Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8093794.1

Orthogroup ID

OG0008501

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 595

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8093794.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 595 bp

cccatcatcatcatcatcatcgtcatcatcatcagaccggtactcctctcactgctacaatggtggagggggattctaacaaagatgatcaggtggtgatcggtaaggaaggtgagcaacagcaacaacaacagaaacagatcccgatgacgagaagatcttgcaagaaggaccggcacagcaagattagcactgcccgaggactgagggaccggagaatgagattgtccctcgatgttgccagaaagttctttggtttgcaagacatgctcggctttgacaaggccagcaagacggtggagtggttgctcaatcaggcagaagctgaaatcaagaaagtaaaaagagaaatgaacggtcagaacgaaaaccaaagctctagcactactaccgccgcaggagcaggtgctagagccagaaccacatcatccatatccgagtgtgaagttgtatccggtacagatgaggtcgcgactgatgatattattgataaggtaagccggacatcctcttcttcttctgccaaaaatcggatcaaaaggactgtcaggcaaccaaagaagagtgcattgtttaaccctcttgcaaaggcgtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905393 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

198

Amino Acids

22.11

Weight (kDa)

10.0

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18550 AT3G18550 AT3G18550 AT3G18550
fragaria_vesca	FvH4_5g12710
malus_domestica	MD06G1211100.v1.1 MD14G1221800.v1.1
prunus_persica	Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1
pyrus_communis	pycom06g18840 pycom14g18340
rosa_chinensis	RchiOBHm_Chr7g0184601
rosa_laevigata	RLG00000004965
rosa_multiflora	Rmu_co8093794.1_g000001 Rmu_ssc0000289.1_g000032 Rmu_ssc0000289.1_g000033
rosa_roxburghii	Rroxscaffold_3G00269490
rosa_samantha	Rh7AG079000 Rh7BG068300 Rh7CG069100 Rh7DG068400
rosa_wichuraiana	Rw7G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	394
AccII	CGCG	1 cut(s)	472
AciI	CCGC	2 cut(s)	392, 395
AclWI	GGATC	2 cut(s)	135, 541
AcyI	GRCGYC	1 cut(s)	592
AfaI	GTAC	2 cut(s)	42, 459
AfiI	CCNNNNNNNGG	1 cut(s)	530
AgeI	ACCGGT	1 cut(s)	37
AluBI	AGCT	2 cut(s)	325, 377
AluI	AGCT	2 cut(s)	325, 377
AlwI	GGATC	2 cut(s)	135, 541
AlwNI	CAGNNNCTG	1 cut(s)	325
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	1 cut(s)	284
ArsI	GACNNNNNNTTYG	2 cut(s)	530, 562
AsiGI	ACCGGT	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	171, 210
AsuHPI	GGTGA	2 cut(s)	108, 124
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	171, 210
BccI	CCATC	1 cut(s)	11
BciVI	GTATCC	1 cut(s)	462
BclI	TGATCA	1 cut(s)	87
BfaI	CTAG	2 cut(s)	380, 410
BfuAI	ACCTGC	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	462
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
Bme18I	GGWCC	2 cut(s)	171, 210
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	171, 210
BmiI	GGNNCC	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	592
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	3 cut(s)	37, 212, 454
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse118I	RCCGGY	2 cut(s)	37, 173
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	427, 505
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMII	CTCAG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	472
BshFI	GGCC	1 cut(s)	286
BshTI	ACCGGT	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	5 cut(s)	38, 174, 213, 455, 501
BslFI	GGGAC	2 cut(s)	213, 223
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmFI	GGGAC	2 cut(s)	213, 223
BsnI	GGCC	1 cut(s)	286
BsoBI	CYCGRG	1 cut(s)	197
Bsp143I	GATC	5 cut(s)	87, 98, 140, 157, 533
Bsp68I	TCGCGA	1 cut(s)	472
BspACI	CCGC	2 cut(s)	392, 395
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	472
BspLI	GGNNCC	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	2 cut(s)	135, 541
BsrFI	RCCGGY	2 cut(s)	37, 173
BssAI	RCCGGY	2 cut(s)	37, 173
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	5 cut(s)	87, 98, 140, 157, 533
BssNI	GRCGYC	1 cut(s)	592
Bst4CI	ACNGT	3 cut(s)	297, 358, 546
Bst6I	CTCTTC	2 cut(s)	516, 556
BstACI	GRCGYC	1 cut(s)	592
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	427, 505
BstFNI	CGCG	1 cut(s)	472
BstKTI	GATC	5 cut(s)	90, 101, 143, 160, 536
BstMBI	GATC	5 cut(s)	87, 98, 140, 157, 533
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 267, 400
BstNSI	RCATGY	1 cut(s)	270
BstUI	CGCG	1 cut(s)	472
BstX2I	RGATCY	2 cut(s)	140, 157
BstYI	RGATCY	2 cut(s)	140, 157
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	427, 505
BtsI	GCAGTG	2 cut(s)	50, 191
BtsIMutI	CAGTG	2 cut(s)	50, 191
BtuMI	TCGCGA	1 cut(s)	472
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	288
CaiI	CAGNNNCTG	1 cut(s)	325
Cfr10I	RCCGGY	2 cut(s)	37, 173
Cfr13I	GGNCC	2 cut(s)	171, 210
CseI	GACGC	1 cut(s)	581
Csp6I	GTAC	2 cut(s)	41, 458
CspAI	ACCGGT	1 cut(s)	37
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	6 cut(s)	275, 286, 325, 377, 415, 500
CviKI_1	RGCY	6 cut(s)	275, 286, 325, 377, 415, 500
CviQI	GTAC	2 cut(s)	41, 458
DdeI	CTNAG	1 cut(s)	205
DpnI	GATC	5 cut(s)	89, 100, 142, 159, 535
DpnII	GATC	5 cut(s)	87, 98, 140, 157, 533
Eam1104I	CTCTTC	2 cut(s)	516, 556
EarI	CTCTTC	2 cut(s)	516, 556
Eco47I	GGWCC	2 cut(s)	171, 210
Eco88I	CYCGRG	1 cut(s)	197
FaeI	CATG	1 cut(s)	270
FaiI	YATR	2 cut(s)	268, 433
FaqI	GGGAC	2 cut(s)	213, 223
FatI	CATG	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	2 cut(s)	414, 492
Fsp4HI	GCNGC	1 cut(s)	395
FspBI	CTAG	2 cut(s)	380, 410
GluI	GCNGC	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	5 cut(s)	38, 174, 213, 455, 501
HgaI	GACGC	1 cut(s)	581
Hin1I	GRCGYC	1 cut(s)	592
Hin1II	CATG	1 cut(s)	270
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	5 cut(s)	38, 174, 213, 455, 501
HphI	GGTGA	2 cut(s)	108, 124
Hpy188I	TCNGA	4 cut(s)	35, 362, 438, 533
Hpy188III	TCNNGA	3 cut(s)	144, 333, 471
HpyAV	CCTTC	2 cut(s)	103, 162
HpyCH4III	ACNGT	3 cut(s)	297, 358, 546
HpyCH4V	TGCA	4 cut(s)	164, 261, 568, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 267, 400
HpyF3I	CTNAG	1 cut(s)	205
Hsp92I	GRCGYC	1 cut(s)	592
Hsp92II	CATG	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	5 cut(s)	87, 98, 140, 157, 533
LmnI	GCTCC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	380, 410
MalI	GATC	5 cut(s)	89, 100, 142, 159, 535
MboI	GATC	5 cut(s)	87, 98, 140, 157, 533
MboII	GAAGA	5 cut(s)	167, 503, 506, 509, 573
MflI	RGATCY	2 cut(s)	140, 157
MnlI	CCTC	8 cut(s)	56, 60, 193, 200, 241, 459, 519, 590
MseI	TTAA	1 cut(s)	575
MspI	CCGG	5 cut(s)	38, 174, 213, 455, 501
MvnI	CGCG	1 cut(s)	472
MwoI	GCNNNNNNNGC	3 cut(s)	188, 267, 400
NdeII	GATC	5 cut(s)	87, 98, 140, 157, 533
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	211
NmeAIII	GCCGAG	1 cut(s)	251
NruI	TCGCGA	1 cut(s)	472
NspI	RCATGY	1 cut(s)	270
PaqCI	CACCTGC	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	73
PinAI	ACCGGT	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	171, 210
PstNI	CAGNNNCTG	1 cut(s)	325
PsuI	RGATCY	2 cut(s)	140, 157
RruI	TCGCGA	1 cut(s)	472
RsaI	GTAC	2 cut(s)	42, 459
RsaNI	GTAC	2 cut(s)	41, 458
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	5 cut(s)	87, 98, 140, 157, 533
Sau96I	GGNCC	2 cut(s)	171, 210
SetI	ASST	7 cut(s)	95, 114, 327, 379, 408, 470, 497
SinI	GGWCC	2 cut(s)	171, 210
SsiI	CCGC	2 cut(s)	392, 395
SspMI	CTAG	2 cut(s)	380, 410
TaaI	ACNGT	3 cut(s)	297, 358, 546
TaqI	TCGA	1 cut(s)	233
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	2 cut(s)	57, 198
TspDTI	ATGAA	1 cut(s)	367
TspRI	CASTG	2 cut(s)	57, 198
VpaK11BI	GGWCC	2 cut(s)	171, 210
XceI	RCATGY	1 cut(s)	270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	294
XspI	CTAG	2 cut(s)	380, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.