Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008097

Physical Location & Seq

Genomic Coordinates Reverse (-)

66183580 .. 66186587

Gene Structure 3008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCGAACACCACCTCCACCGCCAGCAACGAAATCTTAATGTTAGAAGCTCCGCCGCAAGGTCCGTCGTGGCCGGGCCCCTTAACTAACGCCGAGATCATCGACGCCTTGCCGTACATCGATGAAGACTACTACGCCAGCGCAGCCGTCAAGAGAGAGGTCGACCTCATGGTGGAGGAAGAGCTCCGTCGCAGCGCCAAAAAGCCCGCCGATTTCCTCAAAGACTTGCCTCCACTCGCCAAGCCCAATTTCAAGAATAATCCAGTTCTGGCTAGAGAGTACGACCGCGTGAGAGCTTCCAAGCCTCCCGTGGTTCTTGATTTCTCCAGAGATAAAGCGGAGATGCCGAAGAGGACTGATGAAGCTGCTTGGAGACAGGCTCTTCAGAAAGCTCAGTGCTTTTCGCAGCACAATGTCGTCAGGTTGGAGAATTTGGAGCTGATGGATAAGTATGGCCCTGATGCCTGGATTCAGTACAACAATGTATTGCAATCACTTTTGTCGAGATTGCAGAAATTAACTCATGAACGCTCTCAAATGATTGGAACCGTGAATCGGGAAAGGAAAGAACATCAGCAAAACACTGCATATGAGCTTAATGCTTTATCTGCGCAATGGAAGGAACTTTCTCTGAAAAACATAGAAATTCAAGCCGCATGTGCTAAAATTGAAAATTATATAGATGAACTCAAAAAGGAAGCTGCAGAGAGAGGCTGGGACTTAAAACCAGTGGAGAATGGCCCGTTGAGTTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009987 GO:0010204 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032991 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070013 GO:0071011 GO:0071013 GO:0080134 GO:0098542 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

BCAS2

Protein Analysis

252

Amino Acids

28.76

Weight (kDa)

5.49

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCAS2	PF05700	32 - 236	9.2e-60	Breast carcinoma amplified sequence 2 (BCAS2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18165
fragaria_vesca	FvH4_5g17030 FvH4_5g17030 FvH4_5g17030 FvH4_5g17030
malus_domestica	MD00G1160500.v1.1 MD14G1233600.v1.1
prunus_persica	Prupe.5G229800_v2.0.a1
pyrus_communis	pycom14g19460
rosa_chinensis	RchiOBHm_Chr7g0178821
rosa_laevigata	RLG00000005412 RLG00000032628
rosa_multiflora	Rmu_co8249681.1_g000001 Rmu_sc0015029.1_g000006 Rmu_sc0025325.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274550
rosa_rugosa	Rorug06G0420000 Rorug06G0420100
rosa_samantha	Rh1BG107100 Rh7AG019300 Rh7BG018800 Rh7CG019400 Rh7DG019200
rosa_wichuraiana	Rw7G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	612
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	288
AciI	CCGC	7 cut(s)	21, 53, 56, 207, 286, 338, 654
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	430, 645
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	3 cut(s)	116, 281, 476
AfiI	CCNNNNNNNGG	3 cut(s)	59, 172, 555
AgsI	TTSAA	3 cut(s)	253, 650, 671
AjnI	CCWGG	1 cut(s)	464
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	8 cut(s)	50, 184, 296, 365, 392, 439, 595, 701
AluI	AGCT	8 cut(s)	50, 184, 296, 365, 392, 439, 595, 701
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	367
AoxI	GGCC	4 cut(s)	71, 76, 454, 739
ApaI	GGGCCC	1 cut(s)	80
ApeKI	GCWGC	5 cut(s)	143, 192, 365, 406, 701
ApoI	RAATTY	2 cut(s)	430, 645
AspLEI	GCGC	3 cut(s)	143, 197, 613
AspS9I	GGNCC	5 cut(s)	62, 76, 77, 455, 740
AsuC2I	CCSGG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	80
BanII	GRGCYC	2 cut(s)	80, 186
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	5 cut(s)	155, 204, 352, 418, 688
BccI	CCATC	1 cut(s)	436
BceAI	ACGGC	2 cut(s)	97, 131
BciT130I	CCWGG	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	702
BfoI	RGCGCY	1 cut(s)	198
BisI	GCNGC	7 cut(s)	56, 144, 193, 366, 407, 654, 702
BlsI	GCNGC	7 cut(s)	57, 145, 194, 367, 408, 655, 703
Bme1390I	CCNGG	2 cut(s)	75, 466
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	5 cut(s)	62, 76, 77, 455, 740
BmiI	GGNNCC	3 cut(s)	78, 79, 547
BmrFI	CCNGG	2 cut(s)	75, 466
BmsI	GCATC	2 cut(s)	333, 451
BpiI	GAAGAC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
BpmI	CTGGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	309
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 172, 555
Bse1I	ACTGG	2 cut(s)	263, 728
Bse3DI	GCAATG	1 cut(s)	620
BseBI	CCWGG	1 cut(s)	466
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	309
BseLI	CCNNNNNNNGG	3 cut(s)	59, 172, 555
BseMI	GCAATG	1 cut(s)	620
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	2 cut(s)	263, 728
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	5 cut(s)	155, 204, 352, 418, 688
BseYI	CCCAGC	1 cut(s)	714
Bsh1236I	CGCG	1 cut(s)	288
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	4 cut(s)	73, 78, 456, 741
BshVI	ATCGAT	1 cut(s)	120
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	3 cut(s)	59, 172, 555
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	731
BsnI	GGCC	4 cut(s)	73, 78, 456, 741
Bsp120I	GGGCCC	1 cut(s)	76
Bsp1286I	GDGCHC	2 cut(s)	80, 186
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	7 cut(s)	21, 53, 56, 207, 286, 338, 654
BspANI	GGCC	4 cut(s)	73, 78, 456, 741
BspCNI	CTCAG	1 cut(s)	406
BspDI	ATCGAT	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	3 cut(s)	78, 79, 547
BspMAI	CTGCAG	1 cut(s)	706
BspQI	GCTCTTC	2 cut(s)	174, 387
BsrDI	GCAATG	1 cut(s)	620
BsrI	ACTGG	2 cut(s)	263, 728
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	96
BssNI	GRCGYC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	1 cut(s)	550
Bst6I	CTCTTC	3 cut(s)	174, 344, 387
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	3 cut(s)	25, 139, 207
BstDEI	CTNAG	1 cut(s)	393
BstDSI	CCRYGG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	3 cut(s)	143, 197, 613
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	96
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 608, 659
BstNI	CCWGG	1 cut(s)	466
BstNSI	RCATGY	1 cut(s)	660
BstSCI	CCNGG	2 cut(s)	73, 464
BstSFI	CTRYAG	1 cut(s)	702
BstSLI	GKGCMC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	5 cut(s)	155, 204, 352, 418, 688
BstV2I	GAAGAC	1 cut(s)	132
Bsu15I	ATCGAT	1 cut(s)	120
BsuRI	GGCC	4 cut(s)	73, 78, 456, 741
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	3 cut(s)	401, 582, 735
Cac8I	GCNNGC	3 cut(s)	25, 139, 207
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	3 cut(s)	143, 197, 613
Cfr13I	GGNCC	5 cut(s)	62, 76, 77, 455, 740
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	3 cut(s)	115, 280, 475
CviAII	CATG	3 cut(s)	169, 524, 657
CviQI	GTAC	3 cut(s)	115, 280, 475
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	3 cut(s)	174, 344, 387
EarI	CTCTTC	3 cut(s)	174, 344, 387
EciI	GGCGGA	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	184
Eco24I	GRGCYC	2 cut(s)	80, 186
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	464
EcoT38I	GRGCYC	2 cut(s)	80, 186
FaeI	CATG	3 cut(s)	172, 527, 660
FaiI	YATR	9 cut(s)	170, 453, 525, 589, 591, 641, 658, 678, 680
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	3 cut(s)	168, 523, 656
FauI	CCCGC	1 cut(s)	214
FauNDI	CATATG	1 cut(s)	589
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	7 cut(s)	56, 144, 193, 366, 407, 654, 702
FriOI	GRGCYC	2 cut(s)	80, 186
Fsp4HI	GCNGC	7 cut(s)	56, 144, 193, 366, 407, 654, 702
FspBI	CTAG	1 cut(s)	273
FspI	TGCGCA	1 cut(s)	612
GlaI	GCGC	3 cut(s)	142, 196, 612
GluI	GCNGC	7 cut(s)	56, 144, 193, 366, 407, 654, 702
GsaI	CCCAGC	1 cut(s)	718
GsuI	CTGGAG	1 cut(s)	310
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	4 cut(s)	73, 78, 456, 741
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	3 cut(s)	143, 197, 613
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	172, 527, 660
Hin6I	GCGC	3 cut(s)	141, 195, 611
HinP1I	GCGC	3 cut(s)	141, 195, 611
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	469, 553
HpaII	CCGG	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	387, 633, 754
Hpy188III	TCNNGA	7 cut(s)	151, 253, 317, 327, 504, 524, 557
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	3 cut(s)	70, 107, 192
HpyAV	CCTTC	1 cut(s)	613
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4V	TGCA	4 cut(s)	490, 511, 587, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 608, 659
HpyF3I	CTNAG	1 cut(s)	393
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	172, 527, 660
HspAI	GCGC	3 cut(s)	141, 195, 611
Kzo9I	GATC	1 cut(s)	96
LguI	GCTCTTC	2 cut(s)	174, 387
LmnI	GCTCC	3 cut(s)	55, 189, 436
Lsp1109I	GCAGC	5 cut(s)	155, 204, 352, 418, 688
LweI	GCATC	2 cut(s)	333, 451
MaeI	CTAG	1 cut(s)	273
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	4 cut(s)	137, 191, 361, 374
MhlI	GDGCHC	2 cut(s)	80, 186
MluCI	AATT	6 cut(s)	247, 430, 515, 645, 666, 673
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	9 cut(s)	25, 151, 169, 176, 227, 240, 315, 345, 704
MseI	TTAA	5 cut(s)	38, 83, 518, 597, 722
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	75, 466
MvaI	CCWGG	1 cut(s)	466
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	143, 608, 659
NciI	CCSGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	3 cut(s)	172, 527, 660
NlaIV	GGNNCC	3 cut(s)	78, 79, 547
NmeAIII	GCCGAG	1 cut(s)	118
NsbI	TGCGCA	1 cut(s)	612
NspI	RCATGY	1 cut(s)	660
PagI	TCATGA	1 cut(s)	523
PciSI	GCTCTTC	2 cut(s)	174, 387
PfeI	GAWTC	2 cut(s)	469, 553
PkrI	GCNGC	7 cut(s)	57, 145, 194, 367, 408, 655, 703
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	464
PspFI	CCCAGC	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	3 cut(s)	78, 79, 547
PspOMI	GGGCCC	1 cut(s)	76
PspPI	GGNCC	5 cut(s)	62, 76, 77, 455, 740
PstI	CTGCAG	1 cut(s)	706
RsaI	GTAC	3 cut(s)	116, 281, 476
RsaNI	GTAC	3 cut(s)	115, 280, 475
SacI	GAGCTC	1 cut(s)	186
SalI	GTCGAC	1 cut(s)	161
SapI	GCTCTTC	2 cut(s)	174, 387
SaqAI	TTAA	5 cut(s)	38, 83, 518, 597, 722
SatI	GCNGC	7 cut(s)	56, 144, 193, 366, 407, 654, 702
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	5 cut(s)	62, 76, 77, 455, 740
ScrFI	CCNGG	2 cut(s)	75, 466
SduI	GDGCHC	2 cut(s)	80, 186
SfaNI	GCATC	2 cut(s)	333, 451
SfcI	CTRYAG	1 cut(s)	702
SinI	GGWCC	1 cut(s)	62
Sse9I	AATT	6 cut(s)	247, 430, 515, 645, 666, 673
SsiI	CCGC	7 cut(s)	21, 53, 56, 207, 286, 338, 654
SspMI	CTAG	1 cut(s)	273
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	73, 464
TaaI	ACNGT	1 cut(s)	550
TaqI	TCGA	4 cut(s)	102, 120, 162, 503
TasI	AATT	6 cut(s)	247, 430, 515, 645, 666, 673
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	2 cut(s)	58, 656
TfiI	GAWTC	2 cut(s)	469, 553
Tru1I	TTAA	5 cut(s)	38, 83, 518, 597, 722
Tru9I	TTAA	5 cut(s)	38, 83, 518, 597, 722
TscAI	CASTG	3 cut(s)	401, 589, 735
TseI	GCWGC	5 cut(s)	143, 192, 365, 406, 701
TspDTI	ATGAA	4 cut(s)	138, 375, 540, 699
TspGWI	ACGGA	2 cut(s)	54, 176
TspRI	CASTG	3 cut(s)	401, 589, 735
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	2 cut(s)	430, 645
XceI	RCATGY	1 cut(s)	660
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.