Rh7CG069100
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0008501
Physical Location & Seq
Reverse (-)
4938816 .. 4941874
3059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG069100.1

Sequence Viewer

Length: 1356 bp
ATGTTTTCTTATAGCTCAAACGCTATTAGCACCGGTACTACTGGCAATTACTACGAACCAGCCGTGCCTTTTCCTCATGACCAATCCTTTTTGATCCACAGTAGGCCTTTTCTTAATTCTACTACCAATCCAAATTGCAATTCCGCTTCAGTTATTTCCAATTCAAAACAAGATCAAGATCTACAAGAAGACCCTCATCATCATATTCATCCTCCTTTGTCTTTCTTCTACTTCCCCTCTCCCTTTGAAGACGACGATGTTTTACTCCACCAACACCACCACCACCATGACCTGTCGTCGCTTCATGAAAATACCTTATTTGCCCATCATCATCATCATCATCATCATCAGAACGGTAATCCTCTCACTGCTACAATGGTGGAGGGGGATTCTAACAAAGATGATCAGGTGGTGATCGGTAAGGAAGGTGAGCAACAACAACAACAACAGAAACAGATCCCGATGACGAGAAGATCTTGCAAGAAGGACCGGCACAGCAAGATTAGCACCGCCCGAGGACTGAGGGACCGGAGAATGAGATTGTCCCTCGATGTTGCCAGAAAGTTCTTTGGTTTGCAAGACGTGCTCGGCTTTGACAAGGCCAGCAAGACGGTGGAGTGGTTGCTCAATCAGGCAGGAGCTGAAATCAAGAAAGTAACAAGAGAAATGAACGGTCAGAACGAAAACCAAAGCTCTAGCACTACTACCGCCGCAGGAGCAGGTGCCAGAGCCAGAACCACATCTTCCATATCCGAGTGTGAAGTTGTATCCGGTACAGATGAGGTCGCGACTGATGATATTATTGATAAGGTAAGCCGGACATCCTCTTCTTCTTCTGCCAAAAATCGGATCAAAAGGACTGTCAGGCAACCAAAGAAGAGTGCATTGTTTAACCCTCTTGCAAAGGCGTCGAGGGAAATGGCAAGAGCGAGAGCAAGAGAAAGAACTAGAGAAAAGATGGGGAGACAGTCAAAGGCATGTGGTGATGTTGATCAGGCAAAGAAGATGAAGCCGGCCCTGAGCCAATTAAGTTCATGGAGTCCATTTGAAACCGGAGAAGAATCTGGAGCGACTCAAAGCCACAACAACAACATCAACAATCATTCTCCATTGGAAGCACTTGCTGAGGTTGAAGAGCCAATAAGCAGCTTCCAAGCAGCTGCGACTACGGTAGTAGTTCATCGTCATATTCATCAAGACTTGATTGAAATTGATGGTCATGATGCTGCAGCTAACTTGGTGACAATGGGAAAGTGGAGCCCCTCTTCCACTTTCAATTCTCTTCAAAATACTTCTGGATCAATTTCACAAGAGGTATGTAGTACTACTACTCGATTAATCTTTTGTGCTGTATAA

Protein Analysis

451

Amino Acids

50.08

Weight (kDa)

7.18

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 160 - 321 5.5e-44 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 710
Acc36I ACCTGC 1 cut(s) 710
AccB1I GGYRCC 1 cut(s) 722
AccII CGCG 1 cut(s) 788
AciI CCGC 4 cut(s) 144, 510, 708, 711
AclWI GGATC 4 cut(s) 88, 451, 857, 1306
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 908
AfaI GTAC 3 cut(s) 37, 775, 1324
AfiI CCNNNNNNNGG 1 cut(s) 846
AgeI ACCGGT 1 cut(s) 32
AgsI TTSAA 7 cut(s) 165, 248, 1049, 1133, 1208, 1276, 1286
AhdI GACNNNNNGTC 1 cut(s) 295
AjiI CACGTC 1 cut(s) 583
AjuI GAANNNNNNNTTGG 2 cut(s) 124, 156
AluBI AGCT 6 cut(s) 15, 641, 693, 1149, 1160, 1232
AluI AGCT 6 cut(s) 15, 641, 693, 1149, 1160, 1232
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 1 cut(s) 958
AlwI GGATC 4 cut(s) 88, 451, 857, 1306
AlwNI CAGNNNCTG 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 513
AoxI GGCC 3 cut(s) 104, 600, 1014
ApeKI GCWGC 5 cut(s) 1146, 1157, 1160, 1226, 1229
ArsI GACNNNNNNTTYG 2 cut(s) 846, 878
AseI ATTAAT 1 cut(s) 1337
AsiGI ACCGGT 1 cut(s) 32
AspS9I GGNCC 3 cut(s) 487, 526, 1015
AsuHPI GGTGA 4 cut(s) 424, 440, 995, 1252
AvaI CYCGRG 1 cut(s) 513
AvaII GGWCC 2 cut(s) 487, 526
BanI GGYRCC 1 cut(s) 722
BanII GRGCYC 1 cut(s) 1262
BbsI GAAGAC 2 cut(s) 195, 255
Bbv12I GWGCWC 1 cut(s) 588
BbvCI CCTCAGC 1 cut(s) 1125
BbvI GCAGC 5 cut(s) 1147, 1158, 1169, 1213, 1241
BccI CCATC 3 cut(s) 333, 952, 1208
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 891, 925
BciVI GTATCC 1 cut(s) 778
BclI TGATCA 2 cut(s) 403, 991
BcoDI GTCTC 1 cut(s) 958
BfaI CTAG 2 cut(s) 696, 948
BfmI CTRYAG 1 cut(s) 1227
BfuAI ACCTGC 1 cut(s) 710
BfuI GTATCC 1 cut(s) 778
BglII AGATCT 2 cut(s) 178, 473
BisI GCNGC 6 cut(s) 711, 1147, 1158, 1161, 1227, 1230
BlsI GCNGC 6 cut(s) 712, 1148, 1159, 1162, 1228, 1231
BmcAI AGTACT 1 cut(s) 1324
Bme18I GGWCC 2 cut(s) 487, 526
BmeRI GACNNNNNGTC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 513
BmgBI CACGTC 1 cut(s) 583
BmgT120I GGNCC 3 cut(s) 487, 526, 1015
BmiI GGNNCC 3 cut(s) 527, 724, 1259
BmsI GCATC 1 cut(s) 1213
BpiI GAAGAC 2 cut(s) 195, 255
BpmI CTGGAG 1 cut(s) 1086
Bpu10I CCTNAGC 2 cut(s) 1019, 1125
BsaBI GATNNNNATC 2 cut(s) 177, 990
BsaHI GRCGYC 1 cut(s) 908
BsaJI CCNNGG 1 cut(s) 514
BsaWI WCCGGW 4 cut(s) 32, 528, 770, 1052
Bsc4I CCNNNNNNNGG 1 cut(s) 846
Bse118I RCCGGY 3 cut(s) 32, 489, 1012
Bse1I ACTGG 1 cut(s) 46
Bse8I GATNNNNATC 2 cut(s) 177, 990
BseDI CCNNGG 1 cut(s) 514
BseGI GGATG 2 cut(s) 208, 821
BseJI GATNNNNATC 2 cut(s) 177, 990
BseLI CCNNNNNNNGG 1 cut(s) 846
BseMII CTCAG 3 cut(s) 512, 1010, 1116
BseNI ACTGG 1 cut(s) 46
BseXI GCAGC 5 cut(s) 1147, 1158, 1169, 1213, 1241
Bsh1236I CGCG 1 cut(s) 788
BshFI GGCC 3 cut(s) 106, 602, 1016
BshNI GGYRCC 1 cut(s) 722
BshTI ACCGGT 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 588
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 7 cut(s) 33, 490, 529, 771, 817, 1013, 1053
BslFI GGGAC 2 cut(s) 529, 539
BslI CCNNNNNNNGG 1 cut(s) 846
BsmAI GTCTC 1 cut(s) 958
BsmFI GGGAC 2 cut(s) 529, 539
BsnI GGCC 3 cut(s) 106, 602, 1016
BsoBI CYCGRG 1 cut(s) 513
Bsp1286I GDGCHC 2 cut(s) 588, 1262
Bsp68I TCGCGA 1 cut(s) 788
BspACI CCGC 4 cut(s) 144, 510, 708, 711
BspANI GGCC 3 cut(s) 106, 602, 1016
BspCNI CTCAG 3 cut(s) 513, 1011, 1117
BspFNI CGCG 1 cut(s) 788
BspHI TCATGA 3 cut(s) 76, 304, 1219
BspLI GGNNCC 3 cut(s) 527, 724, 1259
BspMAI CTGCAG 1 cut(s) 1231
BspMI ACCTGC 1 cut(s) 710
BspPI GGATC 4 cut(s) 88, 451, 857, 1306
BspQI GCTCTTC 1 cut(s) 1128
BspT107I GGYRCC 1 cut(s) 722
BsrFI RCCGGY 3 cut(s) 32, 489, 1012
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 3 cut(s) 32, 489, 1012
BssECI CCNNGG 1 cut(s) 514
BssNI GRCGYC 1 cut(s) 908
Bst4CI ACNGT 7 cut(s) 101, 356, 613, 674, 862, 969, 1171
Bst6I CTCTTC 5 cut(s) 832, 872, 1128, 1270, 1287
BstACI GRCGYC 1 cut(s) 908
BstAPI GCANNNNNTGC 1 cut(s) 583
BstC8I GCNNGC 2 cut(s) 604, 1014
BstDEI CTNAG 3 cut(s) 521, 1019, 1125
BstF5I GGATG 2 cut(s) 208, 821
BstFNI CGCG 1 cut(s) 788
BstMAI GTCTC 1 cut(s) 958
BstMWI GCNNNNNNNGC 3 cut(s) 504, 583, 716
BstNSI RCATGY 1 cut(s) 981
BstSFI CTRYAG 1 cut(s) 1227
BstUI CGCG 1 cut(s) 788
BstV1I GCAGC 5 cut(s) 1147, 1158, 1169, 1213, 1241
BstV2I GAAGAC 2 cut(s) 195, 255
BstX2I RGATCY 3 cut(s) 178, 456, 473
BstYI RGATCY 3 cut(s) 178, 456, 473
BsuI GTATCC 1 cut(s) 778
BsuRI GGCC 3 cut(s) 106, 602, 1016
BtrI CACGTC 1 cut(s) 583
BtsCI GGATG 2 cut(s) 208, 821
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 1 cut(s) 366
BtuMI TCGCGA 1 cut(s) 788
BveI ACCTGC 1 cut(s) 710
Cac8I GCNNGC 2 cut(s) 604, 1014
CaiI CAGNNNCTG 1 cut(s) 641
CciI TCATGA 3 cut(s) 76, 304, 1219
Cfr10I RCCGGY 3 cut(s) 32, 489, 1012
Cfr13I GGNCC 3 cut(s) 487, 526, 1015
CseI GACGC 1 cut(s) 897
Csp6I GTAC 3 cut(s) 36, 774, 1323
CspAI ACCGGT 1 cut(s) 32
CviAII CATG 6 cut(s) 77, 287, 305, 978, 1035, 1220
CviQI GTAC 3 cut(s) 36, 774, 1323
DdeI CTNAG 3 cut(s) 521, 1019, 1125
DriI GACNNNNNGTC 1 cut(s) 295
Eam1104I CTCTTC 5 cut(s) 832, 872, 1128, 1270, 1287
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 5 cut(s) 832, 872, 1128, 1270, 1287
Eco147I AGGCCT 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 1262
Eco47I GGWCC 2 cut(s) 487, 526
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 513
EcoT38I GRGCYC 1 cut(s) 1262
FaeI CATG 6 cut(s) 80, 290, 308, 981, 1038, 1223
FaqI GGGAC 2 cut(s) 529, 539
FatI CATG 6 cut(s) 76, 286, 304, 977, 1034, 1219
FbaI TGATCA 2 cut(s) 403, 991
Fnu4HI GCNGC 6 cut(s) 711, 1147, 1158, 1161, 1227, 1230
FokI GGATG 2 cut(s) 195, 808
FriOI GRGCYC 1 cut(s) 1262
Fsp4HI GCNGC 6 cut(s) 711, 1147, 1158, 1161, 1227, 1230
FspBI CTAG 2 cut(s) 696, 948
GluI GCNGC 6 cut(s) 711, 1147, 1158, 1161, 1227, 1230
GsuI CTGGAG 1 cut(s) 1086
HaeIII GGCC 3 cut(s) 106, 602, 1016
HapII CCGG 7 cut(s) 33, 490, 529, 771, 817, 1013, 1053
HgaI GACGC 1 cut(s) 897
Hin1I GRCGYC 1 cut(s) 908
Hin1II CATG 6 cut(s) 80, 290, 308, 981, 1038, 1223
HinfI GANTC 4 cut(s) 389, 1039, 1061, 1072
HpaII CCGG 7 cut(s) 33, 490, 529, 771, 817, 1013, 1053
HphI GGTGA 4 cut(s) 424, 440, 995, 1252
Hpy188I TCNGA 4 cut(s) 351, 678, 754, 849
Hpy99I CGWCG 3 cut(s) 257, 301, 913
HpyAV CCTTC 2 cut(s) 419, 478
HpyCH4III ACNGT 7 cut(s) 101, 356, 613, 674, 862, 969, 1171
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 6 cut(s) 138, 480, 577, 884, 902, 1229
HpyF10VI GCNNNNNNNGC 3 cut(s) 504, 583, 716
HpyF3I CTNAG 3 cut(s) 521, 1019, 1125
HpySE526I ACGT 1 cut(s) 582
Hsp92I GRCGYC 1 cut(s) 908
Hsp92II CATG 6 cut(s) 80, 290, 308, 981, 1038, 1223
KroI GCCGGC 1 cut(s) 1012
KroNI GCCGGC 1 cut(s) 1014
Ksp22I TGATCA 2 cut(s) 403, 991
LguI GCTCTTC 1 cut(s) 1128
LmnI GCTCC 4 cut(s) 638, 716, 1067, 1257
Lsp1109I GCAGC 5 cut(s) 1147, 1158, 1169, 1213, 1241
LweI GCATC 1 cut(s) 1213
MaeI CTAG 2 cut(s) 696, 948
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 2 cut(s) 655, 1240
MflI RGATCY 3 cut(s) 178, 456, 473
MhlI GDGCHC 2 cut(s) 588, 1262
MluCI AATT 9 cut(s) 46, 115, 133, 139, 160, 1025, 1209, 1276, 1302
MlyI GAGTC 2 cut(s) 1048, 1066
MroNI GCCGGC 1 cut(s) 1012
MseI TTAA 4 cut(s) 114, 891, 1028, 1337
MslI CAYNNNNRTG 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 1160
MspI CCGG 7 cut(s) 33, 490, 529, 771, 817, 1013, 1053
MvnI CGCG 1 cut(s) 788
MwoI GCNNNNNNNGC 3 cut(s) 504, 583, 716
NaeI GCCGGC 1 cut(s) 1014
NgoMIV GCCGGC 1 cut(s) 1012
NlaIII CATG 6 cut(s) 80, 290, 308, 981, 1038, 1223
NlaIV GGNNCC 3 cut(s) 527, 724, 1259
NmeAIII GCCGAG 1 cut(s) 567
NmuCI GTSAC 1 cut(s) 1240
NruI TCGCGA 1 cut(s) 788
NspI RCATGY 1 cut(s) 981
PagI TCATGA 3 cut(s) 76, 304, 1219
PaqCI CACCTGC 1 cut(s) 710
PceI AGGCCT 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 1128
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 678
PdiI GCCGGC 1 cut(s) 1014
PfeI GAWTC 2 cut(s) 389, 1061
PinAI ACCGGT 1 cut(s) 32
PkrI GCNGC 6 cut(s) 712, 1148, 1159, 1162, 1228, 1231
PleI GAGTC 2 cut(s) 1047, 1066
PpsI GAGTC 2 cut(s) 1047, 1066
PshBI ATTAAT 1 cut(s) 1337
PspN4I GGNNCC 3 cut(s) 527, 724, 1259
PspPI GGNCC 3 cut(s) 487, 526, 1015
PstI CTGCAG 1 cut(s) 1231
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 3 cut(s) 178, 456, 473
PvuII CAGCTG 1 cut(s) 1160
RruI TCGCGA 1 cut(s) 788
RsaI GTAC 3 cut(s) 37, 775, 1324
RsaNI GTAC 3 cut(s) 36, 774, 1323
RseI CAYNNNNRTG 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 1128
SaqAI TTAA 4 cut(s) 114, 891, 1028, 1337
SatI GCNGC 6 cut(s) 711, 1147, 1158, 1161, 1227, 1230
Sau96I GGNCC 3 cut(s) 487, 526, 1015
ScaI AGTACT 1 cut(s) 1324
SchI GAGTC 2 cut(s) 1048, 1066
SduI GDGCHC 2 cut(s) 588, 1262
SfaNI GCATC 1 cut(s) 1213
SfcI CTRYAG 1 cut(s) 1227
SinI GGWCC 2 cut(s) 487, 526
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 9 cut(s) 46, 115, 133, 139, 160, 1025, 1209, 1276, 1302
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 4 cut(s) 144, 510, 708, 711
SspMI CTAG 2 cut(s) 696, 948
StuI AGGCCT 1 cut(s) 106
TaaI ACNGT 7 cut(s) 101, 356, 613, 674, 862, 969, 1171
TaiI ACGT 1 cut(s) 585
TaqI TCGA 3 cut(s) 549, 911, 1333
TasI AATT 9 cut(s) 46, 115, 133, 139, 160, 1025, 1209, 1276, 1302
TatI WGTACW 1 cut(s) 1322
TauI GCSGC 1 cut(s) 713
TfiI GAWTC 2 cut(s) 389, 1061
Tru1I TTAA 4 cut(s) 114, 891, 1028, 1337
Tru9I TTAA 4 cut(s) 114, 891, 1028, 1337
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 1240
TseI GCWGC 5 cut(s) 1146, 1157, 1160, 1226, 1229
Tsp45I GTSAC 1 cut(s) 1240
TspDTI ATGAA 8 cut(s) 197, 293, 321, 683, 1022, 1023, 1169, 1181
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 2 cut(s) 487, 526
VspI ATTAAT 1 cut(s) 1337
XceI RCATGY 1 cut(s) 981
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XspI CTAG 2 cut(s) 696, 948
ZrmI AGTACT 1 cut(s) 1324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.