FvH4_5g12710
TCP Family

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
7170250 .. 7173614
3365 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12710.t1

Sequence Viewer

Length: 1356 bp
ATGTTTCCTTATAGCTCAAACGTTTTTAGCACTGGTACTACTGGGAATTACAGTTACTACGAACCAGCCGCTTTTGCTCATGACCAACCCTTTTCGATCCAAGGTAGACCTTTTCTTAATGACCTTACTATCAATCCAAACTGCAATTTCGCTTCAGTTGTTTCCGGTTCCAAACAAGATCAAGATCTACTAGAAAACACTCATCATCATATGCATCCTCCTTTGTCTTTCGTCTACTTCCCCTCTCCCTTGGAAGACGACGATGTTTTACTCCACCACCACCACCACCATGAGCTCTTGTCGCTTCATGAAAACACCTTATCAGCCAGTCATCATCACCATCATCAAACCGGTACTCCTCTCACTGCTATGGTCGAGTGGGATTCGAACAAAGATGATCAGTTGCTAATCATGAGTAAGGAAGGTGAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAGATATTGATCCCGACGGCGAGAAGATCTTGCAAGAAGGACCGGCACAGCAAGATTAGAACCGCCCGAGGACTGAGGGACCGGAGAATGAGATTGTCCCTGGATGTTGCCAGAAATTTCTTTGGTTTGCAAGACATGCTCGGCTTTGACAAGGCCAGCAAGACCGTGGCGTGGTTGCTCAACAAGGCAGGACCTGAAATCGGGAAAGTAAGAGAAATGAGCGGTCAGAACGAAAACCAGAGCTCAGTTTCTGATTGTGAAGTTGTATCTGGCACCGATGAGGCTGCAACTGATGAAATTATTGATAAGATAAGCCGAAAACCCTCTTCATCGTCTTGCGCTAACAATCGGATCAAAAGGACTGTCAGGCAACCAAAGAAGAGTGCATTTTTTAACCCTCTTGCAAAGGCGTCAAGGGTTAAGGCAAGAGCACGAGCCAAAGAAAGAACGAGAGAAAAGATGGAGCGACGACAGCCAAAGCCATGTGATGATGTTGATCAGGCAAAGAAGATGGAGCTGGACCTGAGCCAATTAAGTTCTTGGAGTACATTTCAAACCGGAGAAGAATCTGGAGGGACTCAAAGCCACAACAACTTGAACAATCAATCTTCATTGGAAGTACTTGCTGAGGAAGAGCCAATGAGCAACTTCCAAGCAGCTGGGGCTGCAGGAGTAGTTCATCAAGACTTGATTGAAATTGACGGCCATGATGCTGCAGCTAACTTGGTGACAATGGGAAAGTGGAGCTCCTCTTCCATTTTCCATTCTCTGCAAAACACTTCTGCATCAATTTCACAAGAGCAACATCAGTTTGCAAACTCTCAGTTCTATGGAAAACCATGGGAGGTCTACAACAGTAGTACTCATAATGGATTTTAA

Protein Analysis

452

Amino Acids

50.83

Weight (kDa)

6.47

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 170 - 315 1.2e-42 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 749
AccBSI CCGCTC 1 cut(s) 699
AccI GTMKAC 3 cut(s) 106, 234, 1326
AciI CCGC 3 cut(s) 69, 540, 699
AclI AACGTT 1 cut(s) 21
AclWI GGATC 3 cut(s) 91, 481, 836
AcoI YGGCCR 1 cut(s) 1180
AcsI RAATTY 1 cut(s) 592
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 887
AfaI GTAC 5 cut(s) 37, 355, 1024, 1098, 1339
AfiI CCNNNNNNNGG 2 cut(s) 648, 677
AgeI ACCGGT 1 cut(s) 350
AgsI TTSAA 3 cut(s) 1031, 1075, 1172
AjnI CCWGG 1 cut(s) 576
AluBI AGCT 7 cut(s) 15, 295, 720, 994, 1136, 1196, 1224
AluI AGCT 7 cut(s) 15, 295, 720, 994, 1136, 1196, 1224
Alw21I GWGCWC 4 cut(s) 297, 722, 910, 1226
AlwI GGATC 3 cut(s) 91, 481, 836
AlwNI CAGNNNCTG 2 cut(s) 671, 728
Ama87I CYCGRG 1 cut(s) 543
AoxI GGCC 2 cut(s) 630, 1180
ApoI RAATTY 1 cut(s) 592
ArsI GACNNNNNNTTYG 2 cut(s) 825, 857
AsiGI ACCGGT 1 cut(s) 350
AspLEI GCGC 1 cut(s) 818
AspS9I GGNCC 4 cut(s) 517, 556, 668, 997
AsuHPI GGTGA 3 cut(s) 329, 437, 1216
AsuII TTCGAA 1 cut(s) 386
AvaI CYCGRG 1 cut(s) 543
AvaII GGWCC 4 cut(s) 517, 556, 668, 997
BanI GGYRCC 1 cut(s) 749
BanII GRGCYC 3 cut(s) 297, 722, 1226
BauI CACGAG 1 cut(s) 909
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 4 cut(s) 297, 722, 910, 1226
BbvCI CCTCAGC 1 cut(s) 1104
BccI CCATC 3 cut(s) 348, 931, 982
BceAI ACGGC 2 cut(s) 510, 1195
BcgI CGANNNNNNTGC 2 cut(s) 743, 777
BciT130I CCWGG 1 cut(s) 578
BclI TGATCA 2 cut(s) 397, 973
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 2 cut(s) 1143, 1191
BglII AGATCT 2 cut(s) 184, 503
BmcAI AGTACT 2 cut(s) 1098, 1339
Bme1390I CCNGG 1 cut(s) 578
Bme18I GGWCC 4 cut(s) 517, 556, 668, 997
BmeT110I CYCGRG 1 cut(s) 543
BmgT120I GGNCC 4 cut(s) 517, 556, 668, 997
BmiI GGNNCC 3 cut(s) 169, 557, 751
BmrFI CCNGG 1 cut(s) 578
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 3 cut(s) 223, 1177, 1271
BmuI ACTGGG 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 1068
Bpu10I CCTNAGC 2 cut(s) 1001, 1104
Bpu14I TTCGAA 1 cut(s) 386
BsaBI GATNNNNATC 3 cut(s) 183, 485, 972
BsaHI GRCGYC 1 cut(s) 887
BsaJI CCNNGG 6 cut(s) 100, 249, 544, 576, 642, 1316
BsaWI WCCGGW 4 cut(s) 164, 350, 558, 1034
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bsc4I CCNNNNNNNGG 2 cut(s) 648, 677
Bse118I RCCGGY 2 cut(s) 350, 519
Bse1I ACTGG 3 cut(s) 37, 46, 327
Bse8I GATNNNNATC 3 cut(s) 183, 485, 972
BseBI CCWGG 1 cut(s) 578
BseDI CCNNGG 6 cut(s) 100, 249, 544, 576, 642, 1316
BseGI GGATG 2 cut(s) 214, 586
BseJI GATNNNNATC 3 cut(s) 183, 485, 972
BseLI CCNNNNNNNGG 2 cut(s) 648, 677
BseMII CTCAG 5 cut(s) 542, 735, 992, 1095, 1313
BseNI ACTGG 3 cut(s) 37, 46, 327
BseRI GAGGAG 2 cut(s) 348, 1216
BseYI CCCAGC 1 cut(s) 1136
BshFI GGCC 2 cut(s) 632, 1182
BshNI GGYRCC 1 cut(s) 749
BshTI ACCGGT 1 cut(s) 350
BsiHKAI GWGCWC 4 cut(s) 297, 722, 910, 1226
BsiHKCI CYCGRG 1 cut(s) 543
BsiSI CCGG 5 cut(s) 165, 351, 520, 559, 1035
BslFI GGGAC 3 cut(s) 559, 569, 1066
BslI CCNNNNNNNGG 2 cut(s) 648, 677
BsmFI GGGAC 3 cut(s) 559, 569, 1066
BsnI GGCC 2 cut(s) 632, 1182
BsoBI CYCGRG 1 cut(s) 543
Bsp119I TTCGAA 1 cut(s) 386
Bsp1286I GDGCHC 4 cut(s) 297, 722, 910, 1226
Bsp143I GATC 8 cut(s) 96, 178, 184, 397, 486, 503, 828, 973
Bsp19I CCATGG 1 cut(s) 1316
BspACI CCGC 3 cut(s) 69, 540, 699
BspANI GGCC 2 cut(s) 632, 1182
BspCNI CTCAG 5 cut(s) 543, 734, 993, 1096, 1312
BspHI TCATGA 3 cut(s) 79, 307, 411
BspLI GGNNCC 3 cut(s) 169, 557, 751
BspMAI CTGCAG 2 cut(s) 1147, 1195
BspPI GGATC 3 cut(s) 91, 481, 836
BspQI GCTCTTC 1 cut(s) 1104
BspT104I TTCGAA 1 cut(s) 386
BspT107I GGYRCC 1 cut(s) 749
BsrBI CCGCTC 1 cut(s) 699
BsrFI RCCGGY 2 cut(s) 350, 519
BsrI ACTGG 3 cut(s) 37, 46, 327
BssAI RCCGGY 2 cut(s) 350, 519
BssECI CCNNGG 6 cut(s) 100, 249, 544, 576, 642, 1316
BssMI GATC 8 cut(s) 96, 178, 184, 397, 486, 503, 828, 973
BssNI GRCGYC 1 cut(s) 887
BssSI CACGAG 1 cut(s) 909
BssT1I CCWWGG 3 cut(s) 100, 249, 1316
Bst2BI CACGAG 1 cut(s) 909
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 4 cut(s) 53, 643, 841, 1334
Bst6I CTCTTC 4 cut(s) 808, 851, 1104, 1234
BstACI GRCGYC 1 cut(s) 887
BstAPI GCANNNNNTGC 1 cut(s) 613
BstBI TTCGAA 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 634
BstDEI CTNAG 5 cut(s) 551, 721, 1001, 1104, 1299
BstDSI CCRYGG 2 cut(s) 642, 1316
BstF5I GGATG 2 cut(s) 214, 586
BstHHI GCGC 1 cut(s) 818
BstKTI GATC 8 cut(s) 99, 181, 187, 400, 489, 506, 831, 976
BstMBI GATC 8 cut(s) 96, 178, 184, 397, 486, 503, 828, 973
BstNI CCWGG 1 cut(s) 578
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 1 cut(s) 576
BstSFI CTRYAG 2 cut(s) 1143, 1191
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 184, 503
BstXI CCANNNNNNTGG 1 cut(s) 1136
BstYI RGATCY 2 cut(s) 184, 503
BsuRI GGCC 2 cut(s) 632, 1182
BtgI CCRYGG 2 cut(s) 642, 1316
BtsCI GGATG 2 cut(s) 214, 586
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 2 cut(s) 30, 363
Cac8I GCNNGC 1 cut(s) 634
CaiI CAGNNNCTG 2 cut(s) 671, 728
CciI TCATGA 3 cut(s) 79, 307, 411
CfoI GCGC 1 cut(s) 818
Cfr10I RCCGGY 2 cut(s) 350, 519
Cfr13I GGNCC 4 cut(s) 517, 556, 668, 997
CseI GACGC 1 cut(s) 876
Csp6I GTAC 5 cut(s) 36, 354, 1023, 1097, 1338
CspAI ACCGGT 1 cut(s) 350
CviAII CATG 8 cut(s) 80, 290, 308, 412, 613, 960, 1184, 1317
CviQI GTAC 5 cut(s) 36, 354, 1023, 1097, 1338
DdeI CTNAG 5 cut(s) 551, 721, 1001, 1104, 1299
DpnI GATC 8 cut(s) 98, 180, 186, 399, 488, 505, 830, 975
DpnII GATC 8 cut(s) 96, 178, 184, 397, 486, 503, 828, 973
EaeI YGGCCR 1 cut(s) 1180
Eam1104I CTCTTC 4 cut(s) 808, 851, 1104, 1234
EarI CTCTTC 4 cut(s) 808, 851, 1104, 1234
Ecl136II GAGCTC 3 cut(s) 295, 720, 1224
Eco130I CCWWGG 3 cut(s) 100, 249, 1316
Eco24I GRGCYC 3 cut(s) 297, 722, 1226
Eco47I GGWCC 4 cut(s) 517, 556, 668, 997
Eco53kI GAGCTC 3 cut(s) 295, 720, 1224
Eco57I CTGAAG 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 543
EcoICRI GAGCTC 3 cut(s) 295, 720, 1224
EcoO109I RGGNCCY 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 576
EcoT14I CCWWGG 3 cut(s) 100, 249, 1316
EcoT22I ATGCAT 1 cut(s) 216
EcoT38I GRGCYC 3 cut(s) 297, 722, 1226
ErhI CCWWGG 3 cut(s) 100, 249, 1316
FaeI CATG 8 cut(s) 83, 293, 311, 415, 616, 963, 1187, 1320
FaqI GGGAC 3 cut(s) 559, 569, 1066
FatI CATG 8 cut(s) 79, 289, 307, 411, 612, 959, 1183, 1316
FauNDI CATATG 1 cut(s) 210
FbaI TGATCA 2 cut(s) 397, 973
FblI GTMKAC 3 cut(s) 106, 234, 1326
FokI GGATG 2 cut(s) 201, 593
FriOI GRGCYC 3 cut(s) 297, 722, 1226
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 817
GsaI CCCAGC 1 cut(s) 1140
GsuI CTGGAG 1 cut(s) 1068
HaeIII GGCC 2 cut(s) 632, 1182
HapII CCGG 5 cut(s) 165, 351, 520, 559, 1035
HgaI GACGC 1 cut(s) 876
HhaI GCGC 1 cut(s) 818
Hin1I GRCGYC 1 cut(s) 887
Hin1II CATG 8 cut(s) 83, 293, 311, 415, 616, 963, 1187, 1320
Hin6I GCGC 1 cut(s) 816
HinP1I GCGC 1 cut(s) 816
HinfI GANTC 3 cut(s) 383, 1043, 1054
HpaII CCGG 5 cut(s) 165, 351, 520, 559, 1035
HphI GGTGA 3 cut(s) 329, 437, 1216
Hpy166II GTNNAC 3 cut(s) 107, 235, 1327
Hpy188I TCNGA 3 cut(s) 705, 730, 828
Hpy188III TCNNGA 8 cut(s) 80, 182, 308, 412, 490, 679, 1047, 1160
Hpy8I GTNNAC 3 cut(s) 107, 235, 1327
Hpy99I CGWCG 3 cut(s) 263, 496, 948
HpyAV CCTTC 2 cut(s) 416, 508
HpyCH4III ACNGT 4 cut(s) 53, 643, 841, 1334
HpyCH4IV ACGT 1 cut(s) 21
HpyF3I CTNAG 5 cut(s) 551, 721, 1001, 1104, 1299
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 887
Hsp92II CATG 8 cut(s) 83, 293, 311, 415, 616, 963, 1187, 1320
HspAI GCGC 1 cut(s) 816
Ksp22I TGATCA 2 cut(s) 397, 973
Kzo9I GATC 8 cut(s) 96, 178, 184, 397, 486, 503, 828, 973
LguI GCTCTTC 1 cut(s) 1104
LmnI GCTCC 4 cut(s) 940, 991, 1221, 1229
LweI GCATC 3 cut(s) 223, 1177, 1271
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 53, 1204
MalI GATC 8 cut(s) 98, 180, 186, 399, 488, 505, 830, 975
MbiI CCGCTC 1 cut(s) 699
MboI GATC 8 cut(s) 96, 178, 184, 397, 486, 503, 828, 973
MboII GAAGA 9 cut(s) 266, 513, 795, 868, 997, 1052, 1077, 1121, 1221
MflI RGATCY 2 cut(s) 184, 503
MhlI GDGCHC 4 cut(s) 297, 722, 910, 1226
MluCI AATT 7 cut(s) 46, 145, 592, 774, 1007, 1173, 1266
MlyI GAGTC 1 cut(s) 1048
Mph1103I ATGCAT 1 cut(s) 216
MseI TTAA 5 cut(s) 117, 870, 897, 1010, 1354
MslI CAYNNNNRTG 2 cut(s) 288, 368
MspA1I CMGCKG 1 cut(s) 1136
MspI CCGG 5 cut(s) 165, 351, 520, 559, 1035
MspR9I CCNGG 1 cut(s) 578
MvaI CCWGG 1 cut(s) 578
NcoI CCATGG 1 cut(s) 1316
NdeI CATATG 1 cut(s) 210
NdeII GATC 8 cut(s) 96, 178, 184, 397, 486, 503, 828, 973
NlaIII CATG 8 cut(s) 83, 293, 311, 415, 616, 963, 1187, 1320
NlaIV GGNNCC 3 cut(s) 169, 557, 751
NmeAIII GCCGAG 1 cut(s) 597
NmuCI GTSAC 1 cut(s) 1204
NsiI ATGCAT 1 cut(s) 216
NspI RCATGY 1 cut(s) 616
NspV TTCGAA 1 cut(s) 386
PagI TCATGA 3 cut(s) 79, 307, 411
PciSI GCTCTTC 1 cut(s) 1104
PfeI GAWTC 2 cut(s) 383, 1043
PinAI ACCGGT 1 cut(s) 350
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
PpuMI RGGWCCY 1 cut(s) 668
Psp124BI GAGCTC 3 cut(s) 297, 722, 1226
Psp1406I AACGTT 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 576
PspFI CCCAGC 1 cut(s) 1136
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 3 cut(s) 169, 557, 751
PspPI GGNCC 4 cut(s) 517, 556, 668, 997
PspPPI RGGWCCY 1 cut(s) 668
PstI CTGCAG 2 cut(s) 1147, 1195
PstNI CAGNNNCTG 2 cut(s) 671, 728
PsuI RGATCY 2 cut(s) 184, 503
PvuII CAGCTG 1 cut(s) 1136
RsaI GTAC 5 cut(s) 37, 355, 1024, 1098, 1339
RsaNI GTAC 5 cut(s) 36, 354, 1023, 1097, 1338
RseI CAYNNNNRTG 2 cut(s) 288, 368
SacI GAGCTC 3 cut(s) 297, 722, 1226
SapI GCTCTTC 1 cut(s) 1104
SaqAI TTAA 5 cut(s) 117, 870, 897, 1010, 1354
Sau3AI GATC 8 cut(s) 96, 178, 184, 397, 486, 503, 828, 973
Sau96I GGNCC 4 cut(s) 517, 556, 668, 997
ScaI AGTACT 2 cut(s) 1098, 1339
SchI GAGTC 1 cut(s) 1048
ScrFI CCNGG 1 cut(s) 578
SduI GDGCHC 4 cut(s) 297, 722, 910, 1226
SfaNI GCATC 3 cut(s) 223, 1177, 1271
SfcI CTRYAG 2 cut(s) 1143, 1191
SfuI TTCGAA 1 cut(s) 386
SinI GGWCC 4 cut(s) 517, 556, 668, 997
SmiMI CAYNNNNRTG 2 cut(s) 288, 368
Sse9I AATT 7 cut(s) 46, 145, 592, 774, 1007, 1173, 1266
SsiI CCGC 3 cut(s) 69, 540, 699
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 3 cut(s) 297, 722, 1226
StyD4I CCNGG 1 cut(s) 576
StyI CCWWGG 3 cut(s) 100, 249, 1316
TaaI ACNGT 4 cut(s) 53, 643, 841, 1334
TaiI ACGT 1 cut(s) 24
TaqI TCGA 3 cut(s) 95, 375, 386
TasI AATT 7 cut(s) 46, 145, 592, 774, 1007, 1173, 1266
TatI WGTACW 3 cut(s) 1022, 1096, 1337
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 2 cut(s) 383, 1043
Tru1I TTAA 5 cut(s) 117, 870, 897, 1010, 1354
Tru9I TTAA 5 cut(s) 117, 870, 897, 1010, 1354
TscAI CASTG 2 cut(s) 37, 370
TseFI GTSAC 1 cut(s) 1204
Tsp45I GTSAC 1 cut(s) 1204
TspDTI ATGAA 6 cut(s) 296, 324, 786, 795, 1077, 1145
TspRI CASTG 2 cut(s) 37, 370
VpaK11BI GGWCC 4 cut(s) 517, 556, 668, 997
XapI RAATTY 1 cut(s) 592
XceI RCATGY 1 cut(s) 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XmiI GTMKAC 3 cut(s) 106, 234, 1326
XspI CTAG 1 cut(s) 191
ZrmI AGTACT 2 cut(s) 1098, 1339
Zsp2I ATGCAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.