Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008501

Physical Location & Seq

Genomic Coordinates Forward (+)

6383289 .. 6385815

Gene Structure 2527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGAACAACAACATTTTCAGTACTACTACCACCATCAATGACGACTACATGTTATTCCCTTATAATGACCATTATTCCTCACAACCATTGCTCCCTTTTAGCCCTTCTTCTTCCATTAACGACATCTTGATTCACTCCACCTCTAACACATCAAACAATCATCTTGACCATCATCATCAATTCCAACAACCTTCTCCTTTTTCTCACTTCGAATTTGCCCCGGACTGCGCCCTCCTCACCTCTTTCCACCCAGAAAACAATGGCCATGATGATAACCAAACCATCCCAAACGACAATCATCATCCATCACTTCACTTTCCCTTGAACAACACCATTGTAGAACAACCCACTGAGCCCTCGGAAACTATAAACCTTATAGAAGATTCCCAGAGAATCTCAACTTCTCAAGACCCAAAAATGAAAAAAGCCAAGAAACCCAGCAGAACGGACAGGCACAGCAAGATCAAAACGGCCAAAGGGACACGAGATCGTAGGATGAGACTCTCGCTAGATGTCGCCAAAGAGTTGTTTGGCTTACAAGACATGCTTGGATTTGACAAAGCCAGCAAAACCGTTGAATGGTTGCTTACACAAGCAAAACCTGAGATCATAAAGATCGCGACAACCCTTTCTCACCATGGCTGCTTCAGCAGCGGCGATGAGTCTCATATCCGACCGGTGTTAGGATCCATGGACACATCTTCTGATCTATGTGAACTTGCATCCATGTGGACGGTCGACGATAGAGGCAGCAATACTAACACGACCGAAACAAGAGGAAACAAGGTCGATGGGAGATCGATGAGAGGGAAGAGAAAGAGGCCAGAACCGCGAACGCCCATTTTAAAGAAGTTGTCCAAGGAGGAGAGAGCGAAAGCTAGAGAAAGAGCAAAGGGTAGAACAATGGAGAAAATGATGATGAAGATGAAAGGAAGATCACAATTAGTGAAAGTTGTGGAAGAAGACGCTCATGATCATGGTGAGATAATAAAGAATAATAATAGAAGCCAAGTGAATCGGAGTTCTTTTGAGATGACACACTGCGAAGACAAGATCGAAGAACTTTGCAAGAACGATCGTTTTGCAGTTTGCAACGAATTTATCATGAATAAGAAAGATCACATTTCAAATGAATCTTATGACTTAGTCAACTACAAACCGAACTCATCATTCCCAGTGATTAACCACCATCGCAGCCAAGGAGCAGCTAATTCCATTGAGCAGCATCAGTTTACGGATCTTCATTACTCCTTCGGCGCGAAACCAAGAGACCTCATGCACAACTATCAAAACATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905393 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

433

Amino Acids

49.67

Weight (kDa)

7.4

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	147 - 308	9.1e-46	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18550 AT3G18550 AT3G18550 AT3G18550
fragaria_vesca	FvH4_5g12710
malus_domestica	MD06G1211100.v1.1 MD14G1221800.v1.1
prunus_persica	Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1
pyrus_communis	pycom06g18840 pycom14g18340
rosa_chinensis	RchiOBHm_Chr7g0184601
rosa_laevigata	RLG00000004965
rosa_multiflora	Rmu_co8093794.1_g000001 Rmu_ssc0000289.1_g000032 Rmu_ssc0000289.1_g000033
rosa_roxburghii	Rroxscaffold_3G00269490
rosa_samantha	Rh7AG079000 Rh7BG068300 Rh7CG069100 Rh7DG068400
rosa_wichuraiana	Rw7G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	738
AccII	CGCG	3 cut(s)	620, 832, 1259
AciI	CCGC	2 cut(s)	654, 830
AclWI	GGATC	3 cut(s)	681, 694, 1245
AcoI	YGGCCR	2 cut(s)	262, 471
AcsI	RAATTY	2 cut(s)	212, 1097
AcuI	CTGAAG	1 cut(s)	631
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	2 cut(s)	579, 683
AflIII	ACRYGT	2 cut(s)	48, 1293
AgeI	ACCGGT	1 cut(s)	676
AgsI	TTSAA	3 cut(s)	325, 578, 1128
AluBI	AGCT	2 cut(s)	878, 1208
AluI	AGCT	2 cut(s)	878, 1208
Alw26I	GTCTC	3 cut(s)	493, 669, 1263
AlwI	GGATC	3 cut(s)	681, 694, 1245
AoxI	GGCC	3 cut(s)	262, 471, 821
ApeKI	GCWGC	6 cut(s)	642, 651, 750, 1194, 1205, 1222
ApoI	RAATTY	2 cut(s)	212, 1097
AsiGI	ACCGGT	1 cut(s)	676
AspLEI	GCGC	2 cut(s)	230, 1259
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	229, 626, 992
AsuII	TTCGAA	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	686
BanII	GRGCYC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	483
BbsI	GAAGAC	2 cut(s)	969, 1053
BbvI	GCAGC	6 cut(s)	629, 663, 762, 1206, 1217, 1234
BccI	CCATC	6 cut(s)	41, 177, 290, 313, 785, 1197
BceAI	ACGGC	1 cut(s)	486
BcgI	CGANNNNNNTGC	2 cut(s)	1064, 1098
BclI	TGATCA	1 cut(s)	973
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	3 cut(s)	493, 669, 1263
BfaI	CTAG	2 cut(s)	509, 879
BisI	GCNGC	7 cut(s)	643, 652, 655, 751, 1195, 1206, 1223
BlsI	GCNGC	7 cut(s)	644, 653, 656, 752, 1196, 1207, 1224
BmcAI	AGTACT	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	688
BmrFI	CCNGG	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	1169
BmsI	GCATC	2 cut(s)	731, 1234
BmuI	ACTGGG	1 cut(s)	1169
BpiI	GAAGAC	2 cut(s)	969, 1053
Bpu14I	TTCGAA	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	800
BsaI	GGTCTC	1 cut(s)	1263
BsaJI	CCNNGG	6 cut(s)	219, 357, 637, 690, 858, 1198
BsaWI	WCCGGW	1 cut(s)	676
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	2 cut(s)	579, 683
Bse118I	RCCGGY	1 cut(s)	676
Bse1I	ACTGG	1 cut(s)	1175
Bse3DI	GCAATG	1 cut(s)	86
BseCI	ATCGAT	1 cut(s)	800
BseDI	CCNNGG	6 cut(s)	219, 357, 637, 690, 858, 1198
BseGI	GGATG	4 cut(s)	282, 301, 501, 722
BseLI	CCNNNNNNNGG	2 cut(s)	579, 683
BseMI	GCAATG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	342, 594
BseNI	ACTGG	1 cut(s)	1175
BseRI	GAGGAG	2 cut(s)	224, 878
BseXI	GCAGC	6 cut(s)	629, 663, 762, 1206, 1217, 1234
BseYI	CCCAGC	1 cut(s)	437
Bsh1236I	CGCG	3 cut(s)	620, 832, 1259
Bsh1285I	CGRYCG	4 cut(s)	677, 738, 768, 1078
BshFI	GGCC	3 cut(s)	264, 473, 823
BshTI	ACCGGT	1 cut(s)	676
BshVI	ATCGAT	1 cut(s)	800
BsiEI	CGRYCG	4 cut(s)	677, 738, 768, 1078
BsiSI	CCGG	2 cut(s)	221, 677
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	2 cut(s)	579, 683
BsmAI	GTCTC	3 cut(s)	493, 669, 1263
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	3 cut(s)	264, 473, 823
Bso31I	GGTCTC	1 cut(s)	1263
Bsp119I	TTCGAA	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp19I	CCATGG	2 cut(s)	637, 690
Bsp68I	TCGCGA	1 cut(s)	620
BspACI	CCGC	2 cut(s)	654, 830
BspANI	GGCC	3 cut(s)	264, 473, 823
BspCNI	CTCAG	2 cut(s)	343, 595
BspDI	ATCGAT	1 cut(s)	800
BspFNI	CGCG	3 cut(s)	620, 832, 1259
BspHI	TCATGA	2 cut(s)	970, 1104
BspLI	GGNNCC	1 cut(s)	688
BspPI	GGATC	3 cut(s)	681, 694, 1245
BspT104I	TTCGAA	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	1263
BsrDI	GCAATG	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	676
BsrI	ACTGG	1 cut(s)	1175
BssAI	RCCGGY	1 cut(s)	676
BssECI	CCNNGG	6 cut(s)	219, 357, 637, 690, 858, 1198
BssSI	CACGAG	1 cut(s)	483
BssT1I	CCWWGG	4 cut(s)	637, 690, 858, 1198
Bst2BI	CACGAG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	574, 736
Bst6I	CTCTTC	1 cut(s)	806
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	3 cut(s)	351, 603, 1144
BstDSI	CCRYGG	2 cut(s)	637, 690
BstF5I	GGATG	4 cut(s)	282, 301, 501, 722
BstFNI	CGCG	3 cut(s)	620, 832, 1259
BstHHI	GCGC	2 cut(s)	230, 1259
BstMAI	GTCTC	3 cut(s)	493, 669, 1263
BstMCI	CGRYCG	4 cut(s)	677, 738, 768, 1078
BstMWI	GCNNNNNNNGC	3 cut(s)	648, 651, 829
BstNSI	RCATGY	3 cut(s)	52, 547, 1297
BstSCI	CCNGG	1 cut(s)	219
BstUI	CGCG	3 cut(s)	620, 832, 1259
BstV1I	GCAGC	6 cut(s)	629, 663, 762, 1206, 1217, 1234
BstV2I	GAAGAC	2 cut(s)	969, 1053
BstX2I	RGATCY	2 cut(s)	686, 1237
BstYI	RGATCY	2 cut(s)	686, 1237
Bsu15I	ATCGAT	1 cut(s)	800
BsuRI	GGCC	3 cut(s)	264, 473, 823
BsuTUI	ATCGAT	1 cut(s)	800
BtgI	CCRYGG	2 cut(s)	637, 690
BtgZI	GCGATG	2 cut(s)	672, 1175
BtsCI	GGATG	4 cut(s)	282, 301, 501, 722
BtsI	GCAGTG	1 cut(s)	1039
BtsIMutI	CAGTG	3 cut(s)	348, 1039, 1182
BtuMI	TCGCGA	1 cut(s)	620
Cac8I	GCNNGC	1 cut(s)	565
CciI	TCATGA	2 cut(s)	970, 1104
CfoI	GCGC	2 cut(s)	230, 1259
Cfr10I	RCCGGY	1 cut(s)	676
ClaI	ATCGAT	1 cut(s)	800
CseI	GACGC	1 cut(s)	974
Csp6I	GTAC	1 cut(s)	21
CspAI	ACCGGT	1 cut(s)	676
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	3 cut(s)	351, 603, 1144
DraI	TTTAAA	1 cut(s)	846
EaeI	YGGCCR	2 cut(s)	262, 471
Eam1104I	CTCTTC	1 cut(s)	806
EarI	CTCTTC	1 cut(s)	806
Eco130I	CCWWGG	4 cut(s)	637, 690, 858, 1198
Eco24I	GRGCYC	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	1263
Eco57I	CTGAAG	1 cut(s)	631
EcoT14I	CCWWGG	4 cut(s)	637, 690, 858, 1198
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	4 cut(s)	637, 690, 858, 1198
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	973
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	7 cut(s)	643, 652, 655, 751, 1195, 1206, 1223
FokI	GGATG	4 cut(s)	269, 288, 508, 709
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	7 cut(s)	643, 652, 655, 751, 1195, 1206, 1223
FspBI	CTAG	2 cut(s)	509, 879
GlaI	GCGC	2 cut(s)	229, 1258
GluI	GCNGC	7 cut(s)	643, 652, 655, 751, 1195, 1206, 1223
GsaI	CCCAGC	1 cut(s)	441
HaeIII	GGCC	3 cut(s)	264, 473, 823
HapII	CCGG	2 cut(s)	221, 677
HgaI	GACGC	1 cut(s)	974
HhaI	GCGC	2 cut(s)	230, 1259
Hin6I	GCGC	2 cut(s)	228, 1257
HinP1I	GCGC	2 cut(s)	228, 1257
HincII	GTYRAC	2 cut(s)	739, 1150
HindII	GTYRAC	2 cut(s)	739, 1150
HinfI	GANTC	7 cut(s)	130, 383, 393, 501, 662, 1015, 1133
HpaII	CCGG	2 cut(s)	221, 677
HphI	GGTGA	3 cut(s)	229, 626, 992
Hpy166II	GTNNAC	5 cut(s)	716, 732, 739, 1150, 1233
Hpy188I	TCNGA	4 cut(s)	361, 674, 706, 1020
Hpy188III	TCNNGA	6 cut(s)	127, 164, 407, 619, 971, 1105
Hpy8I	GTNNAC	5 cut(s)	716, 732, 739, 1150, 1233
Hpy99I	CGWCG	1 cut(s)	743
HpyAV	CCTTC	3 cut(s)	114, 201, 1261
HpyCH4III	ACNGT	2 cut(s)	574, 736
HpyCH4V	TGCA	5 cut(s)	722, 1068, 1085, 1092, 1279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	648, 651, 829
HpyF3I	CTNAG	3 cut(s)	351, 603, 1144
HspAI	GCGC	2 cut(s)	228, 1257
Ksp22I	TGATCA	1 cut(s)	973
LmnI	GCTCC	2 cut(s)	96, 1202
Lsp1109I	GCAGC	6 cut(s)	629, 663, 762, 1206, 1217, 1234
LweI	GCATC	2 cut(s)	731, 1234
MaeI	CTAG	2 cut(s)	509, 879
MflI	RGATCY	2 cut(s)	686, 1237
MhlI	GDGCHC	1 cut(s)	357
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	5 cut(s)	179, 212, 941, 1097, 1210
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	2 cut(s)	495, 671
MmeI	TCCRAC	2 cut(s)	208, 697
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	3 cut(s)	117, 845, 1182
MslI	CAYNNNNRTG	2 cut(s)	727, 975
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	654
MspI	CCGG	2 cut(s)	221, 677
MspR9I	CCNGG	1 cut(s)	221
MvnI	CGCG	3 cut(s)	620, 832, 1259
MwoI	GCNNNNNNNGC	3 cut(s)	648, 651, 829
NciI	CCSGG	1 cut(s)	221
NcoI	CCATGG	2 cut(s)	637, 690
NlaIV	GGNNCC	1 cut(s)	688
NruI	TCGCGA	1 cut(s)	620
NspI	RCATGY	3 cut(s)	52, 547, 1297
NspV	TTCGAA	1 cut(s)	210
PagI	TCATGA	2 cut(s)	970, 1104
PciI	ACATGT	2 cut(s)	48, 1293
PfeI	GAWTC	5 cut(s)	130, 383, 393, 1015, 1133
PflFI	GACNNNGTC	1 cut(s)	1145
PinAI	ACCGGT	1 cut(s)	676
PkrI	GCNGC	7 cut(s)	644, 653, 656, 752, 1196, 1207, 1224
Ple19I	CGATCG	1 cut(s)	1078
PleI	GAGTC	2 cut(s)	495, 670
PpsI	GAGTC	2 cut(s)	495, 670
PscI	ACATGT	2 cut(s)	48, 1293
PsiI	TTATAA	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	688
PsuI	RGATCY	2 cut(s)	686, 1237
PsyI	GACNNNGTC	1 cut(s)	1145
PvuI	CGATCG	1 cut(s)	1078
RruI	TCGCGA	1 cut(s)	620
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	2 cut(s)	727, 975
SalI	GTCGAC	1 cut(s)	737
SaqAI	TTAA	3 cut(s)	117, 845, 1182
SatI	GCNGC	7 cut(s)	643, 652, 655, 751, 1195, 1206, 1223
ScaI	AGTACT	1 cut(s)	22
SchI	GAGTC	2 cut(s)	495, 671
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	9 cut(s)	143, 193, 242, 375, 604, 789, 880, 1210, 1275
SfaNI	GCATC	2 cut(s)	731, 1234
SfuI	TTCGAA	1 cut(s)	210
SmiMI	CAYNNNNRTG	2 cut(s)	727, 975
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	5 cut(s)	179, 212, 941, 1097, 1210
SsiI	CCGC	2 cut(s)	654, 830
SspMI	CTAG	2 cut(s)	509, 879
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	4 cut(s)	637, 690, 858, 1198
TaaI	ACNGT	2 cut(s)	574, 736
TaqI	TCGA	5 cut(s)	210, 738, 789, 800, 1056
TaqII	GACCGA	1 cut(s)	782
TasI	AATT	5 cut(s)	179, 212, 941, 1097, 1210
TatI	WGTACW	1 cut(s)	20
TauI	GCSGC	1 cut(s)	657
TfiI	GAWTC	5 cut(s)	130, 383, 393, 1015, 1133
Tru1I	TTAA	3 cut(s)	117, 845, 1182
Tru9I	TTAA	3 cut(s)	117, 845, 1182
TscAI	CASTG	3 cut(s)	355, 1046, 1182
TseI	GCWGC	6 cut(s)	642, 651, 750, 1194, 1205, 1222
TspDTI	ATGAA	7 cut(s)	17, 434, 935, 941, 1121, 1146, 1232
TspGWI	ACGGA	2 cut(s)	461, 1250
TspRI	CASTG	3 cut(s)	355, 1046, 1182
Tth111I	GACNNNGTC	1 cut(s)	1145
XapI	RAATTY	2 cut(s)	212, 1097
XceI	RCATGY	3 cut(s)	52, 547, 1297
XmiI	GTMKAC	1 cut(s)	738
XspI	CTAG	2 cut(s)	509, 879
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.