Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008097

Physical Location & Seq

Genomic Coordinates Reverse (-)

17571308 .. 17573657

Gene Structure 2350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G229800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCGACCAACAGCAACAGTGACATCTTAATGCTAGAAGCTCCACCACCGCAAGGTCCAGCATGGCCAGGACCTTTAACCAACGCCGAAACCATCGACGCCTTGCCGTACATCGACGACGACTACGCCAACCCCGACGTCAAAAGAGAGGTCGACCGCATGGTGGAGGAGGAGTTGCGACGCAGCGCAAAAAAGCCCGCCGATTTCCTCAAAGACTTGCCTCCACTTCCCAAGCCCAATTTCCAGAATCATCCGATGTTAGCTAGAGAGTACGACCGCGTGAGAGCTTCCAGGCCTCCGGCGGTTATTGATTTTTCCAGGGACAAAGTAGAGACGCCGCCTTTGAATAAAATGAATGATGAAACTGCTTGGAGACTTGCTCTTCAGAAAGCTCAGTGCTCTTTGCAGCACCAAGTCGTCAGGTTAGAGAATTTGGAGCTTATTGACAAATATGGTCCTGACGCCTGGATTCAGAACAACAATCGATTGCAATTGGTTTTTTCAAGAATGCAGAAATTAGCTCAGGAACAATTTCAAAAGATTGAAACAGTGAATCGTGAAAGGAAATATCACCAGCAAAACACTGCATATGAGCTTAATGCTCTGTCTGCCCAATGGAAGGAGCTGTGTCAGAAGAATATAGAAATCCATGCTGCATGTGTTAAGCTTGAAAGTCATCTGGATGAATTGAGGAGGGAAGCGGCAGAGAAGGGCTGGAACTTGGAAGCCAATGCAGAAAATGGTTCTCTGTTGAATTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000974 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005730 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009987 GO:0010204 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032991 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070013 GO:0071011 GO:0071013 GO:0080134 GO:0098542 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

BCAS2

Protein Analysis

255

Amino Acids

29.27

Weight (kDa)

5.43

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18165
fragaria_vesca	FvH4_5g17030 FvH4_5g17030 FvH4_5g17030 FvH4_5g17030
malus_domestica	MD00G1160500.v1.1 MD14G1233600.v1.1
prunus_persica	Prupe.5G229800_v2.0.a1
pyrus_communis	pycom14g19460
rosa_chinensis	RchiOBHm_Chr7g0178821
rosa_laevigata	RLG00000005412 RLG00000032628
rosa_multiflora	Rmu_co8249681.1_g000001 Rmu_sc0015029.1_g000006 Rmu_sc0025325.1_g000005
rosa_roxburghii	Rroxscaffold_3G00274550
rosa_rugosa	Rorug06G0420000 Rorug06G0420100
rosa_samantha	Rh1BG107100 Rh7AG019300 Rh7BG018800 Rh7CG019400 Rh7DG019200
rosa_wichuraiana	Rw7G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	279
AciI	CCGC	7 cut(s)	50, 157, 198, 277, 302, 338, 701
AcoI	YGGCCR	1 cut(s)	65
AcsI	RAATTY	2 cut(s)	430, 754
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	4 cut(s)	99, 138, 335, 462
AfaI	GTAC	2 cut(s)	110, 272
AfiI	CCNNNNNNNGG	3 cut(s)	53, 163, 619
AgsI	TTSAA	6 cut(s)	346, 504, 536, 545, 671, 754
AjnI	CCWGG	4 cut(s)	67, 290, 317, 464
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	9 cut(s)	41, 263, 287, 392, 439, 521, 595, 625, 667
AluI	AGCT	9 cut(s)	41, 263, 287, 392, 439, 521, 595, 625, 667
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	2 cut(s)	326, 367
AoxI	GGCC	2 cut(s)	65, 293
ApeKI	GCWGC	3 cut(s)	183, 406, 653
ApoI	RAATTY	2 cut(s)	430, 754
ArsI	GACNNNNNNTTYG	4 cut(s)	135, 167, 325, 357
Asp700I	GAANNNNTTC	1 cut(s)	531
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	3 cut(s)	56, 71, 455
AsuHPI	GGTGA	1 cut(s)	563
AvaII	GGWCC	3 cut(s)	56, 71, 455
BalI	TGGCCA	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	3 cut(s)	195, 418, 640
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	4 cut(s)	69, 292, 319, 466
BcoDI	GTCTC	2 cut(s)	326, 367
BfaI	CTAG	2 cut(s)	35, 264
BisI	GCNGC	5 cut(s)	184, 338, 407, 654, 702
BlsI	GCNGC	5 cut(s)	185, 339, 408, 655, 703
Bme1390I	CCNGG	4 cut(s)	69, 292, 319, 466
Bme18I	GGWCC	3 cut(s)	56, 71, 455
BmgT120I	GGNCC	3 cut(s)	56, 71, 455
BmrFI	CCNGG	4 cut(s)	69, 292, 319, 466
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
Bpu10I	CCTNAGC	1 cut(s)	522
Bsa29I	ATCGAT	1 cut(s)	484
BsaHI	GRCGYC	4 cut(s)	99, 138, 335, 462
BsaJI	CCNNGG	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 163, 619
BseBI	CCWGG	4 cut(s)	69, 292, 319, 466
BseCI	ATCGAT	1 cut(s)	484
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	250, 688
BseLI	CCNNNNNNNGG	3 cut(s)	53, 163, 619
BseMII	CTCAG	2 cut(s)	407, 536
BseRI	GAGGAG	3 cut(s)	182, 185, 706
BseXI	GCAGC	3 cut(s)	195, 418, 640
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	2 cut(s)	157, 277
BshFI	GGCC	2 cut(s)	67, 295
BshVI	ATCGAT	1 cut(s)	484
BsiEI	CGRYCG	2 cut(s)	157, 277
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	3 cut(s)	53, 163, 619
BsmAI	GTCTC	2 cut(s)	326, 367
BsmBI	CGTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	2 cut(s)	67, 295
Bsp1286I	GDGCHC	1 cut(s)	401
BspACI	CCGC	7 cut(s)	50, 157, 198, 277, 302, 338, 701
BspANI	GGCC	2 cut(s)	67, 295
BspCNI	CTCAG	2 cut(s)	406, 535
BspDI	ATCGAT	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	279
BspQI	GCTCTTC	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	318
BssNI	GRCGYC	4 cut(s)	99, 138, 335, 462
Bst2UI	CCWGG	4 cut(s)	69, 292, 319, 466
Bst4CI	ACNGT	2 cut(s)	20, 550
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	4 cut(s)	99, 138, 335, 462
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	2 cut(s)	393, 522
BstF5I	GGATG	2 cut(s)	250, 688
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	188
BstMAI	GTCTC	2 cut(s)	326, 367
BstMCI	CGRYCG	2 cut(s)	157, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	608
BstNI	CCWGG	4 cut(s)	69, 292, 319, 466
BstNSI	RCATGY	1 cut(s)	660
BstSCI	CCNGG	4 cut(s)	67, 290, 317, 464
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	3 cut(s)	195, 418, 640
Bsu15I	ATCGAT	1 cut(s)	484
BsuRI	GGCC	2 cut(s)	67, 295
BsuTUI	ATCGAT	1 cut(s)	484
BtsCI	GGATG	2 cut(s)	250, 688
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	4 cut(s)	25, 401, 555, 582
Cac8I	GCNNGC	1 cut(s)	198
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	3 cut(s)	56, 71, 455
ClaI	ATCGAT	1 cut(s)	484
CseI	GACGC	4 cut(s)	107, 189, 343, 470
Csp6I	GTAC	2 cut(s)	109, 271
CviAII	CATG	4 cut(s)	63, 160, 650, 657
CviQI	GTAC	2 cut(s)	109, 271
DdeI	CTNAG	2 cut(s)	393, 522
EaeI	YGGCCR	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco147I	AGGCCT	1 cut(s)	295
Eco47I	GGWCC	3 cut(s)	56, 71, 455
Eco57I	CTGAAG	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	754
EcoRII	CCWGG	4 cut(s)	67, 290, 317, 464
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	4 cut(s)	66, 163, 653, 660
FaiI	YATR	8 cut(s)	64, 161, 453, 589, 591, 641, 651, 658
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	4 cut(s)	62, 159, 649, 656
FauI	CCCGC	1 cut(s)	205
FauNDI	CATATG	1 cut(s)	589
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	5 cut(s)	184, 338, 407, 654, 702
FokI	GGATG	2 cut(s)	237, 695
Fsp4HI	GCNGC	5 cut(s)	184, 338, 407, 654, 702
FspBI	CTAG	2 cut(s)	35, 264
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	5 cut(s)	184, 338, 407, 654, 702
HaeIII	GGCC	2 cut(s)	67, 295
HapII	CCGG	1 cut(s)	299
HgaI	GACGC	4 cut(s)	107, 189, 343, 470
HhaI	GCGC	1 cut(s)	188
Hin1I	GRCGYC	4 cut(s)	99, 138, 335, 462
Hin1II	CATG	4 cut(s)	66, 163, 653, 660
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	3 cut(s)	247, 469, 553
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	5 cut(s)	255, 387, 474, 633, 760
Hpy188III	TCNNGA	6 cut(s)	244, 458, 504, 524, 557, 680
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	5 cut(s)	101, 119, 122, 140, 183
HpyAV	CCTTC	2 cut(s)	613, 703
HpyCH4III	ACNGT	2 cut(s)	20, 550
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	6 cut(s)	406, 490, 511, 587, 656, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	608
HpyF3I	CTNAG	2 cut(s)	393, 522
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	4 cut(s)	99, 138, 335, 462
Hsp92II	CATG	4 cut(s)	66, 163, 653, 660
HspAI	GCGC	1 cut(s)	186
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	3 cut(s)	46, 436, 622
Lsp1109I	GCAGC	3 cut(s)	195, 418, 640
MaeI	CTAG	2 cut(s)	35, 264
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	20
MboII	GAAGA	2 cut(s)	374, 646
MfeI	CAATTG	1 cut(s)	491
MhlI	GDGCHC	1 cut(s)	401
MlsI	TGGCCA	1 cut(s)	67
MluCI	AATT	7 cut(s)	238, 430, 491, 515, 530, 686, 754
MluNI	TGGCCA	1 cut(s)	67
MnlI	CCTC	8 cut(s)	142, 160, 163, 218, 231, 306, 684, 687
Mox20I	TGGCCA	1 cut(s)	67
MroXI	GAANNNNTTC	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	67
MseI	TTAA	4 cut(s)	29, 77, 597, 663
MslI	CAYNNNNRTG	2 cut(s)	29, 681
Msp20I	TGGCCA	1 cut(s)	67
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	4 cut(s)	69, 292, 319, 466
MunI	CAATTG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	513
MvaI	CCWGG	4 cut(s)	69, 292, 319, 466
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	608
NdeI	CATATG	1 cut(s)	589
NlaIII	CATG	4 cut(s)	66, 163, 653, 660
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	1 cut(s)	660
PceI	AGGCCT	1 cut(s)	295
PciSI	GCTCTTC	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	3 cut(s)	247, 469, 553
PkrI	GCNGC	5 cut(s)	185, 339, 408, 655, 703
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	4 cut(s)	67, 290, 317, 464
PspGI	CCWGG	4 cut(s)	67, 290, 317, 464
PspPI	GGNCC	3 cut(s)	56, 71, 455
PspPPI	RGGWCCY	1 cut(s)	71
RsaI	GTAC	2 cut(s)	110, 272
RsaNI	GTAC	2 cut(s)	109, 271
RseI	CAYNNNNRTG	2 cut(s)	29, 681
SalI	GTCGAC	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	4 cut(s)	29, 77, 597, 663
SatI	GCNGC	5 cut(s)	184, 338, 407, 654, 702
Sau96I	GGNCC	3 cut(s)	56, 71, 455
ScrFI	CCNGG	4 cut(s)	69, 292, 319, 466
SduI	GDGCHC	1 cut(s)	401
SinI	GGWCC	3 cut(s)	56, 71, 455
SmiMI	CAYNNNNRTG	2 cut(s)	29, 681
Sse9I	AATT	7 cut(s)	238, 430, 491, 515, 530, 686, 754
SseBI	AGGCCT	1 cut(s)	295
SsiI	CCGC	7 cut(s)	50, 157, 198, 277, 302, 338, 701
SspMI	CTAG	2 cut(s)	35, 264
StuI	AGGCCT	1 cut(s)	295
StyD4I	CCNGG	4 cut(s)	67, 290, 317, 464
TaaI	ACNGT	2 cut(s)	20, 550
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	4 cut(s)	96, 114, 153, 484
TasI	AATT	7 cut(s)	238, 430, 491, 515, 530, 686, 754
TauI	GCSGC	2 cut(s)	340, 704
TfiI	GAWTC	3 cut(s)	247, 469, 553
Tru1I	TTAA	4 cut(s)	29, 77, 597, 663
Tru9I	TTAA	4 cut(s)	29, 77, 597, 663
TscAI	CASTG	4 cut(s)	25, 401, 555, 589
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	183, 406, 653
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	368, 375, 699
TspRI	CASTG	4 cut(s)	25, 401, 555, 589
VpaK11BI	GGWCC	3 cut(s)	56, 71, 455
XapI	RAATTY	2 cut(s)	430, 754
XceI	RCATGY	1 cut(s)	660
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	2 cut(s)	35, 264
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.