Rh7BG068300
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008501
Physical Location & Seq
Reverse (-)
4531509 .. 4533730
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG068300.1

Sequence Viewer

Length: 1344 bp
ATGTTTTCTTATAGCTCAAACGCTATTAGCACCGGTACTACTGGCAATTACTACGAACCTGCCGTGCCTTTTCCTCATGACCAATCCTTTTTTATCCACAGTAGGCCTTTTCTTAATTCTACTACCAATCCAAATTGCAATTCCGCTTCAGTTATTTCCAATCCCAAACAAGATCAAGATCTACAAGAAGACCCTCATCATCATATTCATCCTCCTTTGTCTTTCTTCTACTTCCCCTCTCCCTTTGAAGACGACGATGTTTTACTCCACCAACACCACCACCACCATGACCTGTCGTCGCTTCATGAAAATACCTTACTTGCCCATCATCATCATCATCAGACCGGTACTCCTCTCACTGCTACAATGGTGGAGGGGGATTCTAAAAAAGATGATCAGGTGGTGATCGGTAAGGAAGGTGAGCAACAACAACAACAGAAACAGATCCCGATGACGAGAAGATCTTGCAAGAAGGACCGGCACAGCAAGATTAGCACCGCCCGAGGACTGAGGGACCGGAGAATGAGATTGTCCCTCGATGTTGCCAGAAAGTTCTTTGGTTTGCAAGACGTGCTCGGCTTTGACAAGGCCAGCAAGACGGTGGAGTGGTTGCTCAATCAGGCAGGAGCTGAAATCAAGAAAGTAACAAGAGAAATGAACGGTCAGAACGAAAACCAAAGCTCTAGCACTACTACCGCCGCAGGAGCAGGTGCCAGAGCCAGAACCACATCTTCCATATCCGAGTGTGAAGTTGTATCCGGTACAGATGAGGTCGCGACTGATGATATTATTGATAAGGTAAGCCGGACATCCTCTTCTTCTTCTGCCAAAAATCGGATCAAAAGGACTGTCAGACAACCAAAGAAGAGTGCATTGTTTAACCCTCTTGCAAAGGCGTCGAGGGAAATGGCAAGGGCGAGAGCAAGAGAAAGAACTAGAGAAAAGATGGGGAGACAGTCAAAGCCATGTGGTGATGTTGATCAGGCAAAGAAGATGAAGCCGGACCTGAGCCAATTAAGTTCATGGAGAACATTTGAAACCGGAGAAGAATCTGGAAAGACTCAAAGCCACAACAACAACATCAACAATCATTCTCCATTGGAAGCACTTGCTGAGGTTGAAGAGCCAATAAGCAGCTTCCAAGCAGCTGCGACTACGGTAGTAGTTCATCGTCATATTCATCAAGACTTGATTGAAATTGATGGTCATGATGCTGCAGCTAACTTGGTGACAATGGGAAAGTGGAGCCCCTCTTCCACTTTCAATTCTCTTCAAAATACTTCTGGATCAATTTCACAAGAGGTATGTAGTACTACTACTCAATTAATCTTTTTTGCTGTATAA

Protein Analysis

447

Amino Acids

49.75

Weight (kDa)

7.41

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 156 - 317 5.4e-44 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 698
Acc36I ACCTGC 2 cut(s) 67, 698
AccB1I GGYRCC 1 cut(s) 710
AccII CGCG 1 cut(s) 776
AciI CCGC 4 cut(s) 144, 498, 696, 699
AclWI GGATC 3 cut(s) 439, 845, 1294
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 896
AfaI GTAC 4 cut(s) 37, 349, 763, 1312
AfiI CCNNNNNNNGG 1 cut(s) 834
AgeI ACCGGT 2 cut(s) 32, 344
AgsI TTSAA 6 cut(s) 248, 1037, 1121, 1196, 1264, 1274
AhdI GACNNNNNGTC 1 cut(s) 295
AjiI CACGTC 1 cut(s) 571
AjuI GAANNNNNNNTTGG 2 cut(s) 124, 156
AluBI AGCT 6 cut(s) 15, 629, 681, 1137, 1148, 1220
AluI AGCT 6 cut(s) 15, 629, 681, 1137, 1148, 1220
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 1 cut(s) 946
AlwI GGATC 3 cut(s) 439, 845, 1294
AlwNI CAGNNNCTG 1 cut(s) 629
Ama87I CYCGRG 1 cut(s) 501
AoxI GGCC 2 cut(s) 104, 588
ApeKI GCWGC 5 cut(s) 1134, 1145, 1148, 1214, 1217
ArsI GACNNNNNNTTYG 2 cut(s) 834, 866
AseI ATTAAT 1 cut(s) 1325
AsiGI ACCGGT 2 cut(s) 32, 344
AspS9I GGNCC 3 cut(s) 475, 514, 1003
AsuHPI GGTGA 4 cut(s) 415, 431, 983, 1240
AvaI CYCGRG 1 cut(s) 501
AvaII GGWCC 3 cut(s) 475, 514, 1003
BanI GGYRCC 1 cut(s) 710
BanII GRGCYC 1 cut(s) 1250
BbsI GAAGAC 2 cut(s) 195, 255
Bbv12I GWGCWC 1 cut(s) 576
BbvCI CCTCAGC 1 cut(s) 1113
BbvI GCAGC 5 cut(s) 1135, 1146, 1157, 1201, 1229
BccI CCATC 3 cut(s) 333, 940, 1196
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 879, 913
BciVI GTATCC 1 cut(s) 766
BclI TGATCA 2 cut(s) 394, 979
BcoDI GTCTC 1 cut(s) 946
BfaI CTAG 2 cut(s) 684, 936
BfmI CTRYAG 1 cut(s) 1215
BfuAI ACCTGC 2 cut(s) 67, 698
BfuI GTATCC 1 cut(s) 766
BglII AGATCT 2 cut(s) 178, 461
BisI GCNGC 6 cut(s) 699, 1135, 1146, 1149, 1215, 1218
BlsI GCNGC 6 cut(s) 700, 1136, 1147, 1150, 1216, 1219
BmcAI AGTACT 1 cut(s) 1312
Bme18I GGWCC 3 cut(s) 475, 514, 1003
BmeRI GACNNNNNGTC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 501
BmgBI CACGTC 1 cut(s) 571
BmgT120I GGNCC 3 cut(s) 475, 514, 1003
BmiI GGNNCC 3 cut(s) 515, 712, 1247
BmsI GCATC 1 cut(s) 1201
BpiI GAAGAC 2 cut(s) 195, 255
Bpu10I CCTNAGC 2 cut(s) 1007, 1113
BsaBI GATNNNNATC 2 cut(s) 177, 978
BsaHI GRCGYC 1 cut(s) 896
BsaJI CCNNGG 1 cut(s) 502
BsaWI WCCGGW 5 cut(s) 32, 344, 516, 758, 1040
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bsc4I CCNNNNNNNGG 1 cut(s) 834
Bse118I RCCGGY 3 cut(s) 32, 344, 477
Bse1I ACTGG 1 cut(s) 46
Bse8I GATNNNNATC 2 cut(s) 177, 978
BseDI CCNNGG 1 cut(s) 502
BseGI GGATG 2 cut(s) 208, 809
BseJI GATNNNNATC 2 cut(s) 177, 978
BseLI CCNNNNNNNGG 1 cut(s) 834
BseMII CTCAG 3 cut(s) 500, 998, 1104
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 342
BseXI GCAGC 5 cut(s) 1135, 1146, 1157, 1201, 1229
Bsh1236I CGCG 1 cut(s) 776
BshFI GGCC 2 cut(s) 106, 590
BshNI GGYRCC 1 cut(s) 710
BshTI ACCGGT 2 cut(s) 32, 344
BsiHKAI GWGCWC 1 cut(s) 576
BsiHKCI CYCGRG 1 cut(s) 501
BsiSI CCGG 8 cut(s) 33, 345, 478, 517, 759, 805, 1001, 1041
BslFI GGGAC 2 cut(s) 517, 527
BslI CCNNNNNNNGG 1 cut(s) 834
BsmAI GTCTC 1 cut(s) 946
BsmFI GGGAC 2 cut(s) 517, 527
BsnI GGCC 2 cut(s) 106, 590
BsoBI CYCGRG 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 576, 1250
Bsp143I GATC 9 cut(s) 172, 178, 394, 405, 444, 461, 837, 979, 1286
Bsp68I TCGCGA 1 cut(s) 776
BspACI CCGC 4 cut(s) 144, 498, 696, 699
BspANI GGCC 2 cut(s) 106, 590
BspCNI CTCAG 3 cut(s) 501, 999, 1105
BspFNI CGCG 1 cut(s) 776
BspHI TCATGA 3 cut(s) 76, 304, 1207
BspLI GGNNCC 3 cut(s) 515, 712, 1247
BspMAI CTGCAG 1 cut(s) 1219
BspMI ACCTGC 2 cut(s) 67, 698
BspPI GGATC 3 cut(s) 439, 845, 1294
BspQI GCTCTTC 1 cut(s) 1116
BspT107I GGYRCC 1 cut(s) 710
BsrFI RCCGGY 3 cut(s) 32, 344, 477
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 3 cut(s) 32, 344, 477
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 9 cut(s) 172, 178, 394, 405, 444, 461, 837, 979, 1286
BssNI GRCGYC 1 cut(s) 896
Bst4CI ACNGT 6 cut(s) 101, 601, 662, 850, 957, 1159
Bst6I CTCTTC 5 cut(s) 820, 860, 1116, 1258, 1275
BstACI GRCGYC 1 cut(s) 896
BstAPI GCANNNNNTGC 1 cut(s) 571
BstC8I GCNNGC 1 cut(s) 592
BstDEI CTNAG 3 cut(s) 509, 1007, 1113
BstF5I GGATG 2 cut(s) 208, 809
BstFNI CGCG 1 cut(s) 776
BstKTI GATC 9 cut(s) 175, 181, 397, 408, 447, 464, 840, 982, 1289
BstMAI GTCTC 1 cut(s) 946
BstMBI GATC 9 cut(s) 172, 178, 394, 405, 444, 461, 837, 979, 1286
BstMWI GCNNNNNNNGC 3 cut(s) 492, 571, 704
BstSFI CTRYAG 1 cut(s) 1215
BstUI CGCG 1 cut(s) 776
BstV1I GCAGC 5 cut(s) 1135, 1146, 1157, 1201, 1229
BstV2I GAAGAC 2 cut(s) 195, 255
BstX2I RGATCY 3 cut(s) 178, 444, 461
BstYI RGATCY 3 cut(s) 178, 444, 461
BsuI GTATCC 1 cut(s) 766
BsuRI GGCC 2 cut(s) 106, 590
BtrI CACGTC 1 cut(s) 571
BtsCI GGATG 2 cut(s) 208, 809
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
BtuMI TCGCGA 1 cut(s) 776
BveI ACCTGC 2 cut(s) 67, 698
Cac8I GCNNGC 1 cut(s) 592
CaiI CAGNNNCTG 1 cut(s) 629
CciI TCATGA 3 cut(s) 76, 304, 1207
Cfr10I RCCGGY 3 cut(s) 32, 344, 477
Cfr13I GGNCC 3 cut(s) 475, 514, 1003
CseI GACGC 1 cut(s) 885
Csp6I GTAC 4 cut(s) 36, 348, 762, 1311
CspAI ACCGGT 2 cut(s) 32, 344
CviAII CATG 6 cut(s) 77, 287, 305, 966, 1023, 1208
CviQI GTAC 4 cut(s) 36, 348, 762, 1311
DdeI CTNAG 3 cut(s) 509, 1007, 1113
DpnI GATC 9 cut(s) 174, 180, 396, 407, 446, 463, 839, 981, 1288
DpnII GATC 9 cut(s) 172, 178, 394, 405, 444, 461, 837, 979, 1286
DriI GACNNNNNGTC 1 cut(s) 295
Eam1104I CTCTTC 5 cut(s) 820, 860, 1116, 1258, 1275
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 5 cut(s) 820, 860, 1116, 1258, 1275
Eco147I AGGCCT 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 1250
Eco47I GGWCC 3 cut(s) 475, 514, 1003
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 1250
FaeI CATG 6 cut(s) 80, 290, 308, 969, 1026, 1211
FaqI GGGAC 2 cut(s) 517, 527
FatI CATG 6 cut(s) 76, 286, 304, 965, 1022, 1207
FbaI TGATCA 2 cut(s) 394, 979
Fnu4HI GCNGC 6 cut(s) 699, 1135, 1146, 1149, 1215, 1218
FokI GGATG 2 cut(s) 195, 796
FriOI GRGCYC 1 cut(s) 1250
Fsp4HI GCNGC 6 cut(s) 699, 1135, 1146, 1149, 1215, 1218
FspBI CTAG 2 cut(s) 684, 936
GluI GCNGC 6 cut(s) 699, 1135, 1146, 1149, 1215, 1218
HaeIII GGCC 2 cut(s) 106, 590
HapII CCGG 8 cut(s) 33, 345, 478, 517, 759, 805, 1001, 1041
HgaI GACGC 1 cut(s) 885
Hin1I GRCGYC 1 cut(s) 896
Hin1II CATG 6 cut(s) 80, 290, 308, 969, 1026, 1211
HinfI GANTC 3 cut(s) 380, 1049, 1060
HpaII CCGG 8 cut(s) 33, 345, 478, 517, 759, 805, 1001, 1041
HphI GGTGA 4 cut(s) 415, 431, 983, 1240
Hpy188I TCNGA 5 cut(s) 342, 666, 742, 837, 854
Hpy99I CGWCG 3 cut(s) 257, 301, 901
HpyAV CCTTC 2 cut(s) 410, 466
HpyCH4III ACNGT 6 cut(s) 101, 601, 662, 850, 957, 1159
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 6 cut(s) 138, 468, 565, 872, 890, 1217
HpyF10VI GCNNNNNNNGC 3 cut(s) 492, 571, 704
HpyF3I CTNAG 3 cut(s) 509, 1007, 1113
HpySE526I ACGT 1 cut(s) 570
Hsp92I GRCGYC 1 cut(s) 896
Hsp92II CATG 6 cut(s) 80, 290, 308, 969, 1026, 1211
Ksp22I TGATCA 2 cut(s) 394, 979
Kzo9I GATC 9 cut(s) 172, 178, 394, 405, 444, 461, 837, 979, 1286
LguI GCTCTTC 1 cut(s) 1116
LmnI GCTCC 3 cut(s) 626, 704, 1245
Lsp1109I GCAGC 5 cut(s) 1135, 1146, 1157, 1201, 1229
LweI GCATC 1 cut(s) 1201
MaeI CTAG 2 cut(s) 684, 936
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 2 cut(s) 643, 1228
MalI GATC 9 cut(s) 174, 180, 396, 407, 446, 463, 839, 981, 1288
MboI GATC 9 cut(s) 172, 178, 394, 405, 444, 461, 837, 979, 1286
MflI RGATCY 3 cut(s) 178, 444, 461
MhlI GDGCHC 2 cut(s) 576, 1250
MluCI AATT 9 cut(s) 46, 115, 133, 139, 1013, 1197, 1264, 1290, 1322
MlyI GAGTC 1 cut(s) 1054
MseI TTAA 4 cut(s) 114, 879, 1016, 1325
MslI CAYNNNNRTG 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 1148
MspI CCGG 8 cut(s) 33, 345, 478, 517, 759, 805, 1001, 1041
MvnI CGCG 1 cut(s) 776
MwoI GCNNNNNNNGC 3 cut(s) 492, 571, 704
NdeII GATC 9 cut(s) 172, 178, 394, 405, 444, 461, 837, 979, 1286
NlaIII CATG 6 cut(s) 80, 290, 308, 969, 1026, 1211
NlaIV GGNNCC 3 cut(s) 515, 712, 1247
NmeAIII GCCGAG 1 cut(s) 555
NmuCI GTSAC 1 cut(s) 1228
NruI TCGCGA 1 cut(s) 776
PagI TCATGA 3 cut(s) 76, 304, 1207
PaqCI CACCTGC 1 cut(s) 698
PceI AGGCCT 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 1116
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 666
PfeI GAWTC 2 cut(s) 380, 1049
PinAI ACCGGT 2 cut(s) 32, 344
PkrI GCNGC 6 cut(s) 700, 1136, 1147, 1150, 1216, 1219
PleI GAGTC 1 cut(s) 1054
PpsI GAGTC 1 cut(s) 1054
PshBI ATTAAT 1 cut(s) 1325
PspN4I GGNNCC 3 cut(s) 515, 712, 1247
PspPI GGNCC 3 cut(s) 475, 514, 1003
PstI CTGCAG 1 cut(s) 1219
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 3 cut(s) 178, 444, 461
PvuII CAGCTG 1 cut(s) 1148
RruI TCGCGA 1 cut(s) 776
RsaI GTAC 4 cut(s) 37, 349, 763, 1312
RsaNI GTAC 4 cut(s) 36, 348, 762, 1311
RseI CAYNNNNRTG 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 1116
SaqAI TTAA 4 cut(s) 114, 879, 1016, 1325
SatI GCNGC 6 cut(s) 699, 1135, 1146, 1149, 1215, 1218
Sau3AI GATC 9 cut(s) 172, 178, 394, 405, 444, 461, 837, 979, 1286
Sau96I GGNCC 3 cut(s) 475, 514, 1003
ScaI AGTACT 1 cut(s) 1312
SchI GAGTC 1 cut(s) 1054
SduI GDGCHC 2 cut(s) 576, 1250
SfaNI GCATC 1 cut(s) 1201
SfcI CTRYAG 1 cut(s) 1215
SinI GGWCC 3 cut(s) 475, 514, 1003
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 9 cut(s) 46, 115, 133, 139, 1013, 1197, 1264, 1290, 1322
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 4 cut(s) 144, 498, 696, 699
SspMI CTAG 2 cut(s) 684, 936
StuI AGGCCT 1 cut(s) 106
TaaI ACNGT 6 cut(s) 101, 601, 662, 850, 957, 1159
TaiI ACGT 1 cut(s) 573
TaqI TCGA 2 cut(s) 537, 899
TasI AATT 9 cut(s) 46, 115, 133, 139, 1013, 1197, 1264, 1290, 1322
TatI WGTACW 1 cut(s) 1310
TauI GCSGC 1 cut(s) 701
TfiI GAWTC 2 cut(s) 380, 1049
Tru1I TTAA 4 cut(s) 114, 879, 1016, 1325
Tru9I TTAA 4 cut(s) 114, 879, 1016, 1325
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 1 cut(s) 1228
TseI GCWGC 5 cut(s) 1134, 1145, 1148, 1214, 1217
Tsp45I GTSAC 1 cut(s) 1228
TspDTI ATGAA 8 cut(s) 197, 293, 321, 671, 1010, 1011, 1157, 1169
TspRI CASTG 1 cut(s) 364
VpaK11BI GGWCC 3 cut(s) 475, 514, 1003
VspI ATTAAT 1 cut(s) 1325
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XspI CTAG 2 cut(s) 684, 936
ZrmI AGTACT 1 cut(s) 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.