MD14G1221800.v1.1
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0008501
Physical Location & Seq
Reverse (-)
30342865 .. 30345427
2563 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1221800.v1.1.491

Sequence Viewer

Length: 1440 bp
ATGTTTCCCTCAGACAACACCAGTAATGTTAACGAATTAATACCCGTGTCTTATCCTCATGTCGATCAACCATTTTTCCACAGCCGGCCATTTGACCATGACATTACTACAGTAACCCCCAATTTCTTTACTAATTCCAACCCCAATCCCAACTCCGGGCAACAACAAGAAGGAGGAGAAGAAAACCTTCATCAACAACATCATCACCCTCCTTTGTCTTTGCTCTACTTCCCCTCTCCGTTTGAAGACGACGACGTTTTACTCTTTCAGCAACACCATCACCAAGAACCTGACCATATTGGGATTTCGCTTCACGAGTCTCAAGTACCACCTTATTTTATGAAGGAAGCTGCTGCTGCGGCTACCGCCACTGCCGCCGCTGCTGCTGCTGCTGCTGCCGCTGCCGCCACTGCCGCTGATGACAACACCGGTACCGTCGTAGGGGTTGATCATCAGAAGACTACTACTACAAGTGTTAACATTAAAATGGTGGACTGGGATTCCAACAAAAATGGCCATCACGTGTACATGGATGATCAGCCGCAGATCCCGAGAAGGAGGACTAGCAAGAGAGATCGCCACAGCAAGATCAACACTGCCCGAGGCCCCAGGGACCGGAGAATGAGATTGTCCCTAGAAGTTGCCCGTAAGTTCTTCGGCTTGCAAGATGTGTTGGAATTTGACAAGGCCAGCAAAACCGTGGAGTGGTTGCTCATTCAGTCAGAACCCGAAATCAAGAAACTATCAAGAGATCACCATCGGAAATTCAACTACAAAAACATGGTGAGATGTGCCAAAACTACATCTCCAGCCACTTCGGAATCGTGTGAAATGCTATCCGGCGTAGACGAGGCTCCAACAAACATTAACATTAGTAATGGTGGCAACGATGATAATGATAAAGTAAGAAGCAGCGGGATCAAACCCTCAGCGAAAGAGAGAAAGATTGTCCACAGGCAATCAAGGAAGGGCGCATTTCACCCTCTTGCAAAGGCTTCGAGGGAAAAGGCAAGGGCAAGGGCTAGGGAAAGAACAAGAGAAAAGATGCAGAGATCAAAGAAGCCTAGTAATGACCAGGCAAAACTAAGCCGTTTGAATTCTTGGAACCCATTTGAAAGTGGGGAAGAATCATCAGCTTACAACAACAACATGAACAATACTACTAACGATCAGCCTGATTCAATGGTGGCGCTGCGACCTTACCCCGATGGGGTTGAAGAACCATTAAGCAGCTCCCTAGCCGGAGATATTCAAGACATGGTTGTTGATCATGGTACTACTCATGATGCTATGATGGTAATGGGAAAGTGGAGCCCTTCTTCAGTGTTCACTCCTCTCCAGCAAAATACTGGAATTTCCCAAGAGCACCAACAGTTTGCCGACTTTCAATTCTTTGACAAACCGTGGGACGTCTACAACAATACTCATAAGCTATTCTAA

Protein Analysis

480

Amino Acids

53.96

Weight (kDa)

6.56

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 188 - 351 1.8e-44 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1413
Acc65I GGTACC 1 cut(s) 431
AccB1I GGYRCC 1 cut(s) 431
AccI GTMKAC 2 cut(s) 846, 1413
AciI CCGC 9 cut(s) 359, 366, 375, 378, 399, 405, 414, 542, 915
AclWI GGATC 2 cut(s) 541, 926
AcoI YGGCCR 2 cut(s) 86, 514
AcsI RAATTY 4 cut(s) 677, 764, 1096, 1353
AcuI CTGAAG 1 cut(s) 1305
AcvI CACGTG 1 cut(s) 523
AcyI GRCGYC 1 cut(s) 1410
AfaI GTAC 4 cut(s) 327, 433, 527, 1276
AfiI CCNNNNNNNGG 6 cut(s) 155, 156, 441, 615, 705, 1210
AflIII ACRYGT 1 cut(s) 522
AgeI ACCGGT 1 cut(s) 428
AgsI TTSAA 8 cut(s) 245, 769, 1096, 1115, 1182, 1217, 1253, 1388
AjnI CCWGG 2 cut(s) 608, 1074
AluBI AGCT 4 cut(s) 350, 1136, 1233, 1432
AluI AGCT 4 cut(s) 350, 1136, 1233, 1432
Alw21I GWGCWC 1 cut(s) 1368
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 2 cut(s) 541, 926
Ama87I CYCGRG 2 cut(s) 550, 600
AoxI GGCC 4 cut(s) 86, 514, 604, 687
ApoI RAATTY 4 cut(s) 677, 764, 1096, 1353
AseI ATTAAT 1 cut(s) 38
AsiGI ACCGGT 1 cut(s) 428
Asp700I GAANNNNTTC 1 cut(s) 186
Asp718I GGTACC 1 cut(s) 431
AspLEI GCGC 2 cut(s) 974, 1192
AspS9I GGNCC 2 cut(s) 605, 613
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 5 cut(s) 197, 272, 746, 796, 971
AvaI CYCGRG 2 cut(s) 550, 600
AvaII GGWCC 1 cut(s) 613
BaeI ACNNNNGTAYC 4 cut(s) 415, 423, 448, 456
BalI TGGCCA 1 cut(s) 516
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 1316
BauI CACGAG 1 cut(s) 314
BbrPI CACGTG 1 cut(s) 523
BbsI GAAGAC 2 cut(s) 252, 464
Bbv12I GWGCWC 1 cut(s) 1368
BbvCI CCTCAGC 1 cut(s) 928
BccI CCATC 5 cut(s) 285, 525, 765, 1202, 1288
BceAI ACGGC 1 cut(s) 1074
BcgI CGANNNNNNTGC 2 cut(s) 978, 1012
BciT130I CCWGG 2 cut(s) 610, 1076
BclI TGATCA 3 cut(s) 448, 535, 1267
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 5 cut(s) 564, 635, 1023, 1065, 1238
BfmI CTRYAG 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 1193
Bme1390I CCNGG 3 cut(s) 157, 610, 1076
Bme18I GGWCC 1 cut(s) 613
BmeT110I CYCGRG 2 cut(s) 550, 600
BmgT120I GGNCC 2 cut(s) 605, 613
BmiI GGNNCC 6 cut(s) 433, 607, 614, 855, 1106, 1313
BmrFI CCNGG 3 cut(s) 157, 610, 1076
BmrI ACTGGG 1 cut(s) 505
BmsI GCATC 2 cut(s) 1035, 1276
BmuI ACTGGG 1 cut(s) 505
BpiI GAAGAC 2 cut(s) 252, 464
BpmI CTGGAG 2 cut(s) 792, 1322
Bpu10I CCTNAGC 1 cut(s) 928
BpuEI CTTGAG 1 cut(s) 306
BpuMI CCSGG 1 cut(s) 157
BsaAI YACGTR 1 cut(s) 523
BsaBI GATNNNNATC 1 cut(s) 756
BsaHI GRCGYC 1 cut(s) 1410
BsaJI CCNNGG 5 cut(s) 601, 608, 609, 699, 1403
BsaWI WCCGGW 2 cut(s) 428, 615
BsaXI ACNNNNNCTCC 2 cut(s) 790, 820
Bsc4I CCNNNNNNNGG 6 cut(s) 155, 156, 441, 615, 705, 1210
Bse118I RCCGGY 2 cut(s) 84, 428
Bse1I ACTGG 3 cut(s) 21, 500, 1354
Bse8I GATNNNNATC 1 cut(s) 756
BseBI CCWGG 2 cut(s) 610, 1076
BseDI CCNNGG 5 cut(s) 601, 608, 609, 699, 1403
BseGI GGATG 1 cut(s) 538
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 6 cut(s) 155, 156, 441, 615, 705, 1210
BseMII CTCAG 2 cut(s) 24, 942
BseNI ACTGG 3 cut(s) 21, 500, 1354
BseRI GAGGAG 2 cut(s) 189, 1323
BshFI GGCC 4 cut(s) 88, 516, 606, 689
BshNI GGYRCC 1 cut(s) 431
BshTI ACCGGT 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 1368
BsiHKCI CYCGRG 2 cut(s) 550, 600
BsiSI CCGG 6 cut(s) 85, 156, 429, 616, 840, 1242
BslFI GGGAC 3 cut(s) 616, 626, 1421
BslI CCNNNNNNNGG 6 cut(s) 155, 156, 441, 615, 705, 1210
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 3 cut(s) 616, 626, 1421
BsnI GGCC 4 cut(s) 88, 516, 606, 689
BsoBI CYCGRG 2 cut(s) 550, 600
Bsp1286I GDGCHC 2 cut(s) 1316, 1368
Bsp1407I TGTACA 1 cut(s) 525
BspACI CCGC 9 cut(s) 359, 366, 375, 378, 399, 405, 414, 542, 915
BspANI GGCC 4 cut(s) 88, 516, 606, 689
BspCNI CTCAG 2 cut(s) 23, 941
BspHI TCATGA 1 cut(s) 1282
BspLI GGNNCC 6 cut(s) 433, 607, 614, 855, 1106, 1313
BspPI GGATC 2 cut(s) 541, 926
BspT107I GGYRCC 1 cut(s) 431
BsrFI RCCGGY 2 cut(s) 84, 428
BsrGI TGTACA 1 cut(s) 525
BsrI ACTGG 3 cut(s) 21, 500, 1354
BssAI RCCGGY 2 cut(s) 84, 428
BssECI CCNNGG 5 cut(s) 601, 608, 609, 699, 1403
BssNI GRCGYC 1 cut(s) 1410
BssSI CACGAG 1 cut(s) 314
Bst2BI CACGAG 1 cut(s) 314
Bst2UI CCWGG 2 cut(s) 610, 1076
Bst4CI ACNGT 5 cut(s) 112, 436, 700, 1374, 1404
BstACI GRCGYC 1 cut(s) 1410
BstAUI TGTACA 1 cut(s) 525
BstBAI YACGTR 1 cut(s) 523
BstC8I GCNNGC 3 cut(s) 86, 662, 691
BstDEI CTNAG 3 cut(s) 10, 928, 1085
BstDSI CCRYGG 2 cut(s) 699, 1403
BstF5I GGATG 1 cut(s) 538
BstH2I RGCGCY 1 cut(s) 1193
BstHHI GCGC 2 cut(s) 974, 1192
BstMAI GTCTC 1 cut(s) 324
BstNI CCWGG 2 cut(s) 610, 1076
BstSCI CCNGG 3 cut(s) 155, 608, 1074
BstSFI CTRYAG 1 cut(s) 108
BstV2I GAAGAC 2 cut(s) 252, 464
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BsuRI GGCC 4 cut(s) 88, 516, 606, 689
BtgI CCRYGG 2 cut(s) 699, 1403
BtsCI GGATG 1 cut(s) 538
BtsI GCAGTG 3 cut(s) 369, 408, 594
BtsIMutI CAGTG 4 cut(s) 369, 408, 594, 1329
Cac8I GCNNGC 3 cut(s) 86, 662, 691
CciI TCATGA 1 cut(s) 1282
CfoI GCGC 2 cut(s) 974, 1192
Cfr10I RCCGGY 2 cut(s) 84, 428
Cfr13I GGNCC 2 cut(s) 605, 613
Csp6I GTAC 4 cut(s) 326, 432, 526, 1275
CspAI ACCGGT 1 cut(s) 428
CviAII CATG 8 cut(s) 59, 98, 529, 781, 1150, 1258, 1271, 1283
CviQI GTAC 4 cut(s) 326, 432, 526, 1275
DdeI CTNAG 3 cut(s) 10, 928, 1085
EaeI YGGCCR 2 cut(s) 86, 514
Eco24I GRGCYC 1 cut(s) 1316
Eco47I GGWCC 1 cut(s) 613
Eco57I CTGAAG 1 cut(s) 1305
Eco72I CACGTG 1 cut(s) 523
Eco88I CYCGRG 2 cut(s) 550, 600
EcoO109I RGGNCCY 1 cut(s) 605
EcoRI GAATTC 1 cut(s) 1096
EcoRII CCWGG 2 cut(s) 608, 1074
EcoT38I GRGCYC 1 cut(s) 1316
FaeI CATG 8 cut(s) 62, 101, 532, 784, 1153, 1261, 1274, 1286
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 3 cut(s) 616, 626, 1421
FatI CATG 8 cut(s) 58, 97, 528, 780, 1149, 1257, 1270, 1282
FauI CCCGC 1 cut(s) 908
FbaI TGATCA 3 cut(s) 448, 535, 1267
FblI GTMKAC 2 cut(s) 846, 1413
FokI GGATG 1 cut(s) 545
FriOI GRGCYC 1 cut(s) 1316
FspBI CTAG 5 cut(s) 564, 635, 1023, 1065, 1238
GlaI GCGC 2 cut(s) 973, 1191
GsuI CTGGAG 2 cut(s) 792, 1322
HaeII RGCGCY 1 cut(s) 1193
HaeIII GGCC 4 cut(s) 88, 516, 606, 689
HapII CCGG 6 cut(s) 85, 156, 429, 616, 840, 1242
HhaI GCGC 2 cut(s) 974, 1192
Hin1I GRCGYC 1 cut(s) 1410
Hin1II CATG 8 cut(s) 62, 101, 532, 784, 1153, 1261, 1274, 1286
Hin6I GCGC 2 cut(s) 972, 1190
HinP1I GCGC 2 cut(s) 972, 1190
HincII GTYRAC 2 cut(s) 31, 478
HindII GTYRAC 2 cut(s) 31, 478
HinfI GANTC 5 cut(s) 317, 500, 821, 1127, 1178
HpaI GTTAAC 2 cut(s) 31, 478
HpaII CCGG 6 cut(s) 85, 156, 429, 616, 840, 1242
HphI GGTGA 5 cut(s) 197, 272, 746, 796, 971
Hpy166II GTNNAC 8 cut(s) 31, 478, 493, 526, 847, 952, 1329, 1414
Hpy188I TCNGA 5 cut(s) 13, 456, 724, 762, 820
Hpy188III TCNNGA 6 cut(s) 314, 550, 736, 747, 1253, 1283
Hpy8I GTNNAC 8 cut(s) 31, 478, 493, 526, 847, 952, 1329, 1414
Hpy99I CGWCG 3 cut(s) 254, 257, 440
HpyAV CCTTC 6 cut(s) 164, 197, 337, 549, 961, 1326
HpyCH4III ACNGT 5 cut(s) 112, 436, 700, 1374, 1404
HpyCH4IV ACGT 3 cut(s) 255, 522, 1410
HpyCH4V TGCA 3 cut(s) 664, 989, 1048
HpyF3I CTNAG 3 cut(s) 10, 928, 1085
HpySE526I ACGT 3 cut(s) 255, 522, 1410
Hsp92I GRCGYC 1 cut(s) 1410
Hsp92II CATG 8 cut(s) 62, 101, 532, 784, 1153, 1261, 1274, 1286
HspAI GCGC 2 cut(s) 972, 1190
KpnI GGTACC 1 cut(s) 435
KroI GCCGGC 1 cut(s) 84
KroNI GCCGGC 1 cut(s) 86
Ksp22I TGATCA 3 cut(s) 448, 535, 1267
KspAI GTTAAC 2 cut(s) 31, 478
LmnI GCTCC 3 cut(s) 859, 1238, 1311
LweI GCATC 2 cut(s) 1035, 1276
MaeI CTAG 5 cut(s) 564, 635, 1023, 1065, 1238
MaeII ACGT 3 cut(s) 255, 522, 1410
MaeIII GTNAC 1 cut(s) 112
MboII GAAGA 7 cut(s) 191, 257, 469, 646, 1136, 1229, 1311
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 2 cut(s) 1316, 1368
MlsI TGGCCA 1 cut(s) 516
MluCI AATT 8 cut(s) 35, 121, 133, 677, 764, 1096, 1353, 1388
MluNI TGGCCA 1 cut(s) 516
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 4 cut(s) 162, 528, 654, 881
Mox20I TGGCCA 1 cut(s) 516
MroNI GCCGGC 1 cut(s) 84
MroXI GAANNNNTTC 1 cut(s) 186
MscI TGGCCA 1 cut(s) 516
MseI TTAA 6 cut(s) 30, 38, 477, 483, 867, 1226
MslI CAYNNNNRTG 1 cut(s) 485
Msp20I TGGCCA 1 cut(s) 516
MspA1I CMGCKG 4 cut(s) 380, 401, 416, 915
MspI CCGG 6 cut(s) 85, 156, 429, 616, 840, 1242
MspR9I CCNGG 3 cut(s) 157, 610, 1076
MvaI CCWGG 2 cut(s) 610, 1076
NaeI GCCGGC 1 cut(s) 86
NciI CCSGG 1 cut(s) 157
NgoMIV GCCGGC 1 cut(s) 84
NlaIII CATG 8 cut(s) 62, 101, 532, 784, 1153, 1261, 1274, 1286
NlaIV GGNNCC 6 cut(s) 433, 607, 614, 855, 1106, 1313
PagI TCATGA 1 cut(s) 1282
PasI CCCWGGG 1 cut(s) 609
PdiI GCCGGC 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 4 cut(s) 500, 821, 1127, 1178
PinAI ACCGGT 1 cut(s) 428
PleI GAGTC 1 cut(s) 325
PmaCI CACGTG 1 cut(s) 523
PmlI CACGTG 1 cut(s) 523
PpsI GAGTC 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 523
PshBI ATTAAT 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 608, 1074
PspCI CACGTG 1 cut(s) 523
PspGI CCWGG 2 cut(s) 608, 1074
PspN4I GGNNCC 6 cut(s) 433, 607, 614, 855, 1106, 1313
PspPI GGNCC 2 cut(s) 605, 613
PsuI RGATCY 1 cut(s) 546
RsaI GTAC 4 cut(s) 327, 433, 527, 1276
RsaNI GTAC 4 cut(s) 326, 432, 526, 1275
RseI CAYNNNNRTG 1 cut(s) 485
SaqAI TTAA 6 cut(s) 30, 38, 477, 483, 867, 1226
Sau96I GGNCC 2 cut(s) 605, 613
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 3 cut(s) 157, 610, 1076
SduI GDGCHC 2 cut(s) 1316, 1368
SfaNI GCATC 2 cut(s) 1035, 1276
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 613
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
Sse9I AATT 8 cut(s) 35, 121, 133, 677, 764, 1096, 1353, 1388
SsiI CCGC 9 cut(s) 359, 366, 375, 378, 399, 405, 414, 542, 915
SspMI CTAG 5 cut(s) 564, 635, 1023, 1065, 1238
StyD4I CCNGG 3 cut(s) 155, 608, 1074
TaaI ACNGT 5 cut(s) 112, 436, 700, 1374, 1404
TaiI ACGT 3 cut(s) 258, 525, 1413
TaqI TCGA 2 cut(s) 63, 998
TasI AATT 8 cut(s) 35, 121, 133, 677, 764, 1096, 1353, 1388
TatI WGTACW 1 cut(s) 525
TauI GCSGC 7 cut(s) 362, 377, 380, 401, 407, 416, 544
TfiI GAWTC 4 cut(s) 500, 821, 1127, 1178
Tru1I TTAA 6 cut(s) 30, 38, 477, 483, 867, 1226
Tru9I TTAA 6 cut(s) 30, 38, 477, 483, 867, 1226
TscAI CASTG 4 cut(s) 376, 415, 601, 1329
TspDTI ATGAA 3 cut(s) 179, 356, 1166
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 4 cut(s) 376, 415, 601, 1329
VpaK11BI GGWCC 1 cut(s) 613
VspI ATTAAT 1 cut(s) 38
XapI RAATTY 4 cut(s) 677, 764, 1096, 1353
XcmI CCANNNNNNNNNTGG 2 cut(s) 697, 1346
XmiI GTMKAC 2 cut(s) 846, 1413
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 5 cut(s) 564, 635, 1023, 1065, 1238
ZraI GACGTC 1 cut(s) 1411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.