transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18550 AT3G18550 AT3G18550 AT3G18550 |
| fragaria_vesca | FvH4_5g12710 |
| malus_domestica | MD06G1211100.v1.1 MD14G1221800.v1.1 |
| prunus_persica | Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1 Prupe.5G217200_v2.0.a1 |
| pyrus_communis | pycom06g18840 pycom14g18340 |
| rosa_chinensis | RchiOBHm_Chr7g0184601 |
| rosa_laevigata | RLG00000004965 |
| rosa_multiflora | Rmu_co8093794.1_g000001 Rmu_ssc0000289.1_g000032 Rmu_ssc0000289.1_g000033 |
| rosa_roxburghii | Rroxscaffold_3G00269490 |
| rosa_samantha | Rh7AG079000 Rh7BG068300 Rh7CG069100 Rh7DG068400 |
| rosa_wichuraiana | Rw7G005630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 72, 1380 |
| AccII | CGCG | 1 cut(s) | 620 |
| AciI | CCGC | 7 cut(s) | 317, 526, 565, 595, 895, 918, 994 |
| AclWI | GGATC | 5 cut(s) | 490, 492, 856, 1221, 1247 |
| AcsI | RAATTY | 1 cut(s) | 1320 |
| AcuI | CTGAAG | 1 cut(s) | 855 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1210 |
| AgsI | TTSAA | 5 cut(s) | 587, 936, 1091, 1184, 1290 |
| AhlI | ACTAGT | 1 cut(s) | 691 |
| AluBI | AGCT | 6 cut(s) | 362, 720, 855, 941, 1109, 1200 |
| AluI | AGCT | 6 cut(s) | 362, 720, 855, 941, 1109, 1200 |
| Alw21I | GWGCWC | 2 cut(s) | 722, 1335 |
| Alw26I | GTCTC | 3 cut(s) | 516, 585, 693 |
| AlwI | GGATC | 5 cut(s) | 490, 492, 856, 1221, 1247 |
| Ama87I | CYCGRG | 2 cut(s) | 499, 549 |
| AoxI | GGCC | 5 cut(s) | 95, 196, 553, 636, 669 |
| ApeKI | GCWGC | 7 cut(s) | 368, 622, 785, 855, 991, 1197, 1200 |
| ApoI | RAATTY | 1 cut(s) | 1320 |
| AseI | ATTAAT | 2 cut(s) | 540, 810 |
| AspLEI | GCGC | 1 cut(s) | 622 |
| AspS9I | GGNCC | 2 cut(s) | 197, 562 |
| AsuHPI | GGTGA | 6 cut(s) | 197, 284, 845, 917, 1058, 1273 |
| AsuII | TTCGAA | 1 cut(s) | 243 |
| AvaI | CYCGRG | 2 cut(s) | 499, 549 |
| AvaII | GGWCC | 1 cut(s) | 562 |
| AxyI | CCTNAGG | 1 cut(s) | 557 |
| BanII | GRGCYC | 3 cut(s) | 722, 1085, 1283 |
| BauI | CACGAG | 1 cut(s) | 1175 |
| BbsI | GAAGAC | 2 cut(s) | 252, 920 |
| Bbv12I | GWGCWC | 2 cut(s) | 722, 1335 |
| BbvI | GCAGC | 7 cut(s) | 355, 609, 772, 842, 1003, 1187, 1209 |
| BccI | CCATC | 7 cut(s) | 216, 285, 297, 402, 812, 824, 1344 |
| BclI | TGATCA | 3 cut(s) | 1024, 1048, 1234 |
| BcoDI | GTCTC | 3 cut(s) | 516, 585, 693 |
| BcuI | ACTAGT | 1 cut(s) | 691 |
| BfaI | CTAG | 1 cut(s) | 692 |
| BisI | GCNGC | 8 cut(s) | 317, 369, 623, 786, 856, 992, 1198, 1201 |
| BlsI | GCNGC | 8 cut(s) | 318, 370, 624, 787, 857, 993, 1199, 1202 |
| Bme18I | GGWCC | 1 cut(s) | 562 |
| BmeT110I | CYCGRG | 2 cut(s) | 499, 549 |
| BmgT120I | GGNCC | 2 cut(s) | 197, 562 |
| BmiI | GGNNCC | 3 cut(s) | 563, 1082, 1280 |
| BmrI | ACTGGG | 1 cut(s) | 1104 |
| BmsI | GCATC | 1 cut(s) | 1315 |
| BmuI | ACTGGG | 1 cut(s) | 1104 |
| BoxI | GACNNNNGTC | 1 cut(s) | 396 |
| BpiI | GAAGAC | 2 cut(s) | 252, 920 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 565, 597 |
| Bpu10I | CCTNAGC | 2 cut(s) | 382, 1061 |
| Bpu14I | TTCGAA | 1 cut(s) | 243 |
| BsaBI | GATNNNNATC | 1 cut(s) | 393 |
| BsaI | GGTCTC | 1 cut(s) | 516 |
| BsaJI | CCNNGG | 3 cut(s) | 550, 1360, 1370 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1210 |
| Bse118I | RCCGGY | 2 cut(s) | 93, 897 |
| Bse1I | ACTGG | 2 cut(s) | 43, 1099 |
| Bse21I | CCTNAGG | 1 cut(s) | 557 |
| Bse8I | GATNNNNATC | 1 cut(s) | 393 |
| BseDI | CCNNGG | 3 cut(s) | 550, 1360, 1370 |
| BseGI | GGATG | 4 cut(s) | 139, 208, 228, 1216 |
| BseJI | GATNNNNATC | 1 cut(s) | 393 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1210 |
| BseMII | CTCAG | 3 cut(s) | 571, 741, 1052 |
| BseNI | ACTGG | 2 cut(s) | 43, 1099 |
| BseXI | GCAGC | 7 cut(s) | 355, 609, 772, 842, 1003, 1187, 1209 |
| BseYI | CCCAGC | 1 cut(s) | 1109 |
| BsgI | GTGCAG | 1 cut(s) | 608 |
| Bsh1236I | CGCG | 1 cut(s) | 620 |
| BshFI | GGCC | 5 cut(s) | 97, 198, 555, 638, 671 |
| BsiHKAI | GWGCWC | 2 cut(s) | 722, 1335 |
| BsiHKCI | CYCGRG | 2 cut(s) | 499, 549 |
| BsiSI | CCGG | 2 cut(s) | 94, 898 |
| BslFI | GGGAC | 2 cut(s) | 575, 1126 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1210 |
| BsmAI | GTCTC | 3 cut(s) | 516, 585, 693 |
| BsmFI | GGGAC | 2 cut(s) | 575, 1126 |
| BsnI | GGCC | 5 cut(s) | 97, 198, 555, 638, 671 |
| Bso31I | GGTCTC | 1 cut(s) | 516 |
| BsoBI | CYCGRG | 2 cut(s) | 499, 549 |
| Bsp119I | TTCGAA | 1 cut(s) | 243 |
| Bsp1286I | GDGCHC | 4 cut(s) | 722, 1085, 1283, 1335 |
| Bsp143I | GATC | 8 cut(s) | 484, 495, 861, 1024, 1048, 1213, 1234, 1252 |
| Bsp19I | CCATGG | 1 cut(s) | 1370 |
| BspACI | CCGC | 7 cut(s) | 317, 526, 565, 595, 895, 918, 994 |
| BspANI | GGCC | 5 cut(s) | 97, 198, 555, 638, 671 |
| BspCNI | CTCAG | 3 cut(s) | 570, 742, 1053 |
| BspFNI | CGCG | 1 cut(s) | 620 |
| BspLI | GGNNCC | 3 cut(s) | 563, 1082, 1280 |
| BspPI | GGATC | 5 cut(s) | 490, 492, 856, 1221, 1247 |
| BspT104I | TTCGAA | 1 cut(s) | 243 |
| BspTNI | GGTCTC | 1 cut(s) | 516 |
| BsrFI | RCCGGY | 2 cut(s) | 93, 897 |
| BsrI | ACTGG | 2 cut(s) | 43, 1099 |
| BssAI | RCCGGY | 2 cut(s) | 93, 897 |
| BssECI | CCNNGG | 3 cut(s) | 550, 1360, 1370 |
| BssMI | GATC | 8 cut(s) | 484, 495, 861, 1024, 1048, 1213, 1234, 1252 |
| BssSI | CACGAG | 1 cut(s) | 1175 |
| BssT1I | CCWWGG | 2 cut(s) | 1360, 1370 |
| Bst2BI | CACGAG | 1 cut(s) | 1175 |
| Bst4CI | ACNGT | 1 cut(s) | 649 |
| Bst6I | CTCTTC | 2 cut(s) | 165, 269 |
| BstBI | TTCGAA | 1 cut(s) | 243 |
| BstC8I | GCNNGC | 5 cut(s) | 95, 595, 640, 895, 899 |
| BstDEI | CTNAG | 5 cut(s) | 382, 557, 750, 1032, 1061 |
| BstDSI | CCRYGG | 1 cut(s) | 1370 |
| BstF5I | GGATG | 4 cut(s) | 139, 208, 228, 1216 |
| BstFNI | CGCG | 1 cut(s) | 620 |
| BstHHI | GCGC | 1 cut(s) | 622 |
| BstKTI | GATC | 8 cut(s) | 487, 498, 864, 1027, 1051, 1216, 1237, 1255 |
| BstMAI | GTCTC | 3 cut(s) | 516, 585, 693 |
| BstMBI | GATC | 8 cut(s) | 484, 495, 861, 1024, 1048, 1213, 1234, 1252 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 368, 619, 997 |
| BstNSI | RCATGY | 1 cut(s) | 316 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 396 |
| BstUI | CGCG | 1 cut(s) | 620 |
| BstV1I | GCAGC | 7 cut(s) | 355, 609, 772, 842, 1003, 1187, 1209 |
| BstV2I | GAAGAC | 2 cut(s) | 252, 920 |
| BstX2I | RGATCY | 2 cut(s) | 495, 861 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1361 |
| BstYI | RGATCY | 2 cut(s) | 495, 861 |
| Bsu36I | CCTNAGG | 1 cut(s) | 557 |
| BsuRI | GGCC | 5 cut(s) | 97, 198, 555, 638, 671 |
| BtgI | CCRYGG | 1 cut(s) | 1370 |
| BtsCI | GGATG | 4 cut(s) | 139, 208, 228, 1216 |
| Cac8I | GCNNGC | 5 cut(s) | 95, 595, 640, 895, 899 |
| CfoI | GCGC | 1 cut(s) | 622 |
| Cfr10I | RCCGGY | 2 cut(s) | 93, 897 |
| Cfr13I | GGNCC | 2 cut(s) | 197, 562 |
| CseI | GACGC | 2 cut(s) | 626, 1006 |
| DdeI | CTNAG | 5 cut(s) | 382, 557, 750, 1032, 1061 |
| DpnI | GATC | 8 cut(s) | 486, 497, 863, 1026, 1050, 1215, 1236, 1254 |
| DpnII | GATC | 8 cut(s) | 484, 495, 861, 1024, 1048, 1213, 1234, 1252 |
| Eam1104I | CTCTTC | 2 cut(s) | 165, 269 |
| EarI | CTCTTC | 2 cut(s) | 165, 269 |
| Ecl136II | GAGCTC | 1 cut(s) | 720 |
| Eco130I | CCWWGG | 2 cut(s) | 1360, 1370 |
| Eco147I | AGGCCT | 1 cut(s) | 555 |
| Eco24I | GRGCYC | 3 cut(s) | 722, 1085, 1283 |
| Eco31I | GGTCTC | 1 cut(s) | 516 |
| Eco32I | GATATC | 1 cut(s) | 768 |
| Eco47I | GGWCC | 1 cut(s) | 562 |
| Eco53kI | GAGCTC | 1 cut(s) | 720 |
| Eco57I | CTGAAG | 1 cut(s) | 855 |
| Eco81I | CCTNAGG | 1 cut(s) | 557 |
| Eco88I | CYCGRG | 2 cut(s) | 499, 549 |
| EcoICRI | GAGCTC | 1 cut(s) | 720 |
| EcoO109I | RGGNCCY | 1 cut(s) | 197 |
| EcoRV | GATATC | 1 cut(s) | 768 |
| EcoT14I | CCWWGG | 2 cut(s) | 1360, 1370 |
| EcoT38I | GRGCYC | 3 cut(s) | 722, 1085, 1283 |
| ErhI | CCWWGG | 2 cut(s) | 1360, 1370 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 496, 528 |
| FaqI | GGGAC | 2 cut(s) | 575, 1126 |
| FauI | CCCGC | 2 cut(s) | 602, 902 |
| FbaI | TGATCA | 3 cut(s) | 1024, 1048, 1234 |
| FblI | GTMKAC | 2 cut(s) | 72, 1380 |
| Fnu4HI | GCNGC | 8 cut(s) | 317, 369, 623, 786, 856, 992, 1198, 1201 |
| FokI | GGATG | 4 cut(s) | 126, 195, 215, 1203 |
| FriOI | GRGCYC | 3 cut(s) | 722, 1085, 1283 |
| Fsp4HI | GCNGC | 8 cut(s) | 317, 369, 623, 786, 856, 992, 1198, 1201 |
| FspBI | CTAG | 1 cut(s) | 692 |
| GlaI | GCGC | 1 cut(s) | 621 |
| GluI | GCNGC | 8 cut(s) | 317, 369, 623, 786, 856, 992, 1198, 1201 |
| GsaI | CCCAGC | 1 cut(s) | 1113 |
| HaeIII | GGCC | 5 cut(s) | 97, 198, 555, 638, 671 |
| HapII | CCGG | 2 cut(s) | 94, 898 |
| HgaI | GACGC | 2 cut(s) | 626, 1006 |
| HhaI | GCGC | 1 cut(s) | 622 |
| Hin6I | GCGC | 1 cut(s) | 620 |
| HinP1I | GCGC | 1 cut(s) | 620 |
| HincII | GTYRAC | 1 cut(s) | 73 |
| HindII | GTYRAC | 1 cut(s) | 73 |
| HindIII | AAGCTT | 1 cut(s) | 939 |
| HinfI | GANTC | 5 cut(s) | 326, 449, 752, 1103, 1114 |
| HpaII | CCGG | 2 cut(s) | 94, 898 |
| HphI | GGTGA | 6 cut(s) | 197, 284, 845, 917, 1058, 1273 |
| Hpy166II | GTNNAC | 2 cut(s) | 73, 1381 |
| Hpy188I | TCNGA | 2 cut(s) | 402, 751 |
| Hpy188III | TCNNGA | 7 cut(s) | 499, 584, 685, 945, 1052, 1175, 1220 |
| Hpy8I | GTNNAC | 2 cut(s) | 73, 1381 |
| Hpy99I | CGWCG | 2 cut(s) | 254, 257 |
| HpyAV | CCTTC | 5 cut(s) | 146, 188, 501, 879, 1296 |
| HpyCH4III | ACNGT | 1 cut(s) | 649 |
| HpyCH4IV | ACGT | 1 cut(s) | 255 |
| HpyCH4V | TGCA | 7 cut(s) | 516, 613, 625, 705, 788, 1306, 1346 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 368, 619, 997 |
| HpyF3I | CTNAG | 5 cut(s) | 382, 557, 750, 1032, 1061 |
| HpySE526I | ACGT | 1 cut(s) | 255 |
| HspAI | GCGC | 1 cut(s) | 620 |
| KroI | GCCGGC | 2 cut(s) | 93, 897 |
| KroNI | GCCGGC | 2 cut(s) | 95, 899 |
| Ksp22I | TGATCA | 3 cut(s) | 1024, 1048, 1234 |
| Kzo9I | GATC | 8 cut(s) | 484, 495, 861, 1024, 1048, 1213, 1234, 1252 |
| LmnI | GCTCC | 2 cut(s) | 1080, 1278 |
| Lsp1109I | GCAGC | 7 cut(s) | 355, 609, 772, 842, 1003, 1187, 1209 |
| LweI | GCATC | 1 cut(s) | 1315 |
| MaeI | CTAG | 1 cut(s) | 692 |
| MaeII | ACGT | 1 cut(s) | 255 |
| MalI | GATC | 8 cut(s) | 486, 497, 863, 1026, 1050, 1215, 1236, 1254 |
| MboI | GATC | 8 cut(s) | 484, 495, 861, 1024, 1048, 1213, 1234, 1252 |
| MfeI | CAATTG | 1 cut(s) | 902 |
| MflI | RGATCY | 2 cut(s) | 495, 861 |
| MhlI | GDGCHC | 4 cut(s) | 722, 1085, 1283, 1335 |
| MluCI | AATT | 7 cut(s) | 47, 130, 151, 902, 1150, 1320, 1355 |
| MlyI | GAGTC | 3 cut(s) | 320, 761, 1108 |
| MmeI | TCCRAC | 2 cut(s) | 292, 477 |
| MroNI | GCCGGC | 2 cut(s) | 93, 897 |
| MseI | TTAA | 4 cut(s) | 122, 432, 540, 810 |
| MslI | CAYNNNNRTG | 4 cut(s) | 282, 294, 300, 306 |
| MspA1I | CMGCKG | 3 cut(s) | 994, 1109, 1200 |
| MspI | CCGG | 2 cut(s) | 94, 898 |
| MunI | CAATTG | 1 cut(s) | 902 |
| MvnI | CGCG | 1 cut(s) | 620 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 368, 619, 997 |
| NaeI | GCCGGC | 2 cut(s) | 95, 899 |
| NcoI | CCATGG | 1 cut(s) | 1370 |
| NdeII | GATC | 8 cut(s) | 484, 495, 861, 1024, 1048, 1213, 1234, 1252 |
| NgoMIV | GCCGGC | 2 cut(s) | 93, 897 |
| NlaIV | GGNNCC | 3 cut(s) | 563, 1082, 1280 |
| NspI | RCATGY | 1 cut(s) | 316 |
| NspV | TTCGAA | 1 cut(s) | 243 |
| PceI | AGGCCT | 1 cut(s) | 555 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 51, 249 |
| PdiI | GCCGGC | 2 cut(s) | 95, 899 |
| PfeI | GAWTC | 2 cut(s) | 449, 1103 |
| PflFI | GACNNNGTC | 1 cut(s) | 302 |
| PkrI | GCNGC | 8 cut(s) | 318, 370, 624, 787, 857, 993, 1199, 1202 |
| PleI | GAGTC | 3 cut(s) | 320, 760, 1108 |
| PpsI | GAGTC | 3 cut(s) | 320, 760, 1108 |
| PshAI | GACNNNNGTC | 1 cut(s) | 396 |
| PshBI | ATTAAT | 2 cut(s) | 540, 810 |
| Psp124BI | GAGCTC | 1 cut(s) | 722 |
| PspFI | CCCAGC | 1 cut(s) | 1109 |
| PspN4I | GGNNCC | 3 cut(s) | 563, 1082, 1280 |
| PspPI | GGNCC | 2 cut(s) | 197, 562 |
| PsuI | RGATCY | 2 cut(s) | 495, 861 |
| PsyI | GACNNNGTC | 1 cut(s) | 302 |
| PvuII | CAGCTG | 2 cut(s) | 1109, 1200 |
| RseI | CAYNNNNRTG | 4 cut(s) | 282, 294, 300, 306 |
| SacI | GAGCTC | 1 cut(s) | 722 |
| SalI | GTCGAC | 1 cut(s) | 71 |
| SaqAI | TTAA | 4 cut(s) | 122, 432, 540, 810 |
| SatI | GCNGC | 8 cut(s) | 317, 369, 623, 786, 856, 992, 1198, 1201 |
| Sau3AI | GATC | 8 cut(s) | 484, 495, 861, 1024, 1048, 1213, 1234, 1252 |
| Sau96I | GGNCC | 2 cut(s) | 197, 562 |
| SchI | GAGTC | 3 cut(s) | 320, 761, 1108 |
| SduI | GDGCHC | 4 cut(s) | 722, 1085, 1283, 1335 |
| SfaNI | GCATC | 1 cut(s) | 1315 |
| SfuI | TTCGAA | 1 cut(s) | 243 |
| SinI | GGWCC | 1 cut(s) | 562 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 282, 294, 300, 306 |
| SpeI | ACTAGT | 1 cut(s) | 691 |
| Sse9I | AATT | 7 cut(s) | 47, 130, 151, 902, 1150, 1320, 1355 |
| SseBI | AGGCCT | 1 cut(s) | 555 |
| SsiI | CCGC | 7 cut(s) | 317, 526, 565, 595, 895, 918, 994 |
| SspI | AATATT | 3 cut(s) | 430, 814, 1293 |
| SspMI | CTAG | 1 cut(s) | 692 |
| SstI | GAGCTC | 1 cut(s) | 722 |
| StuI | AGGCCT | 1 cut(s) | 555 |
| StyI | CCWWGG | 2 cut(s) | 1360, 1370 |
| TaaI | ACNGT | 1 cut(s) | 649 |
| TaiI | ACGT | 1 cut(s) | 258 |
| TaqI | TCGA | 3 cut(s) | 72, 243, 944 |
| TasI | AATT | 7 cut(s) | 47, 130, 151, 902, 1150, 1320, 1355 |
| TauI | GCSGC | 1 cut(s) | 319 |
| TfiI | GAWTC | 2 cut(s) | 449, 1103 |
| Tru1I | TTAA | 4 cut(s) | 122, 432, 540, 810 |
| Tru9I | TTAA | 4 cut(s) | 122, 432, 540, 810 |
| TseI | GCWGC | 7 cut(s) | 368, 622, 785, 855, 991, 1197, 1200 |
| TspDTI | ATGAA | 5 cut(s) | 123, 128, 491, 1143, 1160 |
| Tth111I | GACNNNGTC | 1 cut(s) | 302 |
| VpaK11BI | GGWCC | 1 cut(s) | 562 |
| VspI | ATTAAT | 2 cut(s) | 540, 810 |
| XapI | RAATTY | 1 cut(s) | 1320 |
| XceI | RCATGY | 1 cut(s) | 316 |
| XmiI | GTMKAC | 2 cut(s) | 72, 1380 |
| XspI | CTAG | 1 cut(s) | 692 |