pycom06g18840
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0008501
Physical Location & Seq
Reverse (-)
22433836 .. 22435161
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g18840.1

Sequence Viewer

Length: 1326 bp
ATGTTTCCCTCACACAACAACAATCTTAACGAATTAGTACCCGTGTCTTATCCTCATGTCGATCAATCAATTTTCCATAGCTGGCCATTTCACCATGACAATTCTACATTAACTCCCAATTCCCTTACTATTCTCAACCCCAATCCCAACTCCAGGCAACAAGGAGGAGAAGAAAACCTTCATCAACAACATCAACACCTTCCTTTTTCTTTGCTCTACTTCCCCTCTCCGTTTGAAGACGACGACGTTTTACTCTTTGATCAGCAACACCATCACCAAGAACCTGACCATATTGAGCTTTCACTTCACGAGTCTCAAGAACCACCTTATTTTATGAAGGAAGCTGCTGCTGCTGCTGCTGCCGCTGATGACAACACCGTAGTAGGCAATGATCATCAGAAGATCACTACTACTAGTGTTAATAGAAAAATGGTGGACTGGGATTCCAACAAAAAGGGCCATCGCATGAACATGGATGATCAGCCGCAGATCCCGAGAAGGAGGACTTGCAAGAGAGATCGCCACAGCAAGATCAACACTGCCCGAGGCCCCAGGGACCGTAGGATGAGATTGTCCCTCGAAGTTGCCCTTAAGTTCTTTGGCTTGCAAGACGCGTTGGGGTTTGACAAGCCCAGCAAAACCGTGGAGTGGTTGCTCATTCAGTCGGAACCTGCAATCAAGAAACTATCAAGAGATCATCATCGACAATTCAACTACAAACACATGGTGAGATGTGCAAAAACCACATCTCCAGCTACTTCGGAGTCGTGCGAAGTGCTATCCGGCGTCGATGAGGCTCCAACAAACGTTAACATTAGTAGTAATGGTAAAGTAAGAAGCCGCGGGATCAAACCCTCAGCCAAAGAGAGAAAGATTGTCCACAGGCAATCAAGGAAGAGCGCATTTCACCCTCTTGCAAAGGCTTCCAGGGAAAACGCAAGGGCAAGGGCGAGGGAAAGAACAAGAGAAAAGATGCAGAGGTCAAAGAAGCCTAGTAATGATCAGGCAAATTCAAGCCGTTTGAGTTCTTGGAACCCATTTGAAACTGAGGAAGAATCACCAACTCACAACAACAATATGACCAGTACTACTAATGATCAGCCCAATTCAAGGGCGGTGCTGCGAGATTACCCTGATGAGGTTGAAGAACCATTAAGCAGCTCCCAAGCCGGAGATATTCAAGACATGGTTGTTGATCATGGTGCTACTCATGATGCTATGGTGGTACTGGGAAAGTGGAGTTCTCCTCCAGTTTTCACTCGTCTCCAGCAAAACACTGGAATTTCCCAAGAGGTAACTTCCACCACCAAGTTTCAACTTCTCTAA

Protein Analysis

442

Amino Acids

50.25

Weight (kDa)

8.33

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 170 - 327 4.9e-45 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 679
AccII CGCG 2 cut(s) 614, 843
AciI CCGC 5 cut(s) 363, 485, 841, 843, 1115
AclI AACGTT 1 cut(s) 807
AclWI GGATC 2 cut(s) 484, 854
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 2 cut(s) 1009, 1281
AcyI GRCGYC 1 cut(s) 786
AdeI CACNNNGTG 1 cut(s) 727
AfaI GTAC 3 cut(s) 39, 1087, 1227
AfiI CCNNNNNNNGG 4 cut(s) 153, 648, 1110, 1138
AflII CTTAAG 1 cut(s) 590
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 8 cut(s) 236, 712, 1014, 1043, 1110, 1145, 1181, 1316
AhlI ACTAGT 1 cut(s) 413
AjnI CCWGG 3 cut(s) 152, 551, 926
AluBI AGCT 5 cut(s) 81, 298, 344, 755, 1161
AluI AGCT 5 cut(s) 81, 298, 344, 755, 1161
Alw26I GTCTC 2 cut(s) 318, 1268
AlwI GGATC 2 cut(s) 484, 854
Ama87I CYCGRG 2 cut(s) 493, 543
AoxI GGCC 3 cut(s) 83, 457, 547
ApeKI GCWGC 8 cut(s) 344, 347, 350, 353, 356, 359, 1120, 1158
ApoI RAATTY 2 cut(s) 1009, 1281
Asp700I GAANNNNTTC 1 cut(s) 177
AspLEI GCGC 1 cut(s) 902
AspS9I GGNCC 3 cut(s) 457, 548, 556
AsuHPI GGTGA 5 cut(s) 83, 266, 739, 899, 1050
AvaI CYCGRG 2 cut(s) 493, 543
AvaII GGWCC 1 cut(s) 556
BalI TGGCCA 1 cut(s) 85
BauI CACGAG 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 856
BbvI GCAGC 8 cut(s) 331, 334, 337, 340, 343, 346, 1107, 1170
BccI CCATC 2 cut(s) 279, 468
BceAI ACGGC 1 cut(s) 1002
BciT130I CCWGG 3 cut(s) 154, 553, 928
BclI TGATCA 6 cut(s) 259, 391, 478, 1000, 1096, 1195
BcoDI GTCTC 2 cut(s) 318, 1268
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 2 cut(s) 414, 993
BfrI CTTAAG 1 cut(s) 590
BfuAI ACCTGC 1 cut(s) 679
BmcAI AGTACT 1 cut(s) 1087
Bme1390I CCNGG 3 cut(s) 154, 553, 928
Bme18I GGWCC 1 cut(s) 556
BmeT110I CYCGRG 2 cut(s) 493, 543
BmgT120I GGNCC 3 cut(s) 457, 548, 556
BmiI GGNNCC 5 cut(s) 550, 557, 669, 798, 1034
BmrFI CCNGG 3 cut(s) 154, 553, 928
BmrI ACTGGG 2 cut(s) 448, 1238
BmsI GCATC 2 cut(s) 963, 1204
BmuI ACTGGG 2 cut(s) 448, 1238
BpiI GAAGAC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 1231, 1263
BpmI CTGGAG 4 cut(s) 136, 735, 1233, 1250
Bpu10I CCTNAGC 1 cut(s) 856
BpuEI CTTGAG 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 699
BsaHI GRCGYC 1 cut(s) 786
BsaJI CCNNGG 6 cut(s) 544, 551, 552, 642, 841, 927
BsaXI ACNNNNNCTCC 4 cut(s) 97, 127, 733, 763
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 648, 1110, 1138
Bse1I ACTGG 5 cut(s) 443, 1083, 1233, 1250, 1282
Bse3DI GCAATG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 699
BseBI CCWGG 3 cut(s) 154, 553, 928
BseDI CCNNGG 6 cut(s) 544, 551, 552, 642, 841, 927
BseGI GGATG 2 cut(s) 481, 570
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 4 cut(s) 153, 648, 1110, 1138
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 2 cut(s) 870, 1038
BseNI ACTGG 5 cut(s) 443, 1083, 1233, 1250, 1282
BseRI GAGGAG 2 cut(s) 180, 1236
BseXI GCAGC 8 cut(s) 331, 334, 337, 340, 343, 346, 1107, 1170
BseYI CCCAGC 1 cut(s) 632
Bsh1236I CGCG 2 cut(s) 614, 843
BshFI GGCC 3 cut(s) 85, 459, 549
BsiHKCI CYCGRG 2 cut(s) 493, 543
BsiSI CCGG 2 cut(s) 783, 1170
BslFI GGGAC 2 cut(s) 559, 569
BslI CCNNNNNNNGG 4 cut(s) 153, 648, 1110, 1138
BsmAI GTCTC 2 cut(s) 318, 1268
BsmBI CGTCTC 1 cut(s) 1268
BsmFI GGGAC 2 cut(s) 559, 569
BsnI GGCC 3 cut(s) 85, 459, 549
BsoBI CYCGRG 2 cut(s) 493, 543
BspACI CCGC 5 cut(s) 363, 485, 841, 843, 1115
BspANI GGCC 3 cut(s) 85, 459, 549
BspCNI CTCAG 2 cut(s) 869, 1039
BspFNI CGCG 2 cut(s) 614, 843
BspHI TCATGA 1 cut(s) 1210
BspLI GGNNCC 5 cut(s) 550, 557, 669, 798, 1034
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 2 cut(s) 484, 854
BspQI GCTCTTC 1 cut(s) 890
BspTI CTTAAG 1 cut(s) 590
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 5 cut(s) 443, 1083, 1233, 1250, 1282
BssECI CCNNGG 6 cut(s) 544, 551, 552, 642, 841, 927
BssNI GRCGYC 1 cut(s) 786
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
Bst2UI CCWGG 3 cut(s) 154, 553, 928
Bst4CI ACNGT 3 cut(s) 379, 560, 643
Bst6I CTCTTC 1 cut(s) 890
BstACI GRCGYC 1 cut(s) 786
BstAFI CTTAAG 1 cut(s) 590
BstC8I GCNNGC 2 cut(s) 83, 605
BstDEI CTNAG 2 cut(s) 856, 1047
BstDSI CCRYGG 2 cut(s) 642, 841
BstF5I GGATG 2 cut(s) 481, 570
BstFNI CGCG 2 cut(s) 614, 843
BstHHI GCGC 1 cut(s) 902
BstMAI GTCTC 2 cut(s) 318, 1268
BstMWI GCNNNNNNNGC 5 cut(s) 350, 353, 356, 359, 362
BstNI CCWGG 3 cut(s) 154, 553, 928
BstSCI CCNGG 3 cut(s) 152, 551, 926
BstUI CGCG 2 cut(s) 614, 843
BstV1I GCAGC 8 cut(s) 331, 334, 337, 340, 343, 346, 1107, 1170
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 489
BstYI RGATCY 1 cut(s) 489
BsuRI GGCC 3 cut(s) 85, 459, 549
BtgI CCRYGG 2 cut(s) 642, 841
BtgZI GCGATG 1 cut(s) 446
BtsCI GGATG 2 cut(s) 481, 570
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 2 cut(s) 537, 1275
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 2 cut(s) 83, 605
CciI TCATGA 1 cut(s) 1210
CfoI GCGC 1 cut(s) 902
Cfr13I GGNCC 3 cut(s) 457, 548, 556
Cfr42I CCGCGG 1 cut(s) 844
CseI GACGC 2 cut(s) 620, 775
Csp6I GTAC 3 cut(s) 38, 1086, 1226
CviAII CATG 8 cut(s) 56, 95, 466, 472, 724, 1186, 1199, 1211
CviQI GTAC 3 cut(s) 38, 1086, 1226
DdeI CTNAG 2 cut(s) 856, 1047
DraIII CACNNNGTG 1 cut(s) 727
EaeI YGGCCR 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 890
EarI CTCTTC 1 cut(s) 890
Eco47I GGWCC 1 cut(s) 556
Eco88I CYCGRG 2 cut(s) 493, 543
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 3 cut(s) 152, 551, 926
Esp3I CGTCTC 1 cut(s) 1268
FaeI CATG 8 cut(s) 59, 98, 469, 475, 727, 1189, 1202, 1214
FalI AAGNNNNNCTT 6 cut(s) 162, 194, 490, 522, 573, 605
FaqI GGGAC 2 cut(s) 559, 569
FatI CATG 8 cut(s) 55, 94, 465, 471, 723, 1185, 1198, 1210
FauI CCCGC 1 cut(s) 836
FbaI TGATCA 6 cut(s) 259, 391, 478, 1000, 1096, 1195
FokI GGATG 2 cut(s) 488, 577
FspBI CTAG 2 cut(s) 414, 993
GlaI GCGC 1 cut(s) 901
GsaI CCCAGC 1 cut(s) 636
GsuI CTGGAG 4 cut(s) 136, 735, 1233, 1250
HaeIII GGCC 3 cut(s) 85, 459, 549
HapII CCGG 2 cut(s) 783, 1170
HgaI GACGC 2 cut(s) 620, 775
HhaI GCGC 1 cut(s) 902
Hin1I GRCGYC 1 cut(s) 786
Hin1II CATG 8 cut(s) 59, 98, 469, 475, 727, 1189, 1202, 1214
Hin6I GCGC 1 cut(s) 900
HinP1I GCGC 1 cut(s) 900
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HinfI GANTC 4 cut(s) 311, 443, 764, 1055
HpaI GTTAAC 1 cut(s) 811
HpaII CCGG 2 cut(s) 783, 1170
HphI GGTGA 5 cut(s) 83, 266, 739, 899, 1050
Hpy166II GTNNAC 3 cut(s) 436, 811, 880
Hpy188I TCNGA 3 cut(s) 399, 667, 763
Hpy188III TCNNGA 7 cut(s) 308, 317, 493, 679, 690, 1181, 1211
Hpy8I GTNNAC 3 cut(s) 436, 811, 880
Hpy99I CGWCG 3 cut(s) 245, 248, 791
HpyAV CCTTC 4 cut(s) 188, 209, 331, 492
HpyCH4III ACNGT 3 cut(s) 379, 560, 643
HpyCH4IV ACGT 2 cut(s) 246, 807
HpyCH4V TGCA 6 cut(s) 510, 607, 674, 737, 917, 976
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 353, 356, 359, 362
HpyF3I CTNAG 2 cut(s) 856, 1047
HpySE526I ACGT 2 cut(s) 246, 807
Hsp92I GRCGYC 1 cut(s) 786
Hsp92II CATG 8 cut(s) 59, 98, 469, 475, 727, 1189, 1202, 1214
HspAI GCGC 1 cut(s) 900
Ksp22I TGATCA 6 cut(s) 259, 391, 478, 1000, 1096, 1195
KspAI GTTAAC 1 cut(s) 811
KspI CCGCGG 1 cut(s) 844
LguI GCTCTTC 1 cut(s) 890
LmnI GCTCC 2 cut(s) 802, 1166
Lsp1109I GCAGC 8 cut(s) 331, 334, 337, 340, 343, 346, 1107, 1170
LweI GCATC 2 cut(s) 963, 1204
MaeI CTAG 2 cut(s) 414, 993
MaeII ACGT 2 cut(s) 246, 807
MaeIII GTNAC 1 cut(s) 1294
MboII GAAGA 6 cut(s) 182, 248, 412, 907, 1064, 1157
MflI RGATCY 1 cut(s) 489
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 8 cut(s) 32, 69, 100, 118, 707, 1009, 1105, 1281
MluI ACGCGT 1 cut(s) 612
MluNI TGGCCA 1 cut(s) 85
MlyI GAGTC 2 cut(s) 320, 773
MmeI TCCRAC 3 cut(s) 471, 645, 824
Mox20I TGGCCA 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 177
MscI TGGCCA 1 cut(s) 85
MseI TTAA 6 cut(s) 27, 110, 420, 591, 810, 1154
MslI CAYNNNNRTG 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 85
MspA1I CMGCKG 2 cut(s) 365, 843
MspCI CTTAAG 1 cut(s) 590
MspI CCGG 2 cut(s) 783, 1170
MspR9I CCNGG 3 cut(s) 154, 553, 928
MvaI CCWGG 3 cut(s) 154, 553, 928
MvnI CGCG 2 cut(s) 614, 843
MwoI GCNNNNNNNGC 5 cut(s) 350, 353, 356, 359, 362
NlaIII CATG 8 cut(s) 59, 98, 469, 475, 727, 1189, 1202, 1214
NlaIV GGNNCC 5 cut(s) 550, 557, 669, 798, 1034
PagI TCATGA 1 cut(s) 1210
PasI CCCWGGG 1 cut(s) 552
PciSI GCTCTTC 1 cut(s) 890
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 443, 1055
PleI GAGTC 2 cut(s) 319, 772
PpsI GAGTC 2 cut(s) 319, 772
Psp1406I AACGTT 1 cut(s) 807
Psp6I CCWGG 3 cut(s) 152, 551, 926
PspFI CCCAGC 1 cut(s) 632
PspGI CCWGG 3 cut(s) 152, 551, 926
PspN4I GGNNCC 5 cut(s) 550, 557, 669, 798, 1034
PspPI GGNCC 3 cut(s) 457, 548, 556
PsuI RGATCY 1 cut(s) 489
RsaI GTAC 3 cut(s) 39, 1087, 1227
RsaNI GTAC 3 cut(s) 38, 1086, 1226
RseI CAYNNNNRTG 1 cut(s) 470
SacII CCGCGG 1 cut(s) 844
SapI GCTCTTC 1 cut(s) 890
SaqAI TTAA 6 cut(s) 27, 110, 420, 591, 810, 1154
Sau96I GGNCC 3 cut(s) 457, 548, 556
ScaI AGTACT 1 cut(s) 1087
SchI GAGTC 2 cut(s) 320, 773
ScrFI CCNGG 3 cut(s) 154, 553, 928
SfaNI GCATC 2 cut(s) 963, 1204
Sfr303I CCGCGG 1 cut(s) 844
SgrBI CCGCGG 1 cut(s) 844
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 2 cut(s) 315, 590
SmoI CTYRAG 2 cut(s) 315, 590
SpeI ACTAGT 1 cut(s) 413
Sse9I AATT 8 cut(s) 32, 69, 100, 118, 707, 1009, 1105, 1281
SsiI CCGC 5 cut(s) 363, 485, 841, 843, 1115
SspMI CTAG 2 cut(s) 414, 993
StyD4I CCNGG 3 cut(s) 152, 551, 926
TaaI ACNGT 3 cut(s) 379, 560, 643
TaiI ACGT 2 cut(s) 249, 810
TaqI TCGA 4 cut(s) 60, 579, 703, 789
TasI AATT 8 cut(s) 32, 69, 100, 118, 707, 1009, 1105, 1281
TatI WGTACW 1 cut(s) 1085
TauI GCSGC 3 cut(s) 365, 487, 843
TfiI GAWTC 2 cut(s) 443, 1055
Tru1I TTAA 6 cut(s) 27, 110, 420, 591, 810, 1154
Tru9I TTAA 6 cut(s) 27, 110, 420, 591, 810, 1154
TscAI CASTG 2 cut(s) 544, 1282
TseI GCWGC 8 cut(s) 344, 347, 350, 353, 356, 359, 1120, 1158
TspDTI ATGAA 3 cut(s) 170, 350, 482
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 2 cut(s) 544, 1282
Vha464I CTTAAG 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 2 cut(s) 1009, 1281
XcmI CCANNNNNNNNNTGG 2 cut(s) 640, 1274
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 2 cut(s) 414, 993
ZrmI AGTACT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.