Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000814

Physical Location & Seq

Genomic Coordinates Reverse (-)

57062450 .. 57063364

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0436200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCACCGTCACTCCTGCTGCCGTTGCCATTCCCTCATTCAGCGGACTCAAGTCCGCCGGAGCAACCAAACTTGGCGCCACCTCCGTGAAGGTCTCAGCTGCAGTCCCAAGAATGAGCATCAAGTCCTCACTCAAGGACGTCGGTGTTGCAGTCGCTGCCACCGCCGCGAGTGCACTCCTCGCCAGCAATGCCTTGGCCATTGAGATCCTTCTCGGCGGCGACGATGGCTCCTTGGCTTTCGTCCCCAACGAGTTCTCCATCAGCCCCGGGGACAAGATCGTCTTCAAGAACAACGCTGGATTCCCACACAACATTGTCTTCGACGAGGACGAGATTCCCGGGGGTGTTAATGCCGGGAAAATCTCCATGAGCGAGGAGGATCTCCTCAACGCCCCAGGAGAGACCTACTCCGTTACCTTGACTGAAAAAGGAACCTACTCTTTCTACTGCTCTCCTCACCAGGGAGCTGGTATGTCCGGCAAGGTTACCGTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

166

Amino Acids

16.76

Weight (kDa)

5.06

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copper-bind	PF00127	69 - 166	7e-37	Copper binding proteins, plastocyanin/azurin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47740 AT3G47750 AT3G47760 AT3G47760 AT3G47760 AT3G47770 AT3G47770 AT3G47770 AT3G47780 AT3G47790 AT3G47790 AT3G47790 AT5G61700 AT5G61700 AT5G61700 AT5G61700 AT5G61740 AT5G61740 AT5G61740
fragaria_vesca	FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g15270 FvH4_5g17020
malus_domestica	MD00G1160300.v1.1 MD06G1189700.v1.1 MD14G1196600.v1.1
prunus_persica	Prupe.5G188500_v2.0.a1 Prupe.5G188500_v2.0.a1 Prupe.5G188700_v2.0.a1 Prupe.5G229600_v2.0.a1 Prupe.5G229600_v2.0.a1
pyrus_communis	pycom06g16850 pycom14g16330
rosa_chinensis	RchiOBHm_Chr7g0178831 RchiOBHm_Chr7g0180791 RchiOBHm_Chr7g0180811
rosa_laevigata	RLG00000005228 RLG00000005229 RLG00000005411
rosa_multiflora	Rmu_sc0007457.1_g000007 Rmu_sc0007457.1_g000009 Rmu_sc0025325.1_g000002 Rmu_sc0025325.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272510 Rroxscaffold_3G00272520 Rroxscaffold_3G00274540
rosa_rugosa	Rorug01G0115100 Rorug06G0420100 Rorug06G0420100 Rorug06G0436000 Rorug06G0436100 Rorug06G0436200 Rorug06G0436300
rosa_samantha	Rh1BG107000 Rh7AG019400 Rh7AG037800 Rh7AG038000 Rh7BG018900 Rh7BG037600 Rh7BG037800 Rh7CG019500 Rh7CG039200 Rh7CG039300 Rh7DG019300
rosa_wichuraiana	Rw7G001580 Rw7G003120 Rw7G003130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AatII	GACGTC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	77
AccII	CGCG	1 cut(s)	170
AciI	CCGC	5 cut(s)	45, 57, 165, 168, 219
AclWI	GGATC	2 cut(s)	202, 390
AcoI	YGGCCR	2 cut(s)	3, 198
AcyI	GRCGYC	2 cut(s)	78, 141
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	2 cut(s)	397, 462
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	2 cut(s)	101, 470
AluI	AGCT	2 cut(s)	101, 470
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	2 cut(s)	100, 398
Alw44I	GTGCAC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	202, 390
AlwNI	CAGNNNCTG	1 cut(s)	158
Ama87I	CYCGRG	2 cut(s)	269, 341
AoxI	GGCC	2 cut(s)	3, 198
ApaLI	GTGCAC	1 cut(s)	174
ApeKI	GCWGC	3 cut(s)	20, 101, 158
AspLEI	GCGC	1 cut(s)	80
AsuC2I	CCSGG	5 cut(s)	270, 271, 342, 343, 358
AsuHPI	GGTGA	1 cut(s)	452
AvaI	CYCGRG	2 cut(s)	269, 341
BaeGI	GKGCMC	1 cut(s)	178
BalI	TGGCCA	2 cut(s)	5, 200
BanI	GGYRCC	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	277, 313
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	3 cut(s)	7, 88, 145
BccI	CCATC	2 cut(s)	221, 269
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	2 cut(s)	399, 464
BcnI	CCSGG	5 cut(s)	270, 271, 342, 343, 358
BcoDI	GTCTC	2 cut(s)	100, 398
BfmI	CTRYAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	5 cut(s)	21, 102, 159, 168, 220
BlsI	GCNGC	5 cut(s)	22, 103, 160, 169, 221
Bme1390I	CCNGG	7 cut(s)	270, 271, 342, 343, 358, 399, 464
BmeT110I	CYCGRG	2 cut(s)	269, 341
BmiI	GGNNCC	3 cut(s)	79, 232, 436
BmrFI	CCNGG	7 cut(s)	270, 271, 342, 343, 358, 399, 464
BmsI	GCATC	1 cut(s)	129
BoxI	GACNNNNGTC	1 cut(s)	52
BpiI	GAAGAC	2 cut(s)	277, 313
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpuEI	CTTGAG	2 cut(s)	35, 119
BpuMI	CCSGG	5 cut(s)	270, 271, 342, 343, 358
BsaHI	GRCGYC	2 cut(s)	78, 141
BsaI	GGTCTC	2 cut(s)	100, 398
BsaJI	CCNNGG	9 cut(s)	195, 234, 268, 269, 270, 341, 342, 397, 463
BsaXI	ACNNNNNCTCC	5 cut(s)	28, 215, 242, 245, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	399, 464
BseDI	CCNNGG	9 cut(s)	195, 234, 268, 269, 270, 341, 342, 397, 463
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	111
BseRI	GAGGAG	4 cut(s)	170, 377, 392, 447
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	3 cut(s)	7, 88, 145
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	5, 200
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	178
BsiHKCI	CYCGRG	2 cut(s)	269, 341
BsiSI	CCGG	5 cut(s)	60, 270, 342, 357, 480
BslFI	GGGAC	3 cut(s)	92, 230, 287
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	2 cut(s)	100, 398
BsmFI	GGGAC	3 cut(s)	92, 230, 287
BsnI	GGCC	2 cut(s)	5, 200
Bso31I	GGTCTC	2 cut(s)	100, 398
BsoBI	CYCGRG	2 cut(s)	269, 341
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	207, 279, 382
BspACI	CCGC	5 cut(s)	45, 57, 165, 168, 219
BspANI	GGCC	2 cut(s)	5, 200
BspCNI	CTCAG	1 cut(s)	110
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	3 cut(s)	79, 232, 436
BspMAI	CTGCAG	1 cut(s)	106
BspPI	GGATC	2 cut(s)	202, 390
BspT107I	GGYRCC	1 cut(s)	77
BspTNI	GGTCTC	2 cut(s)	100, 398
BsrDI	GCAATG	1 cut(s)	196
BssECI	CCNNGG	9 cut(s)	195, 234, 268, 269, 270, 341, 342, 397, 463
BssMI	GATC	3 cut(s)	207, 279, 382
BssNI	GRCGYC	2 cut(s)	78, 141
BssT1I	CCWWGG	2 cut(s)	195, 234
Bst2UI	CCWGG	2 cut(s)	399, 464
Bst4CI	ACNGT	2 cut(s)	10, 493
BstACI	GRCGYC	2 cut(s)	78, 141
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	97
BstEII	GGTNACC	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	3 cut(s)	210, 282, 385
BstMAI	GTCTC	2 cut(s)	100, 398
BstMBI	GATC	3 cut(s)	207, 279, 382
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 158, 164, 167, 173, 182, 191, 228
BstNI	CCWGG	2 cut(s)	399, 464
BstPAI	GACNNNNGTC	1 cut(s)	52
BstPI	GGTNACC	1 cut(s)	487
BstSCI	CCNGG	7 cut(s)	268, 269, 340, 341, 356, 397, 462
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	178
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	3 cut(s)	7, 88, 145
BstV2I	GAAGAC	2 cut(s)	277, 313
BstX2I	RGATCY	2 cut(s)	207, 382
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	2 cut(s)	207, 382
BsuRI	GGCC	2 cut(s)	5, 200
Cac8I	GCNNGC	1 cut(s)	187
CaiI	CAGNNNCTG	1 cut(s)	158
CfoI	GCGC	1 cut(s)	80
Cfr9I	CCCGGG	2 cut(s)	269, 341
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	7 cut(s)	5, 101, 200, 231, 239, 267, 470
CviKI_1	RGCY	7 cut(s)	5, 101, 200, 231, 239, 267, 470
DdeI	CTNAG	1 cut(s)	97
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	3 cut(s)	209, 281, 384
DpnII	GATC	3 cut(s)	207, 279, 382
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	2 cut(s)	3, 198
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	195, 234
Eco31I	GGTCTC	2 cut(s)	100, 398
Eco88I	CYCGRG	2 cut(s)	269, 341
Eco91I	GGTNACC	1 cut(s)	487
EcoO65I	GGTNACC	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	397, 462
EcoT14I	CCWWGG	2 cut(s)	195, 234
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	195, 234
FaeI	CATG	1 cut(s)	373
FaiI	YATR	2 cut(s)	371, 476
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FaqI	GGGAC	3 cut(s)	92, 230, 287
FatI	CATG	1 cut(s)	369
Fnu4HI	GCNGC	5 cut(s)	21, 102, 159, 168, 220
Fsp4HI	GCNGC	5 cut(s)	21, 102, 159, 168, 220
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	5 cut(s)	21, 102, 159, 168, 220
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	5, 200
HapII	CCGG	5 cut(s)	60, 270, 342, 357, 480
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	2 cut(s)	78, 141
Hin1II	CATG	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	3 cut(s)	48, 303, 337
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	5 cut(s)	60, 270, 342, 357, 480
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	2 cut(s)	176, 496
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	2 cut(s)	176, 496
Hpy99I	CGWCG	3 cut(s)	146, 227, 329
HpyAV	CCTTC	2 cut(s)	85, 221
HpyCH4III	ACNGT	2 cut(s)	10, 493
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	104, 152, 176
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 158, 164, 167, 173, 182, 191, 228
HpyF3I	CTNAG	1 cut(s)	97
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	2 cut(s)	78, 141
Hsp92II	CATG	1 cut(s)	373
HspAI	GCGC	1 cut(s)	78
KasI	GGCGCC	1 cut(s)	77
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	207, 279, 382
LmnI	GCTCC	3 cut(s)	62, 236, 467
Lsp1109I	GCAGC	3 cut(s)	7, 88, 145
LweI	GCATC	1 cut(s)	129
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	3 cut(s)	10, 415, 487
MalI	GATC	3 cut(s)	209, 281, 384
MboI	GATC	3 cut(s)	207, 279, 382
MboII	GAAGA	2 cut(s)	277, 313
MflI	RGATCY	2 cut(s)	207, 382
MhlI	GDGCHC	1 cut(s)	178
MlsI	TGGCCA	2 cut(s)	5, 200
MluNI	TGGCCA	2 cut(s)	5, 200
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	9 cut(s)	46, 94, 139, 191, 322, 370, 373, 398, 468
Mox20I	TGGCCA	2 cut(s)	5, 200
MscI	TGGCCA	2 cut(s)	5, 200
MseI	TTAA	2 cut(s)	351, 495
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	2 cut(s)	5, 200
MspA1I	CMGCKG	2 cut(s)	45, 101
MspI	CCGG	5 cut(s)	60, 270, 342, 357, 480
MspR9I	CCNGG	7 cut(s)	270, 271, 342, 343, 358, 399, 464
MvaI	CCWGG	2 cut(s)	399, 464
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	8 cut(s)	26, 158, 164, 167, 173, 182, 191, 228
NarI	GGCGCC	1 cut(s)	78
NciI	CCSGG	5 cut(s)	270, 271, 342, 343, 358
NdeII	GATC	3 cut(s)	207, 279, 382
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	3 cut(s)	79, 232, 436
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	10
OliI	CACNNNNGTG	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	3 cut(s)	222, 249, 330
PfeI	GAWTC	2 cut(s)	303, 337
PkrI	GCNGC	5 cut(s)	22, 103, 160, 169, 221
PleI	GAGTC	1 cut(s)	42
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	42
PshAI	GACNNNNGTC	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	397, 462
PspEI	GGTNACC	1 cut(s)	487
PspGI	CCWGG	2 cut(s)	397, 462
PspN4I	GGNNCC	3 cut(s)	79, 232, 436
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	2 cut(s)	207, 382
PvuII	CAGCTG	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	351, 495
SatI	GCNGC	5 cut(s)	21, 102, 159, 168, 220
Sau3AI	GATC	3 cut(s)	207, 279, 382
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	7 cut(s)	270, 271, 342, 343, 358, 399, 464
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	9 cut(s)	86, 96, 103, 144, 410, 422, 440, 472, 489
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	102
SfoI	GGCGCC	1 cut(s)	79
SmaI	CCCGGG	2 cut(s)	271, 343
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	50, 134
SmoI	CTYRAG	2 cut(s)	50, 134
SsiI	CCGC	5 cut(s)	45, 57, 165, 168, 219
SspDI	GGCGCC	1 cut(s)	77
StyD4I	CCNGG	7 cut(s)	268, 269, 340, 341, 356, 397, 462
StyI	CCWWGG	2 cut(s)	195, 234
TaaI	ACNGT	2 cut(s)	10, 493
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	324
TauI	GCSGC	2 cut(s)	170, 222
TfiI	GAWTC	2 cut(s)	303, 337
Tru1I	TTAA	2 cut(s)	351, 495
Tru9I	TTAA	2 cut(s)	351, 495
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	3 cut(s)	20, 101, 158
Tsp45I	GTSAC	1 cut(s)	10
TspGWI	ACGGA	2 cut(s)	76, 403
TspMI	CCCGGG	2 cut(s)	269, 341
VneI	GTGCAC	1 cut(s)	174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XmaI	CCCGGG	2 cut(s)	269, 341
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.