Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000814

Physical Location & Seq

Genomic Coordinates Forward (+)

18599322 .. 18604300

Gene Structure 4979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG107000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2760 bp

ATGGCGCCGGAGCGTTCCGCTGCGTGCTTCTGGACTCAGTCCAATGCCTTGCTCAGAAAGAGCTTAACATATCAGAAAAGAAACATCCGCTCCAATATCATGCTGGTTTTAATACCCTTTTTCTTCATCCTCATTTTGGCTGCCCTCCAAAGTCTGCAGAAGAATGTGAACAAACAATTATCAAAACCCGATTGTGGATCTTCAGACCAATTTGATCTAACTTTATCTTGTCCCATACCTCAGCCTCAAGAATGGGCTCCATTGTTGCAGTTACCATCTCGAGATTACCCTGCAGTAAGAAGTAACTCTCTTCCATCTGACTTGCCGGATGAGTCATGCCGGAGTAGGCATGATGAAAGAGGCTACTCCTCCTGCCCGGTAACACTACTTCTTACTGGGAATAATCAGTCTTTAGGAGAAACTCTGGCTGGAAATATGTTGTTGAATTCTCCCCCGCCGAAATCCGCTAGTGATGGCATGGAATATATAGCGCATAATGTCATGGGTTCGGATTCCTCACCTCAAGAGAACATGTTTCATGACTATGACTGGTCTAAGGATGTTGTGACCATCTATAATGTGCAGCGGCACTGCTCACCAAATTCTTCATTCTATCTTCCAGTTCGAGAAGCAAGTTTGCAACCAAAAATATTTGTTGAATGTGTTGAAGGTTTGCCTTTGTGGCGCAATACTTCTACCGAAGTAAACAATGAGCTATATAGAGGTTACAGAAATGGGAATTCAGAGGGGAAGATTAATGAAGTACTTGGAGCCTATGATTTCTCCAACTCAGATAAGAATAATTTCAATGTGAGCGTATGGTACAATTCAAGCTTGAAATCTGGAGATGATGATGTTGGCGAGGTGCTGAGCGGGGCTGGGAGTGATTCTAAATTGTTGCGGCTTCCACGTGCAGTGAATCTGGCCTCCAGTGCCTACCTACGGTTCTTGAAAGGTTTTGGAACAAATATGCTGCTTGATTTTGTCAAAGAAATGCCCAAGCAGGAAACCCCATTCCAGATGCCAGATATTGCCTCTATGATTGGTCCACTCTTCTTTACATGGGTTATCTTACTGCTCTTCCCTGTTGTGATGAAGTCGCTGGTGTACGAAAAACAACAAAAACTCAGAATCATGATGAAAATGCATGGACTTGGTGATGGACCCTATTGGATGATTTCCTATGCCTATTTTCTTACAGTATCTGTAGTGTACATGCTATGTCTTGTTATATCTGGCTCACTTATCGGGTTAAAAATTTTCAGACTACATGACTACACCATCCAGTTTGTTTTCTACTTCTTATATATGAATTTGCAAATAGCGATGGCTTTTCTAGCAGCTGCATTGTTCTCCAACGTTAAGGCTTGTTCAGTTATAGGTTACATATTGGTCTTTGCAACCGGGCTTTTTGGTTCAGAACTTTTTCAAGCCTTTATAGAAGATCCATCATTCCCTAGATACTGGATCATTGTTCTTGAGTTGTATCCTGGCTTGTCTCTGTATCGTGGGTTATATGAGTTTGCAGAATTCACCCCTGAAGCAAGTACTGTGGGGACTGTTGGGATGCGATGGGGAAATTTGAGACACAGCAATAGTGGGATGAGAGAAGTCTTTATTGTCATGTTTGTGGAGTGCTGCTTTGGAAAGAATAAAGAACATTCCTCATCTCTTGGGAGTGGGACGCCTAGTGCACAATGGCAGGGATCTACAGTTTCTATTCAGATGGACAAACCTGATGTTACTCAAGAGATGGAGAAGGTTGAGAGTTTGCTATTGGATCAAGATAGTACAAGTCACGCGATCATCTGCCATGACCTGAAAAAGGTGTATCCAGGAAGAGATGGAAACCCTGAGAAGTTTGCAGTGAAAGGGTTATCTCTTGCTTTGCCACGAGGGGAATGCTTTGGCATGCTTGGTCCCAATGGTGCAGGGAAGACCTCATTTATTAGCATGATGATTGGTCTGACAAAACCAAGCTCTGGTGCGGCATATGTTCATGGTATGGACATTTGGACTCAGATGGATGAAATATATACCAGCATGGGTGTTTGTCCACAGCACGACTTACTATGGGAGAGCCTGACTGGAAGGGAGCATTTGCTGTTTTATGGAAGACTTAAGAATCTCAAAGGTTCTGCCTTAATAGAAGCTGTGGAAGAGTCTTTGAAGAGTGTGAATCTGTTCTATGGTGGAGTTGCTGACAAACAGGCTGGGAAGTATAGTGGAGGTATGAAGAGAAGGCTTAGCGTTGCAATTTCACTCATAGGGGATCCGAAGGTTGTTTACATGGATGAGCCTAGTACTGGACTAGATCCAGCTTCAAGAAACCATCTATGGAATGTTGTAAAGGCGGCGAAACAGGACCGAGCAATCCTCTTAACCACACATTCCATGGAAGAGGCAGAGGTTCTCTGTGATCGACTAGGAATTTTTGTAGATGGCAGATTGCAGTGTATTGGAAATCCGAAAGAGCTGAAGGCTAGATATGGAGGATCGTATATCTTCACAATGACCACAAGTGGGGATCATGAGGAAGAAGTGGAGAAGATGGTTCGGACGATCTCACCCAACGCCAACAAGGTATACCGACTCTCAGGGACACAGAAGTTTGAGCTGCCCAAAAATGAGGTCACTATCGCCCATGTCTTCCAAGCTGTGGAGGCTGCAAAGCGGCAATTCACAGTGTTCGCTTGGGGTCTCACTGACACTACTTTGGAGGATGTCTTCATCAAGGTTGCTACAACCGCTTCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

919

Amino Acids

102.55

Weight (kDa)

6.23

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane_3	PF12698	265 - 506	6.2e-10	ABC-2 family transporter protein
ABC_tran	PF00005	624 - 768	5.1e-23	ABC transporter
AAA_21	PF13304	737 - 800	9.6e-08	AAA domain, putative AbiEii toxin, Type IV TA system
ABCA12_C	PF24526	834 - 884	2.3e-27	ABCA12-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47740 AT3G47750 AT3G47760 AT3G47760 AT3G47760 AT3G47770 AT3G47770 AT3G47770 AT3G47780 AT3G47790 AT3G47790 AT3G47790 AT5G61700 AT5G61700 AT5G61700 AT5G61700 AT5G61740 AT5G61740 AT5G61740
fragaria_vesca	FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g17020
malus_domestica	MD00G1160300.v1.1 MD06G1189700.v1.1 MD14G1196600.v1.1
prunus_persica	Prupe.5G188500_v2.0.a1 Prupe.5G188500_v2.0.a1 Prupe.5G188700_v2.0.a1 Prupe.5G229600_v2.0.a1 Prupe.5G229600_v2.0.a1
pyrus_communis	pycom06g16850 pycom14g16330
rosa_chinensis	RchiOBHm_Chr7g0178831 RchiOBHm_Chr7g0180791 RchiOBHm_Chr7g0180811
rosa_laevigata	RLG00000005228 RLG00000005229 RLG00000005411
rosa_multiflora	Rmu_sc0007457.1_g000007 Rmu_sc0007457.1_g000009 Rmu_sc0025325.1_g000002 Rmu_sc0025325.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272510 Rroxscaffold_3G00272520 Rroxscaffold_3G00274540
rosa_rugosa	Rorug01G0115100 Rorug06G0420100 Rorug06G0420100 Rorug06G0436000 Rorug06G0436100 Rorug06G0436200 Rorug06G0436300
rosa_samantha	Rh1BG107000 Rh7AG019400 Rh7AG037800 Rh7AG038000 Rh7BG018900 Rh7BG037600 Rh7BG037800 Rh7CG019500 Rh7CG039200 Rh7CG039300 Rh7DG019300
rosa_wichuraiana	Rw7G001580 Rw7G003120 Rw7G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	2 cut(s)	1982, 2659
AccBSI	CCGCTC	2 cut(s)	90, 873
AccI	GTMKAC	1 cut(s)	2586
AccII	CGCG	1 cut(s)	1802
AclI	AACGTT	1 cut(s)	1359
AcsI	RAATTY	8 cut(s)	445, 601, 739, 1257, 1312, 1529, 1579, 2430
AcuI	CTGAAG	3 cut(s)	186, 1560, 2498
AcvI	CACGTG	1 cut(s)	911
AcyI	GRCGYC	2 cut(s)	5, 1685
AfaI	GTAC	7 cut(s)	765, 824, 1109, 1214, 1549, 1792, 2305
AfiI	CCNNNNNNNGG	8 cut(s)	136, 194, 942, 1825, 1982, 2306, 2523, 2659
AflII	CTTAAG	1 cut(s)	2120
AflIII	ACRYGT	1 cut(s)	531
AjnI	CCWGG	2 cut(s)	1489, 1834
Alw21I	GWGCWC	1 cut(s)	1696
Alw26I	GTCTC	3 cut(s)	1503, 1579, 2705
Alw44I	GTGCAC	1 cut(s)	1692
AlwNI	CAGNNNCTG	1 cut(s)	1205
Ama87I	CYCGRG	1 cut(s)	279
AoxI	GGCC	1 cut(s)	924
ApaLI	GTGCAC	1 cut(s)	1692
ApeKI	GCWGC	9 cut(s)	20, 140, 583, 973, 1340, 1343, 1638, 2617, 2666
ApoI	RAATTY	8 cut(s)	445, 601, 739, 1257, 1312, 1529, 1579, 2430
ArsI	GACNNNNNNTTYG	2 cut(s)	2616, 2648
AseI	ATTAAT	1 cut(s)	756
Asp700I	GAANNNNTTC	3 cut(s)	803, 1425, 2183
AspLEI	GCGC	3 cut(s)	7, 493, 687
AspS9I	GGNCC	4 cut(s)	1046, 1163, 1919, 2365
AsuC2I	CCSGG	2 cut(s)	377, 1405
AsuHPI	GGTGA	5 cut(s)	510, 588, 1169, 1525, 2559
AvaI	CYCGRG	1 cut(s)	279
AvaII	GGWCC	4 cut(s)	1046, 1163, 1919, 2365
BaeGI	GKGCMC	1 cut(s)	1696
BamHI	GGATCC	1 cut(s)	2272
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	259
BarI	GAAGNNNNNNTAC	4 cut(s)	372, 404, 2270, 2302
BauI	CACGAG	1 cut(s)	1893
BbrPI	CACGTG	1 cut(s)	911
BbsI	GAAGAC	4 cut(s)	1943, 2122, 2641, 2719
Bbv12I	GWGCWC	1 cut(s)	1696
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	9 cut(s)	7, 127, 595, 960, 1330, 1352, 1625, 2604, 2653
BcgI	CGANNNNNNTGC	2 cut(s)	1884, 1918
BciT130I	CCWGG	2 cut(s)	1491, 1836
BciVI	GTATCC	2 cut(s)	1497, 1842
BcnI	CCSGG	2 cut(s)	377, 1405
BcoDI	GTCTC	3 cut(s)	1503, 1579, 2705
BfaI	CTAG	8 cut(s)	468, 1337, 1458, 1689, 2301, 2312, 2426, 2484
BfmI	CTRYAG	4 cut(s)	155, 291, 1206, 1710
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	2120
BfuI	GTATCC	2 cut(s)	1497, 1842
BglI	GCCNNNNNGGC	1 cut(s)	682
BlpI	GCTNAGC	2 cut(s)	869, 2246
BmcAI	AGTACT	3 cut(s)	765, 1549, 2305
Bme1390I	CCNGG	4 cut(s)	377, 1405, 1491, 1836
Bme18I	GGWCC	4 cut(s)	1046, 1163, 1919, 2365
BmeT110I	CYCGRG	1 cut(s)	279
BmgT120I	GGNCC	4 cut(s)	1046, 1163, 1919, 2365
BmiI	GGNNCC	6 cut(s)	6, 258, 772, 1165, 1921, 2274
BmrFI	CCNGG	4 cut(s)	377, 1405, 1491, 1836
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	1011, 1557
BmuI	ACTGGG	1 cut(s)	405
BpiI	GAAGAC	4 cut(s)	1943, 2122, 2641, 2719
BplI	GAGNNNNNCTC	2 cut(s)	2361, 2393
BpmI	CTGGAG	2 cut(s)	864, 913
Bpu10I	CCTNAGC	1 cut(s)	240
Bpu1102I	GCTNAGC	2 cut(s)	869, 2246
BpuEI	CTTGAG	4 cut(s)	231, 507, 1499, 1731
BpuMI	CCSGG	2 cut(s)	377, 1405
BsaAI	YACGTR	1 cut(s)	911
BsaHI	GRCGYC	2 cut(s)	5, 1685
BsaI	GGTCTC	1 cut(s)	2705
BsaJI	CCNNGG	1 cut(s)	2394
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	8 cut(s)	136, 194, 942, 1825, 1982, 2306, 2523, 2659
Bse1I	ACTGG	8 cut(s)	400, 554, 620, 930, 1285, 1469, 2092, 2311
BseBI	CCWGG	2 cut(s)	1491, 1836
BseDI	CCNNGG	1 cut(s)	2394
BseLI	CCNNNNNNNGG	8 cut(s)	136, 194, 942, 1825, 1982, 2306, 2523, 2659
BseMII	CTCAG	9 cut(s)	50, 67, 254, 804, 860, 1141, 1845, 2033, 2610
BseNI	ACTGG	8 cut(s)	400, 554, 620, 930, 1285, 1469, 2092, 2311
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	1696
BseXI	GCAGC	9 cut(s)	7, 127, 595, 960, 1330, 1352, 1625, 2604, 2653
BseYI	CCCAGC	2 cut(s)	878, 2213
BsgI	GTGCAG	3 cut(s)	602, 933, 1950
Bsh1236I	CGCG	1 cut(s)	1802
BshFI	GGCC	1 cut(s)	926
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	1696
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	5 cut(s)	8, 326, 340, 377, 1404
BslFI	GGGAC	5 cut(s)	216, 1570, 1696, 1905, 2614
BslI	CCNNNNNNNGG	8 cut(s)	136, 194, 942, 1825, 1982, 2306, 2523, 2659
BsmAI	GTCTC	3 cut(s)	1503, 1579, 2705
BsmFI	GGGAC	5 cut(s)	216, 1570, 1696, 1905, 2614
BsmI	GAATGC	1 cut(s)	1907
BsnI	GGCC	1 cut(s)	926
Bso31I	GGTCTC	1 cut(s)	2705
BsoBI	CYCGRG	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	259, 1696
Bsp1407I	TGTACA	1 cut(s)	1212
Bsp1720I	GCTNAGC	2 cut(s)	869, 2246
Bsp19I	CCATGG	1 cut(s)	2394
BspANI	GGCC	1 cut(s)	926
BspCNI	CTCAG	9 cut(s)	49, 66, 253, 803, 861, 1140, 1846, 2032, 2609
BspFNI	CGCG	1 cut(s)	1802
BspHI	TCATGA	3 cut(s)	538, 1134, 2530
BspLI	GGNNCC	6 cut(s)	6, 258, 772, 1165, 1921, 2274
BspMAI	CTGCAG	2 cut(s)	159, 295
BspQI	GCTCTTC	1 cut(s)	1085
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	2120
BspTNI	GGTCTC	1 cut(s)	2705
BsrBI	CCGCTC	2 cut(s)	90, 873
BsrGI	TGTACA	1 cut(s)	1212
BsrI	ACTGG	8 cut(s)	400, 554, 620, 930, 1285, 1469, 2092, 2311
BssECI	CCNNGG	1 cut(s)	2394
BssNAI	GTATAC	1 cut(s)	2587
BssNI	GRCGYC	2 cut(s)	5, 1685
BssSI	CACGAG	1 cut(s)	1893
BssT1I	CCWWGG	1 cut(s)	2394
Bst1107I	GTATAC	1 cut(s)	2587
Bst2BI	CACGAG	1 cut(s)	1893
Bst2UI	CCWGG	2 cut(s)	1491, 1836
Bst4CI	ACNGT	7 cut(s)	945, 1201, 1552, 1561, 1714, 2686, 2757
Bst6I	CTCTTC	8 cut(s)	315, 1058, 1085, 1834, 2154, 2165, 2231, 2394
BstACI	GRCGYC	2 cut(s)	5, 1685
BstAFI	CTTAAG	1 cut(s)	2120
BstAUI	TGTACA	1 cut(s)	1212
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	2 cut(s)	25, 1913
BstDSI	CCRYGG	1 cut(s)	2394
BstENI	CCTNNNNNAGG	1 cut(s)	1823
BstFNI	CGCG	1 cut(s)	1802
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 493, 687
BstMAI	GTCTC	3 cut(s)	1503, 1579, 2705
BstMWI	GCNNNNNNNGC	5 cut(s)	682, 932, 1337, 2663, 2747
BstNI	CCWGG	2 cut(s)	1491, 1836
BstNSI	RCATGY	3 cut(s)	535, 1219, 1915
BstSCI	CCNGG	4 cut(s)	375, 1403, 1489, 1834
BstSFI	CTRYAG	4 cut(s)	155, 291, 1206, 1710
BstSLI	GKGCMC	1 cut(s)	1696
BstUI	CGCG	1 cut(s)	1802
BstV1I	GCAGC	9 cut(s)	7, 127, 595, 960, 1330, 1352, 1625, 2604, 2653
BstV2I	GAAGAC	4 cut(s)	1943, 2122, 2641, 2719
BstX2I	RGATCY	5 cut(s)	197, 1444, 1706, 2272, 2314
BstYI	RGATCY	5 cut(s)	197, 1444, 1706, 2272, 2314
BstZ17I	GTATAC	1 cut(s)	2587
BsuI	GTATCC	2 cut(s)	1497, 1842
BsuRI	GGCC	1 cut(s)	926
BtgI	CCRYGG	1 cut(s)	2394
BtgZI	GCGATG	2 cut(s)	1340, 1585
BtsI	GCAGTG	4 cut(s)	589, 921, 1872, 2459
BtsIMutI	CAGTG	7 cut(s)	589, 921, 937, 1872, 2459, 2691, 2703
Cac8I	GCNNGC	2 cut(s)	25, 1913
CaiI	CAGNNNCTG	1 cut(s)	1205
CciI	TCATGA	3 cut(s)	538, 1134, 2530
CfoI	GCGC	3 cut(s)	7, 493, 687
Cfr13I	GGNCC	4 cut(s)	1046, 1163, 1919, 2365
CseI	GACGC	1 cut(s)	1693
Csp6I	GTAC	7 cut(s)	764, 823, 1108, 1213, 1548, 1791, 2304
CspCI	CAANNNNNGTGG	2 cut(s)	1533, 1568
CviQI	GTAC	7 cut(s)	764, 823, 1108, 1213, 1548, 1791, 2304
DinI	GGCGCC	1 cut(s)	6
Eam1104I	CTCTTC	8 cut(s)	315, 1058, 1085, 1834, 2154, 2165, 2231, 2394
EarI	CTCTTC	8 cut(s)	315, 1058, 1085, 1834, 2154, 2165, 2231, 2394
Eco130I	CCWWGG	1 cut(s)	2394
Eco24I	GRGCYC	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	2705
Eco47I	GGWCC	4 cut(s)	1046, 1163, 1919, 2365
Eco57I	CTGAAG	3 cut(s)	186, 1560, 2498
Eco72I	CACGTG	1 cut(s)	911
Eco88I	CYCGRG	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	1823
EcoRI	GAATTC	3 cut(s)	445, 739, 1529
EcoRII	CCWGG	2 cut(s)	1489, 1834
EcoT14I	CCWWGG	1 cut(s)	2394
EcoT22I	ATGCAT	1 cut(s)	1149
EcoT38I	GRGCYC	1 cut(s)	259
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	2394
FaqI	GGGAC	5 cut(s)	216, 1570, 1696, 1905, 2614
FauI	CCCGC	2 cut(s)	462, 866
FauNDI	CATATG	1 cut(s)	1993
FblI	GTMKAC	1 cut(s)	2586
FriOI	GRGCYC	1 cut(s)	259
FspBI	CTAG	8 cut(s)	468, 1337, 1458, 1689, 2301, 2312, 2426, 2484
GlaI	GCGC	3 cut(s)	6, 492, 686
GsaI	CCCAGC	2 cut(s)	882, 2217
GsuI	CTGGAG	2 cut(s)	864, 913
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	926
HapII	CCGG	5 cut(s)	8, 326, 340, 377, 1404
HgaI	GACGC	1 cut(s)	1693
HhaI	GCGC	3 cut(s)	7, 493, 687
Hin1I	GRCGYC	2 cut(s)	5, 1685
Hin6I	GCGC	3 cut(s)	5, 491, 685
HinP1I	GCGC	3 cut(s)	5, 491, 685
HindIII	AAGCTT	1 cut(s)	832
HpaII	CCGG	5 cut(s)	8, 326, 340, 377, 1404
HphI	GGTGA	5 cut(s)	510, 588, 1169, 1525, 2559
Hpy166II	GTNNAC	9 cut(s)	169, 706, 1049, 1108, 1213, 1694, 2057, 2287, 2587
Hpy8I	GTNNAC	9 cut(s)	169, 706, 1049, 1108, 1213, 1694, 2057, 2287, 2587
HpyAV	CCTTC	6 cut(s)	662, 1753, 2085, 2235, 2272, 2473
HpyCH4III	ACNGT	7 cut(s)	945, 1201, 1552, 1561, 1714, 2686, 2757
HpyCH4IV	ACGT	2 cut(s)	910, 1359
HpyF10VI	GCNNNNNNNGC	5 cut(s)	682, 932, 1337, 2663, 2747
HpySE526I	ACGT	2 cut(s)	910, 1359
Hsp92I	GRCGYC	2 cut(s)	5, 1685
HspAI	GCGC	3 cut(s)	5, 491, 685
KasI	GGCGCC	1 cut(s)	4
LguI	GCTCTTC	1 cut(s)	1085
LmnI	GCTCC	5 cut(s)	10, 95, 262, 770, 2095
Lsp1109I	GCAGC	9 cut(s)	7, 127, 595, 960, 1330, 1352, 1625, 2604, 2653
LweI	GCATC	2 cut(s)	1011, 1557
MaeI	CTAG	8 cut(s)	468, 1337, 1458, 1689, 2301, 2312, 2426, 2484
MaeII	ACGT	2 cut(s)	910, 1359
MaeIII	GTNAC	9 cut(s)	270, 302, 379, 565, 725, 1382, 1741, 1796, 2632
MbiI	CCGCTC	2 cut(s)	90, 873
MflI	RGATCY	5 cut(s)	197, 1444, 1706, 2272, 2314
MhlI	GDGCHC	2 cut(s)	259, 1696
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	28, 341, 2011, 2171, 2586
MmeI	TCCRAC	2 cut(s)	810, 1380
Mph1103I	ATGCAT	1 cut(s)	1149
MroXI	GAANNNNTTC	3 cut(s)	803, 1425, 2183
MseI	TTAA	8 cut(s)	65, 110, 756, 1253, 1362, 2121, 2144, 2381
MslI	CAYNNNNRTG	2 cut(s)	543, 1628
MspA1I	CMGCKG	3 cut(s)	20, 586, 1343
MspCI	CTTAAG	1 cut(s)	2120
MspI	CCGG	5 cut(s)	8, 326, 340, 377, 1404
MspR9I	CCNGG	4 cut(s)	377, 1405, 1491, 1836
Mva1269I	GAATGC	1 cut(s)	1907
MvaI	CCWGG	2 cut(s)	1491, 1836
MvnI	CGCG	1 cut(s)	1802
MwoI	GCNNNNNNNGC	5 cut(s)	682, 932, 1337, 2663, 2747
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	377, 1405
NcoI	CCATGG	1 cut(s)	2394
NdeI	CATATG	1 cut(s)	1993
NlaIV	GGNNCC	6 cut(s)	6, 258, 772, 1165, 1921, 2274
NmuCI	GTSAC	3 cut(s)	565, 1796, 2632
NsiI	ATGCAT	1 cut(s)	1149
NspI	RCATGY	3 cut(s)	535, 1219, 1915
PaeI	GCATGC	1 cut(s)	1915
PaeR7I	CTCGAG	1 cut(s)	279
PagI	TCATGA	3 cut(s)	538, 1134, 2530
PciI	ACATGT	1 cut(s)	531
PciSI	GCTCTTC	1 cut(s)	1085
PctI	GAATGC	1 cut(s)	1907
PdmI	GAANNNNTTC	3 cut(s)	803, 1425, 2183
PfeI	GAWTC	6 cut(s)	512, 887, 919, 1131, 2125, 2179
PflFI	GACNNNGTC	1 cut(s)	37
PflMI	CCANNNNNTGG	2 cut(s)	1982, 2659
PfoI	TCCNGGA	1 cut(s)	1834
PleI	GAGTC	5 cut(s)	28, 340, 2011, 2170, 2586
PluTI	GGCGCC	1 cut(s)	8
PmaCI	CACGTG	1 cut(s)	911
PmlI	CACGTG	1 cut(s)	911
PpsI	GAGTC	5 cut(s)	28, 340, 2011, 2170, 2586
Ppu21I	YACGTR	1 cut(s)	911
PscI	ACATGT	1 cut(s)	531
PshBI	ATTAAT	1 cut(s)	756
Psp1406I	AACGTT	1 cut(s)	1359
Psp6I	CCWGG	2 cut(s)	1489, 1834
PspCI	CACGTG	1 cut(s)	911
PspFI	CCCAGC	2 cut(s)	878, 2213
PspGI	CCWGG	2 cut(s)	1489, 1834
PspN4I	GGNNCC	6 cut(s)	6, 258, 772, 1165, 1921, 2274
PspPI	GGNCC	4 cut(s)	1046, 1163, 1919, 2365
PstI	CTGCAG	2 cut(s)	159, 295
PstNI	CAGNNNCTG	1 cut(s)	1205
PsuI	RGATCY	5 cut(s)	197, 1444, 1706, 2272, 2314
PsyI	GACNNNGTC	1 cut(s)	37
PvuII	CAGCTG	1 cut(s)	1343
RsaI	GTAC	7 cut(s)	765, 824, 1109, 1214, 1549, 1792, 2305
RsaNI	GTAC	7 cut(s)	764, 823, 1108, 1213, 1548, 1791, 2304
RseI	CAYNNNNRTG	2 cut(s)	543, 1628
SapI	GCTCTTC	1 cut(s)	1085
SaqAI	TTAA	8 cut(s)	65, 110, 756, 1253, 1362, 2121, 2144, 2381
Sau96I	GGNCC	4 cut(s)	1046, 1163, 1919, 2365
ScaI	AGTACT	3 cut(s)	765, 1549, 2305
SchI	GAGTC	5 cut(s)	28, 341, 2011, 2171, 2586
ScrFI	CCNGG	4 cut(s)	377, 1405, 1491, 1836
SduI	GDGCHC	2 cut(s)	259, 1696
SfaNI	GCATC	2 cut(s)	1011, 1557
SfcI	CTRYAG	4 cut(s)	155, 291, 1206, 1710
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	279
SinI	GGWCC	4 cut(s)	1046, 1163, 1919, 2365
SlaI	CTCGAG	1 cut(s)	279
SmiMI	CAYNNNNRTG	2 cut(s)	543, 1628
SmlI	CTYRAG	6 cut(s)	246, 279, 522, 1478, 1746, 2120
SmoI	CTYRAG	6 cut(s)	246, 279, 522, 1478, 1746, 2120
SphI	GCATGC	1 cut(s)	1915
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	8 cut(s)	468, 1337, 1458, 1689, 2301, 2312, 2426, 2484
StyD4I	CCNGG	4 cut(s)	375, 1403, 1489, 1834
StyI	CCWWGG	1 cut(s)	2394
TaaI	ACNGT	7 cut(s)	945, 1201, 1552, 1561, 1714, 2686, 2757
TaiI	ACGT	2 cut(s)	913, 1362
TaqI	TCGA	3 cut(s)	280, 625, 2422
TaqII	GACCGA	1 cut(s)	2382
TatI	WGTACW	5 cut(s)	763, 1212, 1547, 1790, 2303
TauI	GCSGC	5 cut(s)	589, 904, 1991, 2357, 2677
TfiI	GAWTC	6 cut(s)	512, 887, 919, 1131, 2125, 2179
Tru1I	TTAA	8 cut(s)	65, 110, 756, 1253, 1362, 2121, 2144, 2381
Tru9I	TTAA	8 cut(s)	65, 110, 756, 1253, 1362, 2121, 2144, 2381
TscAI	CASTG	7 cut(s)	596, 921, 937, 1872, 2459, 2691, 2710
TseFI	GTSAC	3 cut(s)	565, 1796, 2632
TseI	GCWGC	9 cut(s)	20, 140, 583, 973, 1340, 1343, 1638, 2617, 2666
Tsp45I	GTSAC	3 cut(s)	565, 1796, 2632
TspRI	CASTG	7 cut(s)	596, 921, 937, 1872, 2459, 2691, 2710
Tth111I	GACNNNGTC	1 cut(s)	37
Van91I	CCANNNNNTGG	2 cut(s)	1982, 2659
Vha464I	CTTAAG	1 cut(s)	2120
VneI	GTGCAC	1 cut(s)	1692
VpaK11BI	GGWCC	4 cut(s)	1046, 1163, 1919, 2365
VspI	ATTAAT	1 cut(s)	756
XagI	CCTNNNNNAGG	1 cut(s)	1823
XapI	RAATTY	8 cut(s)	445, 601, 739, 1257, 1312, 1529, 1579, 2430
XceI	RCATGY	3 cut(s)	535, 1219, 1915
XcmI	CCANNNNNNNNNTGG	2 cut(s)	100, 2392
XhoI	CTCGAG	1 cut(s)	279
XmiI	GTMKAC	1 cut(s)	2586
XmnI	GAANNNNTTC	3 cut(s)	803, 1425, 2183
XspI	CTAG	8 cut(s)	468, 1337, 1458, 1689, 2301, 2312, 2426, 2484
ZrmI	AGTACT	3 cut(s)	765, 1549, 2305
Zsp2I	ATGCAT	1 cut(s)	1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.