Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008501

Physical Location & Seq

Genomic Coordinates Forward (+)

64033645 .. 64035200

Gene Structure 1556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004965

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGTTTTCTTATAGCTCAAACGCTATTAGCACCGGTACTACTGGCAATTACTACGAACCTGCCGTGCCTTTTCCTCATGACCAATCCTTTTTGATCCACAGTAGGCCTTTTCTTAATTCTACTACCAATCCAAATTGCAATTCCGCTTCAGTTATTTCCAATTCCAAACAAGATCAAGATCTACAAGAAGACCCTCATCATCATATTCATCCTCCTTTGTCTTTCTTCTACTTCCCCTCTCCCTTTGAAGACGACGATGTTTTACTCCACCAACACCAACACCACCACCACCACCACCACCACCATGACCTGTCGTCGCTTCATGAAAATACCTTATTTGCCCATCATCATCATCAGACCGGTACTCCTCTCACTGCTACAATGGTGGAGGGGAATTCTAACAAAGATGATCAGGTGGTGATCGGTAAAGAAGGTGAGCAACAGCAACAACAACAACAACAGAAACAGATCCCGATGGCGAGAAGATCTTGCAAGAAGGACCGGCACAGCAAGATTAGCACCGCCCGAGGACTGAGGGACCGGAGAATGAGATTGTCCCTCGATGTTGCCAGAAAGTTCTTTGGTTTGCAAGACGTGCTTGGCTTTGACAAGGCCAGCAAGACGGTGGAGTGGTTGCTCAATCAGGCAGGAGCTGAAATCAAGAAAGTAAAAAGAGAAATGAACGATCAGAACGAAAACCAAAGCTCTAGCACTACTACCGCCGCAGGAGCAGGTGCCAGAGCCAGAACCACATCTTCCATATCCGAGTGTGAAGTCGTATCCGGTACAGATGAGGTCGCGACTGATGATATTATTGATAAGGTAAGCCGGACATCCTCTTCTTCTTGTGCCAAAAATCGGATCAAAAGGACTGTCAGGCAACCAAAGAAGAGTGCATTGTTTAACCCTCTTGCAAAGGCGTCGAGGGAAATGGCAAGAGCGAGAGCAAGAGAAAGAACTAGAGAAAAGATGGGGAGACAGTCAAAGCCATGTGGTGATGTTGATCAGGGAAAGAAGATGAAGCCGGACCTGAGCCAATTAAGTTCATGGAGTCCATTTGAAACCGGAGAAGAATCTGGAGCGACTCAAAGCCACAACAACAACATCAACAATCATTCTCCATTGGAAGCACTTGCTGAGGTTGAAGAGCCAATAAGCAGCTTCCAAGCATCTGCGACTACGGTAGTAGTTCATCGTCATATTCATCAAGACTTGATTGAAATTGATGGTCATGATGCTGCAGCTAACTTGGTGACAATGGGAAAGTGGAGCCCCTCTTCCACTTTCAATTCTCTTCAAAATACTTCTGGATCAATTTCACAAGAGCAACATCAGTTTGCAGACTTTCAATTCTATGGAAAACCATGGGAGGTCTACAACAGTAGTTCTCATAACCTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905393 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

468

Amino Acids

52.38

Weight (kDa)

6.89

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	164 - 325	4.2e-43	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18550 AT3G18550 AT3G18550 AT3G18550
fragaria_vesca	FvH4_5g12710
malus_domestica	MD06G1211100.v1.1 MD14G1221800.v1.1
prunus_persica	Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1
pyrus_communis	pycom06g18840 pycom14g18340
rosa_chinensis	RchiOBHm_Chr7g0184601
rosa_laevigata	RLG00000004965
rosa_multiflora	Rmu_co8093794.1_g000001 Rmu_ssc0000289.1_g000032 Rmu_ssc0000289.1_g000033
rosa_roxburghii	Rroxscaffold_3G00269490
rosa_samantha	Rh7AG079000 Rh7BG068300 Rh7CG069100 Rh7DG068400
rosa_wichuraiana	Rw7G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	722
Acc36I	ACCTGC	2 cut(s)	67, 722
AccB1I	GGYRCC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	1374
AccII	CGCG	1 cut(s)	800
AciI	CCGC	4 cut(s)	144, 522, 720, 723
AclWI	GGATC	4 cut(s)	88, 463, 869, 1318
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	920
AfaI	GTAC	3 cut(s)	37, 364, 787
AfiI	CCNNNNNNNGG	1 cut(s)	858
AgeI	ACCGGT	2 cut(s)	32, 359
AgsI	TTSAA	7 cut(s)	248, 1061, 1145, 1220, 1288, 1298, 1349
AhdI	GACNNNNNGTC	1 cut(s)	313
AjiI	CACGTC	1 cut(s)	595
AjuI	GAANNNNNNNTTGG	2 cut(s)	124, 156
AluBI	AGCT	5 cut(s)	15, 653, 705, 1161, 1244
AluI	AGCT	5 cut(s)	15, 653, 705, 1161, 1244
Alw26I	GTCTC	1 cut(s)	970
AlwI	GGATC	4 cut(s)	88, 463, 869, 1318
AlwNI	CAGNNNCTG	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	525
AoxI	GGCC	2 cut(s)	104, 612
ApeKI	GCWGC	3 cut(s)	1158, 1238, 1241
ApoI	RAATTY	1 cut(s)	394
ArsI	GACNNNNNNTTYG	2 cut(s)	858, 890
AsiGI	ACCGGT	2 cut(s)	32, 359
AspS9I	GGNCC	3 cut(s)	499, 538, 1027
AsuHPI	GGTGA	4 cut(s)	430, 446, 1007, 1264
AvaI	CYCGRG	1 cut(s)	525
AvaII	GGWCC	3 cut(s)	499, 538, 1027
BanI	GGYRCC	1 cut(s)	734
BanII	GRGCYC	1 cut(s)	1274
BbsI	GAAGAC	2 cut(s)	195, 255
BbvCI	CCTCAGC	1 cut(s)	1137
BbvI	GCAGC	3 cut(s)	1170, 1225, 1253
BccI	CCATC	4 cut(s)	351, 469, 964, 1220
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	903, 937
BciVI	GTATCC	1 cut(s)	790
BclI	TGATCA	2 cut(s)	409, 1003
BcoDI	GTCTC	1 cut(s)	970
BfaI	CTAG	2 cut(s)	708, 960
BfmI	CTRYAG	1 cut(s)	1239
BfuAI	ACCTGC	2 cut(s)	67, 722
BfuI	GTATCC	1 cut(s)	790
BglII	AGATCT	2 cut(s)	178, 485
BisI	GCNGC	4 cut(s)	723, 1159, 1239, 1242
BlsI	GCNGC	4 cut(s)	724, 1160, 1240, 1243
Bme18I	GGWCC	3 cut(s)	499, 538, 1027
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	525
BmgBI	CACGTC	1 cut(s)	595
BmgT120I	GGNCC	3 cut(s)	499, 538, 1027
BmiI	GGNNCC	3 cut(s)	539, 736, 1271
BmsI	GCATC	2 cut(s)	1178, 1225
BpiI	GAAGAC	2 cut(s)	195, 255
BpmI	CTGGAG	1 cut(s)	1098
Bpu10I	CCTNAGC	2 cut(s)	1031, 1137
BsaBI	GATNNNNATC	2 cut(s)	177, 1002
BsaHI	GRCGYC	1 cut(s)	920
BsaJI	CCNNGG	2 cut(s)	526, 1364
BsaWI	WCCGGW	5 cut(s)	32, 359, 540, 782, 1064
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	1 cut(s)	858
Bse118I	RCCGGY	3 cut(s)	32, 359, 501
Bse1I	ACTGG	1 cut(s)	46
Bse8I	GATNNNNATC	2 cut(s)	177, 1002
BseDI	CCNNGG	2 cut(s)	526, 1364
BseGI	GGATG	2 cut(s)	208, 833
BseJI	GATNNNNATC	2 cut(s)	177, 1002
BseLI	CCNNNNNNNGG	1 cut(s)	858
BseMII	CTCAG	3 cut(s)	524, 1022, 1128
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	3 cut(s)	1170, 1225, 1253
Bsh1236I	CGCG	1 cut(s)	800
BshFI	GGCC	2 cut(s)	106, 614
BshNI	GGYRCC	1 cut(s)	734
BshTI	ACCGGT	2 cut(s)	32, 359
BsiHKCI	CYCGRG	1 cut(s)	525
BsiSI	CCGG	8 cut(s)	33, 360, 502, 541, 783, 829, 1025, 1065
BslFI	GGGAC	2 cut(s)	541, 551
BslI	CCNNNNNNNGG	1 cut(s)	858
BsmAI	GTCTC	1 cut(s)	970
BsmFI	GGGAC	2 cut(s)	541, 551
BsnI	GGCC	2 cut(s)	106, 614
BsoBI	CYCGRG	1 cut(s)	525
Bsp1286I	GDGCHC	1 cut(s)	1274
Bsp19I	CCATGG	1 cut(s)	1364
Bsp68I	TCGCGA	1 cut(s)	800
BspACI	CCGC	4 cut(s)	144, 522, 720, 723
BspANI	GGCC	2 cut(s)	106, 614
BspCNI	CTCAG	3 cut(s)	525, 1023, 1129
BspFNI	CGCG	1 cut(s)	800
BspHI	TCATGA	3 cut(s)	76, 322, 1231
BspLI	GGNNCC	3 cut(s)	539, 736, 1271
BspMAI	CTGCAG	1 cut(s)	1243
BspMI	ACCTGC	2 cut(s)	67, 722
BspPI	GGATC	4 cut(s)	88, 463, 869, 1318
BspQI	GCTCTTC	1 cut(s)	1140
BspT107I	GGYRCC	1 cut(s)	734
BsrFI	RCCGGY	3 cut(s)	32, 359, 501
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	3 cut(s)	32, 359, 501
BssECI	CCNNGG	2 cut(s)	526, 1364
BssNI	GRCGYC	1 cut(s)	920
BssT1I	CCWWGG	1 cut(s)	1364
Bst4CI	ACNGT	6 cut(s)	101, 625, 874, 981, 1183, 1382
Bst6I	CTCTTC	5 cut(s)	844, 884, 1140, 1282, 1299
BstACI	GRCGYC	1 cut(s)	920
BstAPI	GCANNNNNTGC	1 cut(s)	595
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	3 cut(s)	533, 1031, 1137
BstDSI	CCRYGG	1 cut(s)	1364
BstF5I	GGATG	2 cut(s)	208, 833
BstFNI	CGCG	1 cut(s)	800
BstMAI	GTCTC	1 cut(s)	970
BstMWI	GCNNNNNNNGC	3 cut(s)	516, 595, 728
BstSFI	CTRYAG	1 cut(s)	1239
BstUI	CGCG	1 cut(s)	800
BstV1I	GCAGC	3 cut(s)	1170, 1225, 1253
BstV2I	GAAGAC	2 cut(s)	195, 255
BstX2I	RGATCY	3 cut(s)	178, 468, 485
BstYI	RGATCY	3 cut(s)	178, 468, 485
BsuI	GTATCC	1 cut(s)	790
BsuRI	GGCC	2 cut(s)	106, 614
BtgI	CCRYGG	1 cut(s)	1364
BtrI	CACGTC	1 cut(s)	595
BtsCI	GGATG	2 cut(s)	208, 833
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	372
BtuMI	TCGCGA	1 cut(s)	800
BveI	ACCTGC	2 cut(s)	67, 722
Cac8I	GCNNGC	1 cut(s)	616
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	3 cut(s)	76, 322, 1231
Cfr10I	RCCGGY	3 cut(s)	32, 359, 501
Cfr13I	GGNCC	3 cut(s)	499, 538, 1027
CseI	GACGC	1 cut(s)	909
Csp6I	GTAC	3 cut(s)	36, 363, 786
CspAI	ACCGGT	2 cut(s)	32, 359
CviAII	CATG	7 cut(s)	77, 305, 323, 990, 1047, 1232, 1365
CviQI	GTAC	3 cut(s)	36, 363, 786
DdeI	CTNAG	3 cut(s)	533, 1031, 1137
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1104I	CTCTTC	5 cut(s)	844, 884, 1140, 1282, 1299
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	5 cut(s)	844, 884, 1140, 1282, 1299
Eco130I	CCWWGG	1 cut(s)	1364
Eco147I	AGGCCT	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	1274
Eco47I	GGWCC	3 cut(s)	499, 538, 1027
Eco57I	CTGAAG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	525
EcoRI	GAATTC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	1364
EcoT38I	GRGCYC	1 cut(s)	1274
ErhI	CCWWGG	1 cut(s)	1364
FaeI	CATG	7 cut(s)	80, 308, 326, 993, 1050, 1235, 1368
FalI	AAGNNNNNCTT	2 cut(s)	582, 614
FaqI	GGGAC	2 cut(s)	541, 551
FatI	CATG	7 cut(s)	76, 304, 322, 989, 1046, 1231, 1364
FbaI	TGATCA	2 cut(s)	409, 1003
FblI	GTMKAC	1 cut(s)	1374
Fnu4HI	GCNGC	4 cut(s)	723, 1159, 1239, 1242
FokI	GGATG	2 cut(s)	195, 820
FriOI	GRGCYC	1 cut(s)	1274
Fsp4HI	GCNGC	4 cut(s)	723, 1159, 1239, 1242
FspBI	CTAG	2 cut(s)	708, 960
GluI	GCNGC	4 cut(s)	723, 1159, 1239, 1242
GsuI	CTGGAG	1 cut(s)	1098
HaeIII	GGCC	2 cut(s)	106, 614
HapII	CCGG	8 cut(s)	33, 360, 502, 541, 783, 829, 1025, 1065
HgaI	GACGC	1 cut(s)	909
Hin1I	GRCGYC	1 cut(s)	920
Hin1II	CATG	7 cut(s)	80, 308, 326, 993, 1050, 1235, 1368
HinfI	GANTC	3 cut(s)	1051, 1073, 1084
HpaII	CCGG	8 cut(s)	33, 360, 502, 541, 783, 829, 1025, 1065
HphI	GGTGA	4 cut(s)	430, 446, 1007, 1264
Hpy166II	GTNNAC	1 cut(s)	1375
Hpy188I	TCNGA	4 cut(s)	357, 690, 766, 861
Hpy8I	GTNNAC	1 cut(s)	1375
Hpy99I	CGWCG	3 cut(s)	257, 319, 925
HpyAV	CCTTC	2 cut(s)	425, 490
HpyCH4III	ACNGT	6 cut(s)	101, 625, 874, 981, 1183, 1382
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	7 cut(s)	138, 492, 589, 896, 914, 1241, 1340
HpyF10VI	GCNNNNNNNGC	3 cut(s)	516, 595, 728
HpyF3I	CTNAG	3 cut(s)	533, 1031, 1137
HpySE526I	ACGT	1 cut(s)	594
Hsp92I	GRCGYC	1 cut(s)	920
Hsp92II	CATG	7 cut(s)	80, 308, 326, 993, 1050, 1235, 1368
Ksp22I	TGATCA	2 cut(s)	409, 1003
LguI	GCTCTTC	1 cut(s)	1140
LmnI	GCTCC	4 cut(s)	650, 728, 1079, 1269
Lsp1109I	GCAGC	3 cut(s)	1170, 1225, 1253
LweI	GCATC	2 cut(s)	1178, 1225
MaeI	CTAG	2 cut(s)	708, 960
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	1 cut(s)	1252
MflI	RGATCY	3 cut(s)	178, 468, 485
MhlI	GDGCHC	1 cut(s)	1274
MlyI	GAGTC	2 cut(s)	1060, 1078
MseI	TTAA	4 cut(s)	114, 903, 1040, 1402
MslI	CAYNNNNRTG	1 cut(s)	303
MspI	CCGG	8 cut(s)	33, 360, 502, 541, 783, 829, 1025, 1065
MvnI	CGCG	1 cut(s)	800
MwoI	GCNNNNNNNGC	3 cut(s)	516, 595, 728
NcoI	CCATGG	1 cut(s)	1364
NlaIII	CATG	7 cut(s)	80, 308, 326, 993, 1050, 1235, 1368
NlaIV	GGNNCC	3 cut(s)	539, 736, 1271
NmuCI	GTSAC	1 cut(s)	1252
NruI	TCGCGA	1 cut(s)	800
PagI	TCATGA	3 cut(s)	76, 322, 1231
PaqCI	CACCTGC	1 cut(s)	722
PceI	AGGCCT	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	1140
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 690
PfeI	GAWTC	1 cut(s)	1073
PinAI	ACCGGT	2 cut(s)	32, 359
PkrI	GCNGC	4 cut(s)	724, 1160, 1240, 1243
PleI	GAGTC	2 cut(s)	1059, 1078
PpsI	GAGTC	2 cut(s)	1059, 1078
PspN4I	GGNNCC	3 cut(s)	539, 736, 1271
PspPI	GGNCC	3 cut(s)	499, 538, 1027
PstI	CTGCAG	1 cut(s)	1243
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	3 cut(s)	178, 468, 485
RruI	TCGCGA	1 cut(s)	800
RsaI	GTAC	3 cut(s)	37, 364, 787
RsaNI	GTAC	3 cut(s)	36, 363, 786
RseI	CAYNNNNRTG	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	1140
SaqAI	TTAA	4 cut(s)	114, 903, 1040, 1402
SatI	GCNGC	4 cut(s)	723, 1159, 1239, 1242
Sau96I	GGNCC	3 cut(s)	499, 538, 1027
SchI	GAGTC	2 cut(s)	1060, 1078
SduI	GDGCHC	1 cut(s)	1274
SfaNI	GCATC	2 cut(s)	1178, 1225
SfcI	CTRYAG	1 cut(s)	1239
SinI	GGWCC	3 cut(s)	499, 538, 1027
SmiMI	CAYNNNNRTG	1 cut(s)	303
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	4 cut(s)	144, 522, 720, 723
SspMI	CTAG	2 cut(s)	708, 960
StuI	AGGCCT	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	1364
TaaI	ACNGT	6 cut(s)	101, 625, 874, 981, 1183, 1382
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	2 cut(s)	561, 923
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	1 cut(s)	1073
Tru1I	TTAA	4 cut(s)	114, 903, 1040, 1402
Tru9I	TTAA	4 cut(s)	114, 903, 1040, 1402
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	1252
TseI	GCWGC	3 cut(s)	1158, 1238, 1241
Tsp45I	GTSAC	1 cut(s)	1252
TspDTI	ATGAA	8 cut(s)	197, 311, 339, 695, 1034, 1035, 1181, 1193
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	3 cut(s)	499, 538, 1027
XapI	RAATTY	1 cut(s)	394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XmiI	GTMKAC	1 cut(s)	1374
XspI	CTAG	2 cut(s)	708, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.