Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008501

Physical Location & Seq

Genomic Coordinates Forward (+)

5648263 .. 5651322

Gene Structure 3060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG079000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGTTTTCTTATAGCTCAAACGCTATTAGCACCGGTACTACTGGCAATTACTACGAACCTGCCGTGCCTTTTCCTCATGACCAATCCTTTTTGATCCACAGTAGGCCTTTTCTTAATTCTACTACCAATCCAAATTGCAATTCCGCTTCAGTTATTTCCAATTCCAAACAAGATCAAGATCTACAAGAAGAACCTCATCATCATATTCATCCTCCTTTGTCTTTCTTCTACTTCCCCTCTCCCTTTGAAGACGACGATGTTTTACTCCACCAACACCACCACCACCATGACCTGTCGTCGCTTCATGAAAATACCTTATTTGCCCATCATCATCATCATCATCGTCATCATCATCAGACCGGTACTCCTCTCACTGCTACAATGGTGGAGGGGGATTCTAACAAAGATGATCAGGTGGTGATCGGTAAGGAAGGTGAGCAACAGCAACAACAACAGAAACAGATCCCGATGACGAGAAGATCTTGCAAGAAGGACCGGCACAGCAAGATTAGCACTGCCCGAGGACTGAGGGACCGGAGAATGAGATTGTCCCTCGATGTTGCCAGAAAGTTCTTTGGTTTGCAAGACATGCTCGGCTTTGACAAGGCCAGCAAGACGGTGGAGTGGTTGCTCAATCAGGCAGAAGCTGAAATCAAGAAAGTAAAAAGAGAAATGAACGGTCAGAACGAAAACCAAAGCTCTAGCACTACTACCGCCGCAGGAGCAGGTGCTAGAGCCAGAACCACATCATCCATATCCGAGTGTGAAGTTGTATCCGGTACAGATGAGGTCGCGACTGATGATATTATTGATAAGGTAAGCCGGACATCCTCTTCTTCTTCTGCCAAAAATCGGATCAAAAGGACTGTCAGGCAACCAAAGAAGAGTGCATTGTTTAACCCTCTTGCAAAGGCGTCGAGGGAAATGGCAAGAGCGAGAGCAAGAGAAAGAACTAGAGAAAAGATGGGGAGACAGTCAAAGCCATGTGGTGATGTTGATCAGGCAAAGAAGATGAAGCCGGACCTGAGCCAATTAAGTTCATGGAGTACATTTGAAACCGGAGAAGAATCTGGAGCGACTCAAAGCCACAACAACAACATCAACAATCATTCTCCATTGGAAGCACTTGCTGAGGTTGAAGAGCCAATAAGCAGCTTCCAAGCAGCTGCGACTACGGTAGTAGTTCATCGTCATATTCATCAAGACTTGATTGAAATTGATGGTCATGATGCTGTAGCTAACTTGGTGACAATGGGAAAGTGGAGCCCCTCTTCCACTTTCAATTCTCTTCAAAATACTTCTGGATCAATTTCACAAGAGGTATGTAGTACCACTACTCGAATAATCTTTTGTGCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905393 GO:1905428 GO:2000026 GO:2000032 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

453

Amino Acids

50.59

Weight (kDa)

7.19

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	162 - 323	9.2e-45	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18550 AT3G18550 AT3G18550 AT3G18550
fragaria_vesca	FvH4_5g12710
malus_domestica	MD06G1211100.v1.1 MD14G1221800.v1.1
prunus_persica	Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1
pyrus_communis	pycom06g18840 pycom14g18340
rosa_chinensis	RchiOBHm_Chr7g0184601
rosa_laevigata	RLG00000004965
rosa_multiflora	Rmu_co8093794.1_g000001 Rmu_ssc0000289.1_g000032 Rmu_ssc0000289.1_g000033
rosa_roxburghii	Rroxscaffold_3G00269490
rosa_samantha	Rh7AG079000 Rh7BG068300 Rh7CG069100 Rh7DG068400
rosa_wichuraiana	Rw7G005630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	716
Acc36I	ACCTGC	2 cut(s)	67, 716
AccII	CGCG	1 cut(s)	794
AciI	CCGC	3 cut(s)	144, 714, 717
AclWI	GGATC	4 cut(s)	88, 457, 863, 1312
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	914
AfaI	GTAC	5 cut(s)	37, 364, 781, 1048, 1330
AfiI	CCNNNNNNNGG	1 cut(s)	852
AgeI	ACCGGT	2 cut(s)	32, 359
AgsI	TTSAA	6 cut(s)	248, 1055, 1139, 1214, 1282, 1292
AhdI	GACNNNNNGTC	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	124, 156
AluBI	AGCT	6 cut(s)	15, 647, 699, 1155, 1166, 1238
AluI	AGCT	6 cut(s)	15, 647, 699, 1155, 1166, 1238
Alw26I	GTCTC	1 cut(s)	964
AlwI	GGATC	4 cut(s)	88, 457, 863, 1312
AlwNI	CAGNNNCTG	1 cut(s)	647
Ama87I	CYCGRG	1 cut(s)	519
AoxI	GGCC	2 cut(s)	104, 606
ApeKI	GCWGC	3 cut(s)	1152, 1163, 1166
ArsI	GACNNNNNNTTYG	2 cut(s)	852, 884
AsiGI	ACCGGT	2 cut(s)	32, 359
AspS9I	GGNCC	3 cut(s)	493, 532, 1021
AsuHPI	GGTGA	4 cut(s)	430, 446, 1001, 1258
AvaI	CYCGRG	1 cut(s)	519
AvaII	GGWCC	3 cut(s)	493, 532, 1021
BanII	GRGCYC	1 cut(s)	1268
BbsI	GAAGAC	1 cut(s)	255
BbvCI	CCTCAGC	1 cut(s)	1131
BbvI	GCAGC	3 cut(s)	1153, 1164, 1175
BccI	CCATC	3 cut(s)	333, 958, 1214
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	897, 931
BciVI	GTATCC	1 cut(s)	784
BclI	TGATCA	2 cut(s)	409, 997
BcoDI	GTCTC	1 cut(s)	964
BfaI	CTAG	3 cut(s)	702, 732, 954
BfmI	CTRYAG	1 cut(s)	1233
BfuAI	ACCTGC	2 cut(s)	67, 716
BfuI	GTATCC	1 cut(s)	784
BglII	AGATCT	2 cut(s)	178, 479
BisI	GCNGC	4 cut(s)	717, 1153, 1164, 1167
BlsI	GCNGC	4 cut(s)	718, 1154, 1165, 1168
Bme18I	GGWCC	3 cut(s)	493, 532, 1021
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	519
BmgT120I	GGNCC	3 cut(s)	493, 532, 1021
BmiI	GGNNCC	2 cut(s)	533, 1265
BmsI	GCATC	1 cut(s)	1219
BpiI	GAAGAC	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	1092
Bpu10I	CCTNAGC	2 cut(s)	1025, 1131
BsaBI	GATNNNNATC	2 cut(s)	177, 996
BsaHI	GRCGYC	1 cut(s)	914
BsaJI	CCNNGG	1 cut(s)	520
BsaWI	WCCGGW	5 cut(s)	32, 359, 534, 776, 1058
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	1 cut(s)	852
Bse118I	RCCGGY	3 cut(s)	32, 359, 495
Bse1I	ACTGG	1 cut(s)	46
Bse8I	GATNNNNATC	2 cut(s)	177, 996
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	3 cut(s)	208, 749, 827
BseJI	GATNNNNATC	2 cut(s)	177, 996
BseLI	CCNNNNNNNGG	1 cut(s)	852
BseMII	CTCAG	3 cut(s)	518, 1016, 1122
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	3 cut(s)	1153, 1164, 1175
Bsh1236I	CGCG	1 cut(s)	794
BshFI	GGCC	2 cut(s)	106, 608
BshTI	ACCGGT	2 cut(s)	32, 359
BsiHKCI	CYCGRG	1 cut(s)	519
BsiSI	CCGG	8 cut(s)	33, 360, 496, 535, 777, 823, 1019, 1059
BslFI	GGGAC	2 cut(s)	535, 545
BslI	CCNNNNNNNGG	1 cut(s)	852
BsmAI	GTCTC	1 cut(s)	964
BsmFI	GGGAC	2 cut(s)	535, 545
BsnI	GGCC	2 cut(s)	106, 608
BsoBI	CYCGRG	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	1268
Bsp68I	TCGCGA	1 cut(s)	794
BspACI	CCGC	3 cut(s)	144, 714, 717
BspANI	GGCC	2 cut(s)	106, 608
BspCNI	CTCAG	3 cut(s)	519, 1017, 1123
BspFNI	CGCG	1 cut(s)	794
BspHI	TCATGA	3 cut(s)	76, 304, 1225
BspLI	GGNNCC	2 cut(s)	533, 1265
BspMI	ACCTGC	2 cut(s)	67, 716
BspPI	GGATC	4 cut(s)	88, 457, 863, 1312
BspQI	GCTCTTC	1 cut(s)	1134
BsrFI	RCCGGY	3 cut(s)	32, 359, 495
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	3 cut(s)	32, 359, 495
BssECI	CCNNGG	1 cut(s)	520
BssNI	GRCGYC	1 cut(s)	914
Bst4CI	ACNGT	6 cut(s)	101, 619, 680, 868, 975, 1177
Bst6I	CTCTTC	5 cut(s)	838, 878, 1134, 1276, 1293
BstACI	GRCGYC	1 cut(s)	914
BstAPI	GCANNNNNTGC	1 cut(s)	589
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	3 cut(s)	527, 1025, 1131
BstF5I	GGATG	3 cut(s)	208, 749, 827
BstFNI	CGCG	1 cut(s)	794
BstMAI	GTCTC	1 cut(s)	964
BstMWI	GCNNNNNNNGC	3 cut(s)	510, 589, 722
BstNSI	RCATGY	1 cut(s)	592
BstSFI	CTRYAG	1 cut(s)	1233
BstUI	CGCG	1 cut(s)	794
BstV1I	GCAGC	3 cut(s)	1153, 1164, 1175
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	3 cut(s)	178, 462, 479
BstYI	RGATCY	3 cut(s)	178, 462, 479
BsuI	GTATCC	1 cut(s)	784
BsuRI	GGCC	2 cut(s)	106, 608
BtsCI	GGATG	3 cut(s)	208, 749, 827
BtsI	GCAGTG	2 cut(s)	372, 513
BtsIMutI	CAGTG	2 cut(s)	372, 513
BtuMI	TCGCGA	1 cut(s)	794
BveI	ACCTGC	2 cut(s)	67, 716
Cac8I	GCNNGC	1 cut(s)	610
CaiI	CAGNNNCTG	1 cut(s)	647
CciI	TCATGA	3 cut(s)	76, 304, 1225
Cfr10I	RCCGGY	3 cut(s)	32, 359, 495
Cfr13I	GGNCC	3 cut(s)	493, 532, 1021
CseI	GACGC	1 cut(s)	903
Csp6I	GTAC	5 cut(s)	36, 363, 780, 1047, 1329
CspAI	ACCGGT	2 cut(s)	32, 359
CviAII	CATG	7 cut(s)	77, 287, 305, 589, 984, 1041, 1226
CviQI	GTAC	5 cut(s)	36, 363, 780, 1047, 1329
DdeI	CTNAG	3 cut(s)	527, 1025, 1131
DriI	GACNNNNNGTC	1 cut(s)	295
Eam1104I	CTCTTC	5 cut(s)	838, 878, 1134, 1276, 1293
Eam1105I	GACNNNNNGTC	1 cut(s)	295
EarI	CTCTTC	5 cut(s)	838, 878, 1134, 1276, 1293
Eco147I	AGGCCT	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	1268
Eco47I	GGWCC	3 cut(s)	493, 532, 1021
Eco57I	CTGAAG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	1268
FaeI	CATG	7 cut(s)	80, 290, 308, 592, 987, 1044, 1229
FaqI	GGGAC	2 cut(s)	535, 545
FatI	CATG	7 cut(s)	76, 286, 304, 588, 983, 1040, 1225
FbaI	TGATCA	2 cut(s)	409, 997
Fnu4HI	GCNGC	4 cut(s)	717, 1153, 1164, 1167
FokI	GGATG	3 cut(s)	195, 736, 814
FriOI	GRGCYC	1 cut(s)	1268
Fsp4HI	GCNGC	4 cut(s)	717, 1153, 1164, 1167
FspBI	CTAG	3 cut(s)	702, 732, 954
GluI	GCNGC	4 cut(s)	717, 1153, 1164, 1167
GsuI	CTGGAG	1 cut(s)	1092
HaeIII	GGCC	2 cut(s)	106, 608
HapII	CCGG	8 cut(s)	33, 360, 496, 535, 777, 823, 1019, 1059
HgaI	GACGC	1 cut(s)	903
Hin1I	GRCGYC	1 cut(s)	914
Hin1II	CATG	7 cut(s)	80, 290, 308, 592, 987, 1044, 1229
HinfI	GANTC	3 cut(s)	395, 1067, 1078
HpaII	CCGG	8 cut(s)	33, 360, 496, 535, 777, 823, 1019, 1059
HphI	GGTGA	4 cut(s)	430, 446, 1001, 1258
Hpy188I	TCNGA	4 cut(s)	357, 684, 760, 855
Hpy99I	CGWCG	3 cut(s)	257, 301, 919
HpyAV	CCTTC	2 cut(s)	425, 484
HpyCH4III	ACNGT	6 cut(s)	101, 619, 680, 868, 975, 1177
HpyCH4V	TGCA	5 cut(s)	138, 486, 583, 890, 908
HpyF10VI	GCNNNNNNNGC	3 cut(s)	510, 589, 722
HpyF3I	CTNAG	3 cut(s)	527, 1025, 1131
Hsp92I	GRCGYC	1 cut(s)	914
Hsp92II	CATG	7 cut(s)	80, 290, 308, 592, 987, 1044, 1229
Ksp22I	TGATCA	2 cut(s)	409, 997
LguI	GCTCTTC	1 cut(s)	1134
LmnI	GCTCC	3 cut(s)	722, 1073, 1263
Lsp1109I	GCAGC	3 cut(s)	1153, 1164, 1175
LweI	GCATC	1 cut(s)	1219
MaeI	CTAG	3 cut(s)	702, 732, 954
MaeIII	GTNAC	1 cut(s)	1246
MflI	RGATCY	3 cut(s)	178, 462, 479
MhlI	GDGCHC	1 cut(s)	1268
MluCI	AATT	9 cut(s)	46, 115, 133, 139, 160, 1031, 1215, 1282, 1308
MlyI	GAGTC	1 cut(s)	1072
MseI	TTAA	3 cut(s)	114, 897, 1034
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	1166
MspI	CCGG	8 cut(s)	33, 360, 496, 535, 777, 823, 1019, 1059
MvnI	CGCG	1 cut(s)	794
MwoI	GCNNNNNNNGC	3 cut(s)	510, 589, 722
NlaIII	CATG	7 cut(s)	80, 290, 308, 592, 987, 1044, 1229
NlaIV	GGNNCC	2 cut(s)	533, 1265
NmeAIII	GCCGAG	1 cut(s)	573
NmuCI	GTSAC	1 cut(s)	1246
NruI	TCGCGA	1 cut(s)	794
NspI	RCATGY	1 cut(s)	592
PagI	TCATGA	3 cut(s)	76, 304, 1225
PaqCI	CACCTGC	1 cut(s)	716
PceI	AGGCCT	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	1134
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 684
PfeI	GAWTC	2 cut(s)	395, 1067
PinAI	ACCGGT	2 cut(s)	32, 359
PkrI	GCNGC	4 cut(s)	718, 1154, 1165, 1168
PleI	GAGTC	1 cut(s)	1072
PpsI	GAGTC	1 cut(s)	1072
PspN4I	GGNNCC	2 cut(s)	533, 1265
PspPI	GGNCC	3 cut(s)	493, 532, 1021
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	3 cut(s)	178, 462, 479
PvuII	CAGCTG	1 cut(s)	1166
RruI	TCGCGA	1 cut(s)	794
RsaI	GTAC	5 cut(s)	37, 364, 781, 1048, 1330
RsaNI	GTAC	5 cut(s)	36, 363, 780, 1047, 1329
RseI	CAYNNNNRTG	1 cut(s)	285
SapI	GCTCTTC	1 cut(s)	1134
SaqAI	TTAA	3 cut(s)	114, 897, 1034
SatI	GCNGC	4 cut(s)	717, 1153, 1164, 1167
Sau96I	GGNCC	3 cut(s)	493, 532, 1021
SchI	GAGTC	1 cut(s)	1072
SduI	GDGCHC	1 cut(s)	1268
SfaNI	GCATC	1 cut(s)	1219
SfcI	CTRYAG	1 cut(s)	1233
SinI	GGWCC	3 cut(s)	493, 532, 1021
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	9 cut(s)	46, 115, 133, 139, 160, 1031, 1215, 1282, 1308
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	3 cut(s)	144, 714, 717
SspMI	CTAG	3 cut(s)	702, 732, 954
StuI	AGGCCT	1 cut(s)	106
TaaI	ACNGT	6 cut(s)	101, 619, 680, 868, 975, 1177
TaqI	TCGA	3 cut(s)	555, 917, 1339
TasI	AATT	9 cut(s)	46, 115, 133, 139, 160, 1031, 1215, 1282, 1308
TatI	WGTACW	1 cut(s)	1046
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	2 cut(s)	395, 1067
Tru1I	TTAA	3 cut(s)	114, 897, 1034
Tru9I	TTAA	3 cut(s)	114, 897, 1034
TscAI	CASTG	2 cut(s)	379, 520
TseFI	GTSAC	1 cut(s)	1246
TseI	GCWGC	3 cut(s)	1152, 1163, 1166
Tsp45I	GTSAC	1 cut(s)	1246
TspDTI	ATGAA	8 cut(s)	197, 293, 321, 689, 1028, 1029, 1175, 1187
TspRI	CASTG	2 cut(s)	379, 520
VpaK11BI	GGWCC	3 cut(s)	493, 532, 1021
XceI	RCATGY	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XspI	CTAG	3 cut(s)	702, 732, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.