Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8249681.1

Orthogroup ID

OG0008097

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 733

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8249681.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 253 bp

attgcagaaattaactcatgaacgctctcaaatgattggaactgtgaatcgtgaaaggaaagaacatcagcaaaacactgcatatgagcttaatgctttatctgcgcaatggaaggaactttctctgaaaaacatagaaattcaagccgcatgtgctaaaatagaaaattatatagatgaactcaaaaaggaagctgcagagagaggctgggacttaaaaccagtggagaatggcccgttgaattctgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009987 GO:0010204 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032991 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070013 GO:0071011 GO:0071013 GO:0080134 GO:0098542 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

BCAS2

Protein Analysis

83

Amino Acids

9.59

Weight (kDa)

5.73

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18165
fragaria_vesca	FvH4_5g17030 FvH4_5g17030 FvH4_5g17030 FvH4_5g17030
malus_domestica	MD00G1160500.v1.1 MD14G1233600.v1.1
prunus_persica	Prupe.5G229800_v2.0.a1
pyrus_communis	pycom14g19460
rosa_chinensis	RchiOBHm_Chr7g0178821
rosa_laevigata	RLG00000005412 RLG00000032628
rosa_multiflora	Rmu_co8249681.1_g000001 Rmu_sc0015029.1_g000006 Rmu_sc0025325.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274550
rosa_rugosa	Rorug06G0420000 Rorug06G0420100
rosa_samantha	Rh1BG107100 Rh7AG019300 Rh7BG018800 Rh7CG019400 Rh7DG019200
rosa_wichuraiana	Rw7G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	106
AciI	CCGC	1 cut(s)	148
AcsI	RAATTY	2 cut(s)	139, 242
AgsI	TTSAA	2 cut(s)	144, 242
AluBI	AGCT	2 cut(s)	89, 195
AluI	AGCT	2 cut(s)	89, 195
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	2 cut(s)	139, 242
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	2 cut(s)	148, 196
BlsI	GCNGC	2 cut(s)	149, 197
BmgT120I	GGNCC	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	182
BseYI	CCCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	235
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	17
BspMAI	CTGCAG	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 153
BstNSI	RCATGY	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 229
CciI	TCATGA	1 cut(s)	17
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	234
CviAII	CATG	2 cut(s)	18, 151
CviJI	RGCY	5 cut(s)	89, 147, 195, 208, 235
CviKI_1	RGCY	5 cut(s)	89, 147, 195, 208, 235
EcoRI	GAATTC	1 cut(s)	242
FaeI	CATG	2 cut(s)	21, 154
FaiI	YATR	7 cut(s)	19, 83, 85, 135, 152, 172, 174
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	2 cut(s)	17, 150
FauNDI	CATATG	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	148, 196
Fsp4HI	GCNGC	2 cut(s)	148, 196
FspI	TGCGCA	1 cut(s)	106
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	2 cut(s)	148, 196
GsaI	CCCAGC	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	21, 154
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	1 cut(s)	47
Hpy188I	TCNGA	2 cut(s)	127, 248
Hpy188III	TCNNGA	2 cut(s)	18, 51
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	3 cut(s)	5, 81, 198
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 153
Hsp92II	CATG	2 cut(s)	21, 154
HspAI	GCGC	1 cut(s)	105
LpnPI	CCDG	2 cut(s)	194, 235
Lsp1109I	GCAGC	1 cut(s)	182
MluCI	AATT	4 cut(s)	9, 139, 167, 242
MnlI	CCTC	1 cut(s)	198
MseI	TTAA	3 cut(s)	12, 91, 216
MwoI	GCNNNNNNNGC	2 cut(s)	102, 153
NdeI	CATATG	1 cut(s)	83
NlaIII	CATG	2 cut(s)	21, 154
NsbI	TGCGCA	1 cut(s)	106
NspI	RCATGY	1 cut(s)	154
PagI	TCATGA	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	149, 197
PspFI	CCCAGC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	200
SaqAI	TTAA	3 cut(s)	12, 91, 216
SatI	GCNGC	2 cut(s)	148, 196
Sau96I	GGNCC	1 cut(s)	234
SetI	ASST	2 cut(s)	91, 197
SfcI	CTRYAG	1 cut(s)	196
SgeI	CNNG	7 cut(s)	30, 63, 156, 163, 221, 234, 248
Sse9I	AATT	4 cut(s)	9, 139, 167, 242
SsiI	CCGC	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	44
TasI	AATT	4 cut(s)	9, 139, 167, 242
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	3 cut(s)	12, 91, 216
Tru9I	TTAA	3 cut(s)	12, 91, 216
TscAI	CASTG	2 cut(s)	83, 229
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	2 cut(s)	34, 193
TspRI	CASTG	2 cut(s)	83, 229
XapI	RAATTY	2 cut(s)	139, 242
XceI	RCATGY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.