Rh7DG068400
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008501
Physical Location & Seq
Reverse (-)
5274236 .. 5277295
3060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG068400.1

Sequence Viewer

Length: 1365 bp
ATGTTTTCTTATAGCTCAAACGCTATTAGCACCGGTACTACTGGCAATTACTACGAACCTGCCGTGCCTTTTCCTCATGACCAATCCTTTTTGATCCACAGTAGGCCTTTTCTTAATTCTACTACCAATCCAAATTGCAATTCCGCTTCAGTTATTTCCAATTCCAAACAAGATCAAGATCTACAAGAAGACCCTCATCATCATATTCATCCTCCTTTGTCTTTCTTTTACTTCCCCTCTCCCTTTGAAGACGACGATGTTTTACTCCGCCAACACCACCACCACCATGACCTGTCGTCGCTTCATGAAAATACCTTATTTGCCCATCATCATCATCATCATCATCGTCATCATCATCAGACCGGTACTCCTCTCACTGCTACAATGGTGGAGGGGGATTCTAACAAAGATGATCAGGTGGTGATCGGTAAGGAAGGTGAGCAACAGCAACAACAACAGAAACAGATCCCGATGACGAGAAGATCTAGCAAGAAGGACCGGCACAGCAAGATTAGCACTGCCCGAGGACTGAGGGACCGGAGAATGAGATTGTCCCTCGATGTTGCCAGAAAGTTCTTTGGTTTGCAAGACATGCTCGGCTTTGACAAGGCCAGCAAGACGGTGGAGTGGTTGCTCAATCAGGCAGAAGCTGAAATCAAGAAAGTAAAAAGAGAAATGAACGGTCAGAACGAAAACCAAAGCTCTAGCACTACTACCGCCGCAGGAGCAGGTGCTAGAGCCAGAACCACATCTTCCATATCCGAGTGTGAAGTTGTATCCGGTACAGATGAGGTCGCGACTGATGATATTATTGATAAGGTAAGCCGGACATCCTCTTCTTCTTCTGCCAAAAATCGGATCAAAAGGATTGTCAGGCAACCAAAGAAGAGTGCATTGTTTAACCCTCTTGCAAAGGCGTCGAGGGAAATGGCAAGAGCGAGAGCAAGAGAAAGAACTAGAGAAAAGATGGGGAGACAGTCAAAGCCATGTGGTGATGTTGATCAGGCAAAGAAGATGAAGCCGGACCTGAGCCAATTAAGTTCATGGAGTACATTTGAAACCGGAGAAGAATCTGGAGCGACTCAAAGCCACAACAACAACATCAACAATCATTCTCCATTGGAAGCACTTGCTGAGGTTGAAGAGCCAATAAGCAGCTTCCAAGCAGCTGCGACTACGGTAGTAGTTCATCGTCATATTCATCAAGACTTGATTGAAATTGATGGTCATGATGCTGTAGCTAACTTGGTGACAATGGGAAAGTGGAGCCCCTCTTCCACTTTCAATTCTCTTCAAAATACTTCTGGATCAATTTCACAAGAGGTATGTAGTACCACTACTCGATTAATCTTTTGTGCTGTATAA

Protein Analysis

454

Amino Acids

50.73

Weight (kDa)

7.46

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 163 - 324 2.1e-44 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 719
Acc36I ACCTGC 2 cut(s) 67, 719
AccII CGCG 1 cut(s) 797
AciI CCGC 4 cut(s) 144, 268, 717, 720
AclWI GGATC 4 cut(s) 88, 460, 866, 1315
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 917
AfaI GTAC 5 cut(s) 37, 367, 784, 1051, 1333
AfiI CCNNNNNNNGG 1 cut(s) 855
AgeI ACCGGT 2 cut(s) 32, 362
AgsI TTSAA 6 cut(s) 248, 1058, 1142, 1217, 1285, 1295
AhdI GACNNNNNGTC 1 cut(s) 295
AjuI GAANNNNNNNTTGG 2 cut(s) 124, 156
AluBI AGCT 6 cut(s) 15, 650, 702, 1158, 1169, 1241
AluI AGCT 6 cut(s) 15, 650, 702, 1158, 1169, 1241
Alw26I GTCTC 1 cut(s) 967
AlwI GGATC 4 cut(s) 88, 460, 866, 1315
AlwNI CAGNNNCTG 1 cut(s) 650
Ama87I CYCGRG 1 cut(s) 522
AoxI GGCC 2 cut(s) 104, 609
ApeKI GCWGC 3 cut(s) 1155, 1166, 1169
ArsI GACNNNNNNTTYG 2 cut(s) 855, 887
AseI ATTAAT 1 cut(s) 1346
AsiGI ACCGGT 2 cut(s) 32, 362
AspS9I GGNCC 3 cut(s) 496, 535, 1024
AsuHPI GGTGA 4 cut(s) 433, 449, 1004, 1261
AvaI CYCGRG 1 cut(s) 522
AvaII GGWCC 3 cut(s) 496, 535, 1024
BanII GRGCYC 1 cut(s) 1271
BbsI GAAGAC 2 cut(s) 195, 255
BbvCI CCTCAGC 1 cut(s) 1134
BbvI GCAGC 3 cut(s) 1156, 1167, 1178
BccI CCATC 3 cut(s) 333, 961, 1217
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 900, 934
BciVI GTATCC 1 cut(s) 787
BclI TGATCA 2 cut(s) 412, 1000
BcoDI GTCTC 1 cut(s) 967
BfaI CTAG 4 cut(s) 486, 705, 735, 957
BfmI CTRYAG 1 cut(s) 1236
BfuAI ACCTGC 2 cut(s) 67, 719
BfuI GTATCC 1 cut(s) 787
BglII AGATCT 2 cut(s) 178, 482
BisI GCNGC 4 cut(s) 720, 1156, 1167, 1170
BlsI GCNGC 4 cut(s) 721, 1157, 1168, 1171
Bme18I GGWCC 3 cut(s) 496, 535, 1024
BmeRI GACNNNNNGTC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 522
BmgT120I GGNCC 3 cut(s) 496, 535, 1024
BmiI GGNNCC 2 cut(s) 536, 1268
BmsI GCATC 1 cut(s) 1222
BpiI GAAGAC 2 cut(s) 195, 255
BpmI CTGGAG 1 cut(s) 1095
Bpu10I CCTNAGC 2 cut(s) 1028, 1134
BsaBI GATNNNNATC 2 cut(s) 177, 999
BsaHI GRCGYC 1 cut(s) 917
BsaJI CCNNGG 1 cut(s) 523
BsaWI WCCGGW 5 cut(s) 32, 362, 537, 779, 1061
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 855
Bse118I RCCGGY 3 cut(s) 32, 362, 498
Bse1I ACTGG 1 cut(s) 46
Bse8I GATNNNNATC 2 cut(s) 177, 999
BseDI CCNNGG 1 cut(s) 523
BseGI GGATG 2 cut(s) 208, 830
BseJI GATNNNNATC 2 cut(s) 177, 999
BseLI CCNNNNNNNGG 1 cut(s) 855
BseMII CTCAG 3 cut(s) 521, 1019, 1125
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 3 cut(s) 1156, 1167, 1178
Bsh1236I CGCG 1 cut(s) 797
BshFI GGCC 2 cut(s) 106, 611
BshTI ACCGGT 2 cut(s) 32, 362
BsiHKCI CYCGRG 1 cut(s) 522
BsiSI CCGG 8 cut(s) 33, 363, 499, 538, 780, 826, 1022, 1062
BslFI GGGAC 2 cut(s) 538, 548
BslI CCNNNNNNNGG 1 cut(s) 855
BsmAI GTCTC 1 cut(s) 967
BsmFI GGGAC 2 cut(s) 538, 548
BsnI GGCC 2 cut(s) 106, 611
BsoBI CYCGRG 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 1271
Bsp68I TCGCGA 1 cut(s) 797
BspACI CCGC 4 cut(s) 144, 268, 717, 720
BspANI GGCC 2 cut(s) 106, 611
BspCNI CTCAG 3 cut(s) 522, 1020, 1126
BspFNI CGCG 1 cut(s) 797
BspHI TCATGA 3 cut(s) 76, 304, 1228
BspLI GGNNCC 2 cut(s) 536, 1268
BspMI ACCTGC 2 cut(s) 67, 719
BspPI GGATC 4 cut(s) 88, 460, 866, 1315
BspQI GCTCTTC 1 cut(s) 1137
BsrFI RCCGGY 3 cut(s) 32, 362, 498
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 3 cut(s) 32, 362, 498
BssECI CCNNGG 1 cut(s) 523
BssNI GRCGYC 1 cut(s) 917
Bst4CI ACNGT 5 cut(s) 101, 622, 683, 978, 1180
Bst6I CTCTTC 5 cut(s) 841, 881, 1137, 1279, 1296
BstACI GRCGYC 1 cut(s) 917
BstAPI GCANNNNNTGC 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 3 cut(s) 530, 1028, 1134
BstF5I GGATG 2 cut(s) 208, 830
BstFNI CGCG 1 cut(s) 797
BstMAI GTCTC 1 cut(s) 967
BstMWI GCNNNNNNNGC 3 cut(s) 513, 592, 725
BstNSI RCATGY 1 cut(s) 595
BstSFI CTRYAG 1 cut(s) 1236
BstUI CGCG 1 cut(s) 797
BstV1I GCAGC 3 cut(s) 1156, 1167, 1178
BstV2I GAAGAC 2 cut(s) 195, 255
BstX2I RGATCY 3 cut(s) 178, 465, 482
BstYI RGATCY 3 cut(s) 178, 465, 482
BsuI GTATCC 1 cut(s) 787
BsuRI GGCC 2 cut(s) 106, 611
BtsCI GGATG 2 cut(s) 208, 830
BtsI GCAGTG 2 cut(s) 375, 516
BtsIMutI CAGTG 2 cut(s) 375, 516
BtuMI TCGCGA 1 cut(s) 797
BveI ACCTGC 2 cut(s) 67, 719
Cac8I GCNNGC 1 cut(s) 613
CaiI CAGNNNCTG 1 cut(s) 650
CciI TCATGA 3 cut(s) 76, 304, 1228
Cfr10I RCCGGY 3 cut(s) 32, 362, 498
Cfr13I GGNCC 3 cut(s) 496, 535, 1024
CseI GACGC 1 cut(s) 906
Csp6I GTAC 5 cut(s) 36, 366, 783, 1050, 1332
CspAI ACCGGT 2 cut(s) 32, 362
CviAII CATG 7 cut(s) 77, 287, 305, 592, 987, 1044, 1229
CviQI GTAC 5 cut(s) 36, 366, 783, 1050, 1332
DdeI CTNAG 3 cut(s) 530, 1028, 1134
DriI GACNNNNNGTC 1 cut(s) 295
Eam1104I CTCTTC 5 cut(s) 841, 881, 1137, 1279, 1296
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 5 cut(s) 841, 881, 1137, 1279, 1296
EciI GGCGGA 1 cut(s) 257
Eco147I AGGCCT 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 1271
Eco47I GGWCC 3 cut(s) 496, 535, 1024
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 522
EcoT38I GRGCYC 1 cut(s) 1271
FaeI CATG 7 cut(s) 80, 290, 308, 595, 990, 1047, 1232
FaqI GGGAC 2 cut(s) 538, 548
FatI CATG 7 cut(s) 76, 286, 304, 591, 986, 1043, 1228
FbaI TGATCA 2 cut(s) 412, 1000
Fnu4HI GCNGC 4 cut(s) 720, 1156, 1167, 1170
FokI GGATG 2 cut(s) 195, 817
FriOI GRGCYC 1 cut(s) 1271
Fsp4HI GCNGC 4 cut(s) 720, 1156, 1167, 1170
FspBI CTAG 4 cut(s) 486, 705, 735, 957
GluI GCNGC 4 cut(s) 720, 1156, 1167, 1170
GsuI CTGGAG 1 cut(s) 1095
HaeIII GGCC 2 cut(s) 106, 611
HapII CCGG 8 cut(s) 33, 363, 499, 538, 780, 826, 1022, 1062
HgaI GACGC 1 cut(s) 906
Hin1I GRCGYC 1 cut(s) 917
Hin1II CATG 7 cut(s) 80, 290, 308, 595, 990, 1047, 1232
HinfI GANTC 3 cut(s) 398, 1070, 1081
HpaII CCGG 8 cut(s) 33, 363, 499, 538, 780, 826, 1022, 1062
HphI GGTGA 4 cut(s) 433, 449, 1004, 1261
Hpy188I TCNGA 4 cut(s) 360, 687, 763, 858
Hpy99I CGWCG 3 cut(s) 257, 301, 922
HpyAV CCTTC 2 cut(s) 428, 487
HpyCH4III ACNGT 5 cut(s) 101, 622, 683, 978, 1180
HpyCH4V TGCA 4 cut(s) 138, 586, 893, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 513, 592, 725
HpyF3I CTNAG 3 cut(s) 530, 1028, 1134
Hsp92I GRCGYC 1 cut(s) 917
Hsp92II CATG 7 cut(s) 80, 290, 308, 595, 990, 1047, 1232
Ksp22I TGATCA 2 cut(s) 412, 1000
LguI GCTCTTC 1 cut(s) 1137
LmnI GCTCC 3 cut(s) 725, 1076, 1266
Lsp1109I GCAGC 3 cut(s) 1156, 1167, 1178
LweI GCATC 1 cut(s) 1222
MaeI CTAG 4 cut(s) 486, 705, 735, 957
MaeIII GTNAC 1 cut(s) 1249
MflI RGATCY 3 cut(s) 178, 465, 482
MhlI GDGCHC 1 cut(s) 1271
MluCI AATT 9 cut(s) 46, 115, 133, 139, 160, 1034, 1218, 1285, 1311
MlyI GAGTC 1 cut(s) 1075
MseI TTAA 4 cut(s) 114, 900, 1037, 1346
MslI CAYNNNNRTG 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 1169
MspI CCGG 8 cut(s) 33, 363, 499, 538, 780, 826, 1022, 1062
MvnI CGCG 1 cut(s) 797
MwoI GCNNNNNNNGC 3 cut(s) 513, 592, 725
NlaIII CATG 7 cut(s) 80, 290, 308, 595, 990, 1047, 1232
NlaIV GGNNCC 2 cut(s) 536, 1268
NmeAIII GCCGAG 1 cut(s) 576
NmuCI GTSAC 1 cut(s) 1249
NruI TCGCGA 1 cut(s) 797
NspI RCATGY 1 cut(s) 595
PagI TCATGA 3 cut(s) 76, 304, 1228
PaqCI CACCTGC 1 cut(s) 719
PceI AGGCCT 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 1137
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 687
PfeI GAWTC 2 cut(s) 398, 1070
PinAI ACCGGT 2 cut(s) 32, 362
PkrI GCNGC 4 cut(s) 721, 1157, 1168, 1171
PleI GAGTC 1 cut(s) 1075
PpsI GAGTC 1 cut(s) 1075
PshBI ATTAAT 1 cut(s) 1346
PspN4I GGNNCC 2 cut(s) 536, 1268
PspPI GGNCC 3 cut(s) 496, 535, 1024
PstNI CAGNNNCTG 1 cut(s) 650
PsuI RGATCY 3 cut(s) 178, 465, 482
PvuII CAGCTG 1 cut(s) 1169
RruI TCGCGA 1 cut(s) 797
RsaI GTAC 5 cut(s) 37, 367, 784, 1051, 1333
RsaNI GTAC 5 cut(s) 36, 366, 783, 1050, 1332
RseI CAYNNNNRTG 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 1137
SaqAI TTAA 4 cut(s) 114, 900, 1037, 1346
SatI GCNGC 4 cut(s) 720, 1156, 1167, 1170
Sau96I GGNCC 3 cut(s) 496, 535, 1024
SchI GAGTC 1 cut(s) 1075
SduI GDGCHC 1 cut(s) 1271
SfaNI GCATC 1 cut(s) 1222
SfcI CTRYAG 1 cut(s) 1236
SinI GGWCC 3 cut(s) 496, 535, 1024
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 9 cut(s) 46, 115, 133, 139, 160, 1034, 1218, 1285, 1311
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 4 cut(s) 144, 268, 717, 720
SspMI CTAG 4 cut(s) 486, 705, 735, 957
StuI AGGCCT 1 cut(s) 106
TaaI ACNGT 5 cut(s) 101, 622, 683, 978, 1180
TaqI TCGA 3 cut(s) 558, 920, 1342
TasI AATT 9 cut(s) 46, 115, 133, 139, 160, 1034, 1218, 1285, 1311
TatI WGTACW 1 cut(s) 1049
TauI GCSGC 1 cut(s) 722
TfiI GAWTC 2 cut(s) 398, 1070
Tru1I TTAA 4 cut(s) 114, 900, 1037, 1346
Tru9I TTAA 4 cut(s) 114, 900, 1037, 1346
TscAI CASTG 2 cut(s) 382, 523
TseFI GTSAC 1 cut(s) 1249
TseI GCWGC 3 cut(s) 1155, 1166, 1169
Tsp45I GTSAC 1 cut(s) 1249
TspDTI ATGAA 8 cut(s) 197, 293, 321, 692, 1031, 1032, 1178, 1190
TspRI CASTG 2 cut(s) 382, 523
VpaK11BI GGWCC 3 cut(s) 496, 535, 1024
VspI ATTAAT 1 cut(s) 1346
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 619
XspI CTAG 4 cut(s) 486, 705, 735, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.