MD06G1211100.v1.1
TCP Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
34380518 .. 34383361
2844 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1211100.v1.1.491

Sequence Viewer

Length: 1368 bp
ATGTTTCCCTCACACAACAACAATCTTAACGAATTAGTACCCGTGTCTTATCCTCATGTCGATCAATCAATTTTCCATAGCTGGCCATCTTACCATGACAATTCTACATTAACTCCCAATTCCCTTACTATTCTCAACCCCAATCCCAACTCCAGGCAACAAGAAGGAGGAGAAGAAAACCTTCATCAACAACATCATCACCTTCCCTTTTCTTTGCTCTACTTCCCCTCTCCGTTTGAAGACGACGACGTTTTACTCTTTGATCAGCAACACCATCACCAAGAACCTGACCATATTGAGCTTTCAATTCACGAGTCTCAAGAACCACTTTATTTTATGAAGGAAGCTGCTGCTGCTGCTGCCGCTGATGACAACACCGTAGTAGGCAATGATCATCAGAAGACCACTACTACTAGTGTTAATAGAAAAATGGTGGATTGGGATTCCAACAAAAAGGGCCATCGCATGAACATGGATGATCAGCCGCAGATCCCGAGAAAGAGGACTAGCAAGAGAGATCGCCACAGCAAGATCAACACTGCCCGAGGCCCCAGGGACCGTAGGATGAGATTGTCCCTCGAAGTTGCCCTTAAGTTCTTTGGCTTGCAAGACGCGTTGGGGTTTGACAAGCCCAGCAAAACCGTGGAGTGGTTGCTCATTCAGTCGGAACCTGCAATTAAGAAACTATCAAGAGATCATCATCGACAATTCAACTACAAACACATGGTGAGATGTGCAAAATCCACATCTCCAGCTACTTCGGAGTCGTGCGAAGTGCTATCAGGCGTCGATGAGGCTCCAACAAACGTTAACATTAGTATTAATGGTAAAGTAAGAAGCCGCGGGATCAAACCCTCGGCCAAAGAGAGAAAGTTTGTCCACAGGCAATCAAGGAAGAGCGCATTTCACCCTCTTGCAAAGGCTTCGAGGGAAAAGGCAAGGGCAAGGGCGAGGGAAAGAACAAGAGAAAAGATGCAGAGGTCAAAGAAGCCTAGTAATGATCAGGCAAATTCAAGCCGTTTGAGTTCTTGGAACCCATTTGAAACTGAGGAAGAATCACCAGCTCACAACAACAATATGAACAGTACTACTAATGATCAGCCCAATTCAAGGGCGGTGCTGCGAGATTACCCTGATGAGGTTCAAGAACCATTAAGCAGCCCCCAAGCCGGAAATATTCAAGACATGGTTGTTGATCATGGTACTACTCATGATGCTATGGTGGTACTGGGAAAGTGGAGTCCTCCTCCGGTTTTCACTCGTCTCCAGCAAAACACTGGAATTTCCCAAGAGCACCAACAGTTTGCAGACTTTCAATTCTTTGGCAAACCATGGGAGGTCGACAACAATACTCATAATCTATTCTAA

Protein Analysis

456

Amino Acids

52.17

Weight (kDa)

7.91

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 169 - 327 6.1e-46 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 679
AccI GTMKAC 1 cut(s) 1341
AccII CGCG 2 cut(s) 614, 843
AciI CCGC 5 cut(s) 363, 485, 841, 843, 1115
AclI AACGTT 1 cut(s) 807
AclWI GGATC 2 cut(s) 484, 854
AcoI YGGCCR 2 cut(s) 83, 858
AcsI RAATTY 2 cut(s) 1009, 1281
AcyI GRCGYC 1 cut(s) 786
AdeI CACNNNGTG 1 cut(s) 727
AfaI GTAC 4 cut(s) 39, 1087, 1204, 1227
AfiI CCNNNNNNNGG 5 cut(s) 153, 648, 1110, 1138, 1169
AflII CTTAAG 1 cut(s) 590
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 9 cut(s) 239, 306, 712, 1014, 1043, 1110, 1145, 1181, 1316
AhlI ACTAGT 1 cut(s) 413
AjnI CCWGG 2 cut(s) 152, 551
AluBI AGCT 5 cut(s) 81, 301, 347, 755, 1064
AluI AGCT 5 cut(s) 81, 301, 347, 755, 1064
Alw21I GWGCWC 1 cut(s) 1296
Alw26I GTCTC 2 cut(s) 321, 1268
AlwI GGATC 2 cut(s) 484, 854
Ama87I CYCGRG 2 cut(s) 493, 543
AoxI GGCC 4 cut(s) 83, 457, 547, 858
ApeKI GCWGC 7 cut(s) 347, 350, 353, 356, 359, 1120, 1158
ApoI RAATTY 2 cut(s) 1009, 1281
AseI ATTAAT 1 cut(s) 822
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 902
AspS9I GGNCC 3 cut(s) 457, 548, 556
AsuHPI GGTGA 5 cut(s) 191, 269, 739, 899, 1050
AvaI CYCGRG 2 cut(s) 493, 543
AvaII GGWCC 1 cut(s) 556
BalI TGGCCA 1 cut(s) 85
BauI CACGAG 1 cut(s) 311
BbsI GAAGAC 2 cut(s) 246, 407
Bbv12I GWGCWC 1 cut(s) 1296
BbvI GCAGC 7 cut(s) 334, 337, 340, 343, 346, 1107, 1170
BccI CCATC 3 cut(s) 94, 282, 468
BceAI ACGGC 1 cut(s) 1002
BcgI CGANNNNNNTGC 2 cut(s) 906, 940
BciT130I CCWGG 2 cut(s) 154, 553
BclI TGATCA 6 cut(s) 262, 391, 478, 1000, 1096, 1195
BcoDI GTCTC 2 cut(s) 321, 1268
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 3 cut(s) 414, 507, 993
BfrI CTTAAG 1 cut(s) 590
BfuAI ACCTGC 1 cut(s) 679
BmcAI AGTACT 1 cut(s) 1087
Bme1390I CCNGG 2 cut(s) 154, 553
Bme18I GGWCC 1 cut(s) 556
BmeT110I CYCGRG 2 cut(s) 493, 543
BmgT120I GGNCC 3 cut(s) 457, 548, 556
BmiI GGNNCC 5 cut(s) 550, 557, 669, 798, 1034
BmrFI CCNGG 2 cut(s) 154, 553
BmrI ACTGGG 1 cut(s) 1238
BmsI GCATC 2 cut(s) 963, 1204
BmuI ACTGGG 1 cut(s) 1238
BpiI GAAGAC 2 cut(s) 246, 407
BplI GAGNNNNNCTC 2 cut(s) 1231, 1263
BpmI CTGGAG 3 cut(s) 136, 735, 1250
BpuEI CTTGAG 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 699
BsaHI GRCGYC 1 cut(s) 786
BsaJI CCNNGG 7 cut(s) 544, 551, 552, 642, 841, 855, 1331
BsaWI WCCGGW 1 cut(s) 1249
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 5 cut(s) 153, 648, 1110, 1138, 1169
Bse1I ACTGG 2 cut(s) 1233, 1282
Bse3DI GCAATG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 699
BseBI CCWGG 2 cut(s) 154, 553
BseDI CCNNGG 7 cut(s) 544, 551, 552, 642, 841, 855, 1331
BseGI GGATG 2 cut(s) 481, 570
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 5 cut(s) 153, 648, 1110, 1138, 1169
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 1038
BseNI ACTGG 2 cut(s) 1233, 1282
BseRI GAGGAG 2 cut(s) 183, 1236
BseXI GCAGC 7 cut(s) 334, 337, 340, 343, 346, 1107, 1170
BseYI CCCAGC 1 cut(s) 632
Bsh1236I CGCG 2 cut(s) 614, 843
BshFI GGCC 4 cut(s) 85, 459, 549, 860
BsiHKAI GWGCWC 1 cut(s) 1296
BsiHKCI CYCGRG 2 cut(s) 493, 543
BsiSI CCGG 2 cut(s) 1170, 1250
BslFI GGGAC 2 cut(s) 559, 569
BslI CCNNNNNNNGG 5 cut(s) 153, 648, 1110, 1138, 1169
BsmAI GTCTC 2 cut(s) 321, 1268
BsmBI CGTCTC 1 cut(s) 1268
BsmFI GGGAC 2 cut(s) 559, 569
BsnI GGCC 4 cut(s) 85, 459, 549, 860
BsoBI CYCGRG 2 cut(s) 493, 543
Bsp1286I GDGCHC 1 cut(s) 1296
Bsp19I CCATGG 1 cut(s) 1331
BspACI CCGC 5 cut(s) 363, 485, 841, 843, 1115
BspANI GGCC 4 cut(s) 85, 459, 549, 860
BspCNI CTCAG 1 cut(s) 1039
BspFNI CGCG 2 cut(s) 614, 843
BspHI TCATGA 1 cut(s) 1210
BspLI GGNNCC 5 cut(s) 550, 557, 669, 798, 1034
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 2 cut(s) 484, 854
BspQI GCTCTTC 1 cut(s) 890
BspTI CTTAAG 1 cut(s) 590
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 2 cut(s) 1233, 1282
BssECI CCNNGG 7 cut(s) 544, 551, 552, 642, 841, 855, 1331
BssNI GRCGYC 1 cut(s) 786
BssSI CACGAG 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 1331
Bst2BI CACGAG 1 cut(s) 311
Bst2UI CCWGG 2 cut(s) 154, 553
Bst4CI ACNGT 5 cut(s) 379, 560, 643, 1085, 1302
Bst6I CTCTTC 1 cut(s) 890
BstACI GRCGYC 1 cut(s) 786
BstAFI CTTAAG 1 cut(s) 590
BstC8I GCNNGC 2 cut(s) 83, 605
BstDEI CTNAG 1 cut(s) 1047
BstDSI CCRYGG 3 cut(s) 642, 841, 1331
BstF5I GGATG 2 cut(s) 481, 570
BstFNI CGCG 2 cut(s) 614, 843
BstHHI GCGC 1 cut(s) 902
BstMAI GTCTC 2 cut(s) 321, 1268
BstMWI GCNNNNNNNGC 4 cut(s) 353, 356, 359, 362
BstNI CCWGG 2 cut(s) 154, 553
BstSCI CCNGG 2 cut(s) 152, 551
BstUI CGCG 2 cut(s) 614, 843
BstV1I GCAGC 7 cut(s) 334, 337, 340, 343, 346, 1107, 1170
BstV2I GAAGAC 2 cut(s) 246, 407
BstX2I RGATCY 1 cut(s) 489
BstYI RGATCY 1 cut(s) 489
BsuRI GGCC 4 cut(s) 85, 459, 549, 860
BtgI CCRYGG 3 cut(s) 642, 841, 1331
BtgZI GCGATG 1 cut(s) 446
BtsCI GGATG 2 cut(s) 481, 570
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 2 cut(s) 537, 1275
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 2 cut(s) 83, 605
CciI TCATGA 1 cut(s) 1210
CfoI GCGC 1 cut(s) 902
Cfr13I GGNCC 3 cut(s) 457, 548, 556
Cfr42I CCGCGG 1 cut(s) 844
CseI GACGC 2 cut(s) 620, 775
Csp6I GTAC 4 cut(s) 38, 1086, 1203, 1226
CviAII CATG 9 cut(s) 56, 95, 466, 472, 724, 1186, 1199, 1211, 1332
CviQI GTAC 4 cut(s) 38, 1086, 1203, 1226
DdeI CTNAG 1 cut(s) 1047
DraIII CACNNNGTG 1 cut(s) 727
EaeI YGGCCR 2 cut(s) 83, 858
Eam1104I CTCTTC 1 cut(s) 890
EarI CTCTTC 1 cut(s) 890
Eco130I CCWWGG 1 cut(s) 1331
Eco47I GGWCC 1 cut(s) 556
Eco88I CYCGRG 2 cut(s) 493, 543
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 152, 551
EcoT14I CCWWGG 1 cut(s) 1331
ErhI CCWWGG 1 cut(s) 1331
Esp3I CGTCTC 1 cut(s) 1268
FaeI CATG 9 cut(s) 59, 98, 469, 475, 727, 1189, 1202, 1214, 1335
FalI AAGNNNNNCTT 6 cut(s) 165, 197, 312, 344, 573, 605
FaqI GGGAC 2 cut(s) 559, 569
FatI CATG 9 cut(s) 55, 94, 465, 471, 723, 1185, 1198, 1210, 1331
FauI CCCGC 1 cut(s) 836
FbaI TGATCA 6 cut(s) 262, 391, 478, 1000, 1096, 1195
FblI GTMKAC 1 cut(s) 1341
FokI GGATG 2 cut(s) 488, 577
FspBI CTAG 3 cut(s) 414, 507, 993
GlaI GCGC 1 cut(s) 901
GsaI CCCAGC 1 cut(s) 636
GsuI CTGGAG 3 cut(s) 136, 735, 1250
HaeIII GGCC 4 cut(s) 85, 459, 549, 860
HapII CCGG 2 cut(s) 1170, 1250
HgaI GACGC 2 cut(s) 620, 775
HhaI GCGC 1 cut(s) 902
Hin1I GRCGYC 1 cut(s) 786
Hin1II CATG 9 cut(s) 59, 98, 469, 475, 727, 1189, 1202, 1214, 1335
Hin6I GCGC 1 cut(s) 900
HinP1I GCGC 1 cut(s) 900
HincII GTYRAC 2 cut(s) 811, 1342
HindII GTYRAC 2 cut(s) 811, 1342
HinfI GANTC 5 cut(s) 314, 443, 764, 1055, 1240
HpaI GTTAAC 1 cut(s) 811
HpaII CCGG 2 cut(s) 1170, 1250
HphI GGTGA 5 cut(s) 191, 269, 739, 899, 1050
Hpy166II GTNNAC 3 cut(s) 811, 880, 1342
Hpy188I TCNGA 3 cut(s) 399, 667, 763
Hpy188III TCNNGA 7 cut(s) 311, 320, 493, 690, 1145, 1181, 1211
Hpy8I GTNNAC 3 cut(s) 811, 880, 1342
Hpy99I CGWCG 3 cut(s) 248, 251, 791
HpyAV CCTTC 4 cut(s) 158, 191, 212, 334
HpyCH4III ACNGT 5 cut(s) 379, 560, 643, 1085, 1302
HpyCH4IV ACGT 2 cut(s) 249, 807
HpyCH4V TGCA 6 cut(s) 607, 674, 737, 917, 976, 1307
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 356, 359, 362
HpyF3I CTNAG 1 cut(s) 1047
HpySE526I ACGT 2 cut(s) 249, 807
Hsp92I GRCGYC 1 cut(s) 786
Hsp92II CATG 9 cut(s) 59, 98, 469, 475, 727, 1189, 1202, 1214, 1335
HspAI GCGC 1 cut(s) 900
Ksp22I TGATCA 6 cut(s) 262, 391, 478, 1000, 1096, 1195
KspAI GTTAAC 1 cut(s) 811
KspI CCGCGG 1 cut(s) 844
LguI GCTCTTC 1 cut(s) 890
LmnI GCTCC 1 cut(s) 802
Lsp1109I GCAGC 7 cut(s) 334, 337, 340, 343, 346, 1107, 1170
LweI GCATC 2 cut(s) 963, 1204
MaeI CTAG 3 cut(s) 414, 507, 993
MaeII ACGT 2 cut(s) 249, 807
MboII GAAGA 5 cut(s) 185, 251, 412, 907, 1064
MflI RGATCY 1 cut(s) 489
MhlI GDGCHC 1 cut(s) 1296
MlsI TGGCCA 1 cut(s) 85
MluI ACGCGT 1 cut(s) 612
MluNI TGGCCA 1 cut(s) 85
MlyI GAGTC 3 cut(s) 323, 773, 1249
MmeI TCCRAC 3 cut(s) 471, 645, 824
Mox20I TGGCCA 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 180
MscI TGGCCA 1 cut(s) 85
MseI TTAA 8 cut(s) 27, 110, 420, 591, 678, 810, 822, 1154
MslI CAYNNNNRTG 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 85
MspA1I CMGCKG 2 cut(s) 365, 843
MspCI CTTAAG 1 cut(s) 590
MspI CCGG 2 cut(s) 1170, 1250
MspR9I CCNGG 2 cut(s) 154, 553
MvaI CCWGG 2 cut(s) 154, 553
MvnI CGCG 2 cut(s) 614, 843
MwoI GCNNNNNNNGC 4 cut(s) 353, 356, 359, 362
NcoI CCATGG 1 cut(s) 1331
NlaIII CATG 9 cut(s) 59, 98, 469, 475, 727, 1189, 1202, 1214, 1335
NlaIV GGNNCC 5 cut(s) 550, 557, 669, 798, 1034
NmeAIII GCCGAG 1 cut(s) 836
PagI TCATGA 1 cut(s) 1210
PasI CCCWGGG 1 cut(s) 552
PciSI GCTCTTC 1 cut(s) 890
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 443, 1055
PleI GAGTC 3 cut(s) 322, 772, 1248
PpsI GAGTC 3 cut(s) 322, 772, 1248
PshBI ATTAAT 1 cut(s) 822
Psp1406I AACGTT 1 cut(s) 807
Psp6I CCWGG 2 cut(s) 152, 551
PspFI CCCAGC 1 cut(s) 632
PspGI CCWGG 2 cut(s) 152, 551
PspN4I GGNNCC 5 cut(s) 550, 557, 669, 798, 1034
PspPI GGNCC 3 cut(s) 457, 548, 556
PsuI RGATCY 1 cut(s) 489
RsaI GTAC 4 cut(s) 39, 1087, 1204, 1227
RsaNI GTAC 4 cut(s) 38, 1086, 1203, 1226
RseI CAYNNNNRTG 1 cut(s) 470
SacII CCGCGG 1 cut(s) 844
SalI GTCGAC 1 cut(s) 1340
SapI GCTCTTC 1 cut(s) 890
SaqAI TTAA 8 cut(s) 27, 110, 420, 591, 678, 810, 822, 1154
Sau96I GGNCC 3 cut(s) 457, 548, 556
ScaI AGTACT 1 cut(s) 1087
SchI GAGTC 3 cut(s) 323, 773, 1249
ScrFI CCNGG 2 cut(s) 154, 553
SduI GDGCHC 1 cut(s) 1296
SfaNI GCATC 2 cut(s) 963, 1204
Sfr303I CCGCGG 1 cut(s) 844
SgrBI CCGCGG 1 cut(s) 844
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 2 cut(s) 318, 590
SmoI CTYRAG 2 cut(s) 318, 590
SpeI ACTAGT 1 cut(s) 413
SsiI CCGC 5 cut(s) 363, 485, 841, 843, 1115
SspI AATATT 1 cut(s) 1177
SspMI CTAG 3 cut(s) 414, 507, 993
StyD4I CCNGG 2 cut(s) 152, 551
StyI CCWWGG 1 cut(s) 1331
TaaI ACNGT 5 cut(s) 379, 560, 643, 1085, 1302
TaiI ACGT 2 cut(s) 252, 810
TaqI TCGA 6 cut(s) 60, 579, 703, 789, 926, 1341
TatI WGTACW 1 cut(s) 1085
TauI GCSGC 3 cut(s) 365, 487, 843
TfiI GAWTC 2 cut(s) 443, 1055
Tru1I TTAA 8 cut(s) 27, 110, 420, 591, 678, 810, 822, 1154
Tru9I TTAA 8 cut(s) 27, 110, 420, 591, 678, 810, 822, 1154
TscAI CASTG 2 cut(s) 544, 1282
TseI GCWGC 7 cut(s) 347, 350, 353, 356, 359, 1120, 1158
TspDTI ATGAA 4 cut(s) 173, 353, 482, 1094
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 2 cut(s) 544, 1282
Vha464I CTTAAG 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 556
VspI ATTAAT 1 cut(s) 822
XapI RAATTY 2 cut(s) 1009, 1281
XcmI CCANNNNNNNNNTGG 2 cut(s) 640, 1274
XmiI GTMKAC 1 cut(s) 1341
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 3 cut(s) 414, 507, 993
ZrmI AGTACT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.