Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008097

Physical Location & Seq

Genomic Coordinates Forward (+)

17120015 .. 17120413

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032628

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGGAGGTGGCGATAGAACCAAAGGCGTTGGAGGTGGAGAAGCCTCTTGCACTCTCTTCCTTCTCAACTGCAAAGGTTTTACCAAAAAAAATAATAAAAAGACTCCCTAAACTCTCTCTCCGATACTTCACACAGCTCACAACAATGGCGAGCACCACCGCCGCCACCGGTAACAAAATCTTAATGTTAGAAGCTCCACCGCAAGGTTTGTCGTGGCCGAGCCCCTTAACCAACGCCAAGATCATTGATGCCTTGCTATACATCGACGACGACTACTACGCTAGTGTAGCCGTCATGAAAGAGGTAGACCTCATGGTGGAGGAAGAGCTCCATCGCAATGCCAAAAGGCTCGCCGATTGCCCCCACTCGTCAAGCCAACTTTCAAGAATAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009987 GO:0010204 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032991 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070013 GO:0071011 GO:0071013 GO:0080134 GO:0098542 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

BCAS2

Protein Analysis

133

Amino Acids

14.61

Weight (kDa)

7.83

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18165
fragaria_vesca	FvH4_5g17030 FvH4_5g17030 FvH4_5g17030 FvH4_5g17030
malus_domestica	MD00G1160500.v1.1 MD14G1233600.v1.1
prunus_persica	Prupe.5G229800_v2.0.a1
pyrus_communis	pycom14g19460
rosa_chinensis	RchiOBHm_Chr7g0178821
rosa_laevigata	RLG00000005412 RLG00000032628
rosa_multiflora	Rmu_co8249681.1_g000001 Rmu_sc0015029.1_g000006 Rmu_sc0025325.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274550
rosa_rugosa	Rorug06G0420000 Rorug06G0420100
rosa_samantha	Rh1BG107100 Rh7AG019300 Rh7BG018800 Rh7CG019400 Rh7DG019200
rosa_wichuraiana	Rw7G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	4 cut(s)	5, 162, 165, 203
AcoI	YGGCCR	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	206, 319
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	387
AluBI	AGCT	3 cut(s)	139, 197, 331
AluI	AGCT	3 cut(s)	139, 197, 331
Alw21I	GWGCWC	2 cut(s)	158, 333
AoxI	GGCC	1 cut(s)	218
AsiGI	ACCGGT	1 cut(s)	170
BanII	GRGCYC	2 cut(s)	227, 333
Bbv12I	GWGCWC	2 cut(s)	158, 333
BccI	CCATC	1 cut(s)	342
BceAI	ACGGC	1 cut(s)	278
BfaI	CTAG	2 cut(s)	285, 397
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmsI	GCATC	1 cut(s)	241
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 319
Bse118I	RCCGGY	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	2 cut(s)	206, 319
BseMI	GCAATG	1 cut(s)	346
BshFI	GGCC	1 cut(s)	220
BshTI	ACCGGT	1 cut(s)	170
BsiHKAI	GWGCWC	2 cut(s)	158, 333
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	2 cut(s)	206, 319
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	3 cut(s)	158, 227, 333
Bsp143I	GATC	1 cut(s)	243
BspACI	CCGC	4 cut(s)	5, 162, 165, 203
BspANI	GGCC	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssMI	GATC	1 cut(s)	243
Bst6I	CTCTTC	2 cut(s)	64, 321
BstC8I	GCNNGC	2 cut(s)	154, 354
BstKTI	GATC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 290
BsuRI	GGCC	1 cut(s)	220
BtgZI	GCGATG	1 cut(s)	320
Cac8I	GCNNGC	2 cut(s)	154, 354
CciI	TCATGA	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	170
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	2 cut(s)	298, 316
CviJI	RGCY	9 cut(s)	46, 139, 197, 220, 225, 293, 331, 352, 378
CviKI_1	RGCY	9 cut(s)	46, 139, 197, 220, 225, 293, 331, 352, 378
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	218
Eam1104I	CTCTTC	2 cut(s)	64, 321
EarI	CTCTTC	2 cut(s)	64, 321
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	2 cut(s)	227, 333
Eco53kI	GAGCTC	1 cut(s)	331
EcoICRI	GAGCTC	1 cut(s)	331
EcoT38I	GRGCYC	2 cut(s)	227, 333
FaeI	CATG	2 cut(s)	301, 319
FaiI	YATR	3 cut(s)	262, 299, 317
FatI	CATG	2 cut(s)	297, 315
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	165
FriOI	GRGCYC	2 cut(s)	227, 333
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	285, 397
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	2 cut(s)	301, 319
HinfI	GANTC	1 cut(s)	105
HpaII	CCGG	1 cut(s)	171
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	125
Hpy188III	TCNNGA	2 cut(s)	298, 387
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	2 cut(s)	272, 275
HpyAV	CCTTC	1 cut(s)	73
HpyCH4V	TGCA	2 cut(s)	53, 74
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 290
Hsp92II	CATG	2 cut(s)	301, 319
Kzo9I	GATC	1 cut(s)	243
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	2 cut(s)	202, 336
LpnPI	CCDG	1 cut(s)	184
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	2 cut(s)	285, 397
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MboII	GAAGA	2 cut(s)	51, 338
MhlI	GDGCHC	3 cut(s)	158, 227, 333
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	5 cut(s)	28, 57, 298, 316, 323
MseI	TTAA	2 cut(s)	185, 230
MslI	CAYNNNNRTG	2 cut(s)	146, 339
MspI	CCGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	11, 290
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	2 cut(s)	301, 319
NmeAIII	GCCGAG	1 cut(s)	246
PagI	TCATGA	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	321
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	333
RseI	CAYNNNNRTG	2 cut(s)	146, 339
SacI	GAGCTC	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	185, 230
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	243
SchI	GAGTC	1 cut(s)	99
SduI	GDGCHC	3 cut(s)	158, 227, 333
SetI	ASST	9 cut(s)	12, 39, 81, 141, 199, 211, 309, 315, 333
SfaNI	GCATC	1 cut(s)	241
SmiMI	CAYNNNNRTG	2 cut(s)	146, 339
SsiI	CCGC	4 cut(s)	5, 162, 165, 203
SspMI	CTAG	2 cut(s)	285, 397
SstI	GAGCTC	1 cut(s)	333
TaqI	TCGA	1 cut(s)	267
TauI	GCSGC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	185, 230
Tru9I	TTAA	2 cut(s)	185, 230
TspDTI	ATGAA	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	2 cut(s)	285, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.