, 851
PflMI	CCANNNNNTGG	3 cut(s)	209, 631, 748
PfoI	TCCNGGA	1 cut(s)	61
PleI	GAGTC	3 cut(s)	270, 645, 645
PpsI	GAGTC	3 cut(s)	270, 645, 645
Psp6I	CCWGG	3 cut(s)	61, 789, 950
PspGI	CCWGG	3 cut(s)	61, 789, 950
PspN4I	GGNNCC	1 cut(s)	788
PspPI	GGNCC	3 cut(s)	146, 235, 787
PstI	CTGCAG	1 cut(s)	543
RsaI	GTAC	4 cut(s)	394, 645, 906, 941
RsaNI	GTAC	4 cut(s)	393, 644, 905, 940
SaqAI	TTAA	3 cut(s)	276, 822, 863
Sau3AI	GATC	4 cut(s)	403, 508, 584, 879
Sau96I	GGNCC	3 cut(s)	146, 235, 787
SchI	GAGTC	3 cut(s)	271, 645, 646
ScrFI	CCNGG	3 cut(s)	63, 791, 952
SduI	GDGCHC	1 cut(s)	838
SfcI	CTRYAG	1 cut(s)	539
SinI	GGWCC	2 cut(s)	146, 235
SmlI	CTYRAG	2 cut(s)	120, 862
SmoI	CTYRAG	2 cut(s)	120, 862
Sse9I	AATT	5 cut(s)	86, 519, 698, 726, 874
SsiI	CCGC	1 cut(s)	972
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	3 cut(s)	61, 789, 950
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	748, 775
TaiI	ACGT	1 cut(s)	861
TaqI	TCGA	4 cut(s)	511, 702, 882, 889
TasI	AATT	5 cut(s)	86, 519, 698, 726, 874
TatI	WGTACW	2 cut(s)	904, 939
TfiI	GAWTC	5 cut(s)	251, 268, 361, 611, 851
Tru1I	TTAA	3 cut(s)	276, 822, 863
Tru9I	TTAA	3 cut(s)	276, 822, 863
TscAI	CASTG	4 cut(s)	99, 249, 548, 753
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	3 cut(s)	338, 399, 603
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	4 cut(s)	99, 249, 548, 753
Van91I	CCANNNNNTGG	3 cut(s)	209, 631, 748
Vha464I	CTTAAG	1 cut(s)	862
VneI	GTGCAC	1 cut(s)	834
VpaK11BI	GGWCC	2 cut(s)	146, 235
XapI	RAATTY	3 cut(s)	86, 519, 698
XceI	RCATGY	1 cut(s)	758
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XmiI	GTMKAC	2 cut(s)	528, 675
XmnI	GAANNNNTTC	1 cut(s)	767
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.