Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008097

Physical Location & Seq

Genomic Coordinates Reverse (-)

35671948 .. 35674657

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1160500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGTGGACACCAATGGCAACGGCGGCAGCCATGAGGTCCTGATGCTTGAAGCTCCGCCGCCGGAAGGTCCGGCATGGCCGGGACCTCTAACCAATGCCGAAACCATCGACGCCTTGCCCTACATCGACGACGACTACGCCAACCCCGACGTCAAGCGCGAGGTCGACCGCATGGTGGAGGAGGAGTTGCGGCGCAGCGCCAAGAAGCCCGCCGATTTCCTCAAGGAGTTGCCGCCTCTTCCCAAGCCCAATTTCAAGGATCATCCGATGCTGGCTAGGGAGTACGAACGGGTGAGAGCGTCGCGGCCTCCGGTGGCGATTGATTTTTCGAGAGACAAAGTGGAGCCGCCGCCGGTGAATAAATTGAACGATGAAACTGCTTGGAAACTTGCTCTCCAGAAATCTCAGTGCTCTCTGCAGCACCAAGCCGTCAGGTTGGAGAATTTGGAGCTGATTGACAAGTATGGTCCTGAAGCCTGGATTCAGAACAACAATCGATTGCAATCAATTTTGTCGAGAATGCAGAAATTAGCTCAGGAGCAATATCAAAATATTGAAACAGTGAATCGTGAAAGAAAACATCATCAGCAAACCACTGCGTATGAGCTCAATGCTTTGTCTGCTCAATGGAAGGAGCTTTGTCAGAAGAATATAGAAATTCAATCTGCATGTGTTAATCTTGAAAACCATCTTGAAGGATTGAGGAGGGAAGCAGCCGAAAGAGGATGGAACCTGGAAGCCAATGCAGAAAATGGTTCTCTATTGAACGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009987 GO:0010204 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032991 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070013 GO:0071011 GO:0071013 GO:0080134 GO:0098542 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

BCAS2

Protein Analysis

259

Amino Acids

29.5

Weight (kDa)

5.25

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCAS2	PF05700	34 - 240	6.3e-68	Breast carcinoma amplified sequence 2 (BCAS2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18165
fragaria_vesca	FvH4_5g17030 FvH4_5g17030 FvH4_5g17030 FvH4_5g17030
malus_domestica	MD00G1160500.v1.1 MD14G1233600.v1.1
prunus_persica	Prupe.5G229800_v2.0.a1
pyrus_communis	pycom14g19460
rosa_chinensis	RchiOBHm_Chr7g0178821
rosa_laevigata	RLG00000005412 RLG00000032628
rosa_multiflora	Rmu_co8249681.1_g000001 Rmu_sc0015029.1_g000006 Rmu_sc0025325.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274550
rosa_rugosa	Rorug06G0420000 Rorug06G0420100
rosa_samantha	Rh1BG107100 Rh7AG019300 Rh7BG018800 Rh7CG019400 Rh7DG019200
rosa_wichuraiana	Rw7G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	2 cut(s)	159, 304
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	442, 657
AcuI	CTGAAG	1 cut(s)	492
AcyI	GRCGYC	2 cut(s)	111, 150
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	65, 175
AgsI	TTSAA	8 cut(s)	50, 256, 367, 557, 662, 683, 695, 766
AjnI	CCWGG	2 cut(s)	476, 732
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	5 cut(s)	53, 451, 533, 607, 637
AluI	AGCT	5 cut(s)	53, 451, 533, 607, 637
Alw21I	GWGCWC	2 cut(s)	413, 609
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	2 cut(s)	77, 305
ApeKI	GCWGC	4 cut(s)	27, 195, 418, 713
ApoI	RAATTY	2 cut(s)	442, 657
AspLEI	GCGC	3 cut(s)	159, 195, 200
AspS9I	GGNCC	4 cut(s)	37, 68, 83, 467
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	304, 367
AvaII	GGWCC	4 cut(s)	37, 68, 83, 467
BanII	GRGCYC	1 cut(s)	609
Bbv12I	GWGCWC	2 cut(s)	413, 609
BbvI	GCAGC	4 cut(s)	39, 207, 430, 725
BccI	CCATC	3 cut(s)	113, 696, 720
BceAI	ACGGC	2 cut(s)	37, 413
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	2 cut(s)	478, 734
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	416
BfoI	RGCGCY	1 cut(s)	201
Bme1390I	CCNGG	3 cut(s)	81, 478, 734
Bme18I	GGWCC	4 cut(s)	37, 68, 83, 467
BmgT120I	GGNCC	4 cut(s)	37, 68, 83, 467
BmiI	GGNNCC	3 cut(s)	84, 345, 731
BmrFI	CCNGG	3 cut(s)	81, 478, 734
BmsI	GCATC	2 cut(s)	33, 258
BpmI	CTGGAG	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	81
Bsa29I	ATCGAT	1 cut(s)	496
BsaBI	GATNNNNATC	1 cut(s)	502
BsaHI	GRCGYC	2 cut(s)	111, 150
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 378, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 175
Bse118I	RCCGGY	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	502
BseBI	CCWGG	2 cut(s)	478, 734
BseCI	ATCGAT	1 cut(s)	496
BseGI	GGATG	2 cut(s)	262, 731
BseJI	GATNNNNATC	1 cut(s)	502
BseLI	CCNNNNNNNGG	2 cut(s)	65, 175
BseMII	CTCAG	2 cut(s)	419, 548
BseRI	GAGGAG	3 cut(s)	194, 197, 718
BseXI	GCAGC	4 cut(s)	39, 207, 430, 725
Bsh1236I	CGCG	2 cut(s)	159, 304
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	79, 307
BshVI	ATCGAT	1 cut(s)	496
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	413, 609
BsiSI	CCGG	5 cut(s)	62, 71, 80, 311, 353
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	65, 175
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	525
BsnI	GGCC	2 cut(s)	79, 307
Bsp1286I	GDGCHC	2 cut(s)	413, 609
Bsp143I	GATC	1 cut(s)	259
BspANI	GGCC	2 cut(s)	79, 307
BspCNI	CTCAG	2 cut(s)	418, 547
BspDI	ATCGAT	1 cut(s)	496
BspFNI	CGCG	2 cut(s)	159, 304
BspLI	GGNNCC	3 cut(s)	84, 345, 731
BspMAI	CTGCAG	1 cut(s)	420
BspPI	GGATC	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	352
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	2 cut(s)	111, 150
Bst2UI	CCWGG	2 cut(s)	478, 734
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	2 cut(s)	111, 150
BstC8I	GCNNGC	2 cut(s)	210, 273
BstDEI	CTNAG	2 cut(s)	405, 534
BstF5I	GGATG	2 cut(s)	262, 731
BstFNI	CGCG	2 cut(s)	159, 304
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	3 cut(s)	159, 195, 200
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	259
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 620
BstNI	CCWGG	2 cut(s)	478, 734
BstNSI	RCATGY	1 cut(s)	672
BstSCI	CCNGG	3 cut(s)	79, 476, 732
BstSFI	CTRYAG	1 cut(s)	416
BstUI	CGCG	2 cut(s)	159, 304
BstV1I	GCAGC	4 cut(s)	39, 207, 430, 725
Bsu15I	ATCGAT	1 cut(s)	496
BsuRI	GGCC	2 cut(s)	79, 307
BsuTUI	ATCGAT	1 cut(s)	496
BtsCI	GGATG	2 cut(s)	262, 731
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	3 cut(s)	413, 567, 594
Cac8I	GCNNGC	2 cut(s)	210, 273
CfoI	GCGC	3 cut(s)	159, 195, 200
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	4 cut(s)	37, 68, 83, 467
ClaI	ATCGAT	1 cut(s)	496
CseI	GACGC	2 cut(s)	119, 288
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	4 cut(s)	32, 75, 172, 669
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	2 cut(s)	405, 534
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	607
Eco24I	GRGCYC	1 cut(s)	609
Eco47I	GGWCC	4 cut(s)	37, 68, 83, 467
Eco53kI	GAGCTC	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	492
EcoICRI	GAGCTC	1 cut(s)	607
EcoO109I	RGGNCCY	2 cut(s)	37, 83
EcoRII	CCWGG	2 cut(s)	476, 732
EcoT38I	GRGCYC	1 cut(s)	609
FaeI	CATG	4 cut(s)	35, 78, 175, 672
FaiI	YATR	7 cut(s)	33, 76, 173, 465, 603, 653, 670
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	4 cut(s)	31, 74, 171, 668
FauI	CCCGC	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	165
FokI	GGATG	2 cut(s)	249, 738
FriOI	GRGCYC	1 cut(s)	609
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	3 cut(s)	158, 194, 199
GsuI	CTGGAG	1 cut(s)	380
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	79, 307
HapII	CCGG	5 cut(s)	62, 71, 80, 311, 353
HgaI	GACGC	2 cut(s)	119, 288
HhaI	GCGC	3 cut(s)	159, 195, 200
Hin1I	GRCGYC	2 cut(s)	111, 150
Hin1II	CATG	4 cut(s)	35, 78, 175, 672
Hin6I	GCGC	3 cut(s)	157, 193, 198
HinP1I	GCGC	3 cut(s)	157, 193, 198
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	2 cut(s)	481, 565
HpaII	CCGG	5 cut(s)	62, 71, 80, 311, 353
HphI	GGTGA	2 cut(s)	304, 367
Hpy166II	GTNNAC	2 cut(s)	7, 166
Hpy188I	TCNGA	3 cut(s)	267, 486, 645
Hpy188III	TCNNGA	9 cut(s)	40, 330, 397, 470, 516, 536, 569, 680, 692
Hpy8I	GTNNAC	2 cut(s)	7, 166
Hpy99I	CGWCG	5 cut(s)	113, 131, 134, 152, 304
HpyAV	CCTTC	3 cut(s)	59, 625, 689
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	418, 502, 523, 668, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 620
HpyF3I	CTNAG	2 cut(s)	405, 534
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	2 cut(s)	111, 150
Hsp92II	CATG	4 cut(s)	35, 78, 175, 672
HspAI	GCGC	3 cut(s)	157, 193, 198
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	5 cut(s)	58, 343, 448, 538, 634
Lsp1109I	GCAGC	4 cut(s)	39, 207, 430, 725
LweI	GCATC	2 cut(s)	33, 258
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	150
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	230, 658
MhlI	GDGCHC	2 cut(s)	413, 609
MluCI	AATT	6 cut(s)	250, 362, 442, 507, 527, 657
MmeI	TCCRAC	1 cut(s)	417
MseI	TTAA	1 cut(s)	675
MspI	CCGG	5 cut(s)	62, 71, 80, 311, 353
MspR9I	CCNGG	3 cut(s)	81, 478, 734
MteI	GCGCNGCGC	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	525
MvaI	CCWGG	2 cut(s)	478, 734
MvnI	CGCG	2 cut(s)	159, 304
MwoI	GCNNNNNNNGC	2 cut(s)	24, 620
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	4 cut(s)	35, 78, 175, 672
NlaIV	GGNNCC	3 cut(s)	84, 345, 731
NspI	RCATGY	1 cut(s)	672
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 156
PctI	GAATGC	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	481, 565
PpuMI	RGGWCCY	2 cut(s)	37, 83
Psp124BI	GAGCTC	1 cut(s)	609
Psp5II	RGGWCCY	2 cut(s)	37, 83
Psp6I	CCWGG	2 cut(s)	476, 732
PspGI	CCWGG	2 cut(s)	476, 732
PspN4I	GGNNCC	3 cut(s)	84, 345, 731
PspPI	GGNCC	4 cut(s)	37, 68, 83, 467
PspPPI	RGGWCCY	2 cut(s)	37, 83
PstI	CTGCAG	1 cut(s)	420
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SacI	GAGCTC	1 cut(s)	609
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	675
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	4 cut(s)	37, 68, 83, 467
ScrFI	CCNGG	3 cut(s)	81, 478, 734
SduI	GDGCHC	2 cut(s)	413, 609
SfaNI	GCATC	2 cut(s)	33, 258
SfcI	CTRYAG	1 cut(s)	416
SgrAI	CRCCGGYG	1 cut(s)	352
SinI	GGWCC	4 cut(s)	37, 68, 83, 467
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	6 cut(s)	250, 362, 442, 507, 527, 657
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	1 cut(s)	276
SstI	GAGCTC	1 cut(s)	609
StyD4I	CCNGG	3 cut(s)	79, 476, 732
TaaI	ACNGT	1 cut(s)	562
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	6 cut(s)	108, 126, 165, 329, 496, 515
TasI	AATT	6 cut(s)	250, 362, 442, 507, 527, 657
TauI	GCSGC	7 cut(s)	27, 61, 193, 235, 307, 349, 352
TfiI	GAWTC	2 cut(s)	481, 565
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	3 cut(s)	413, 567, 601
TseI	GCWGC	4 cut(s)	27, 195, 418, 713
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	3 cut(s)	413, 567, 601
VpaK11BI	GGWCC	4 cut(s)	37, 68, 83, 467
XapI	RAATTY	2 cut(s)	442, 657
XceI	RCATGY	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	276
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.