Rroxscaffold_3G00269490
TCP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
62357311 .. 62359729
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269490.1

Sequence Viewer

Length: 1389 bp
ATGTTTTCTTATAGCTCAAACGCTATTAGCACCGGTACTACTGGCAATTACTACGAACCTGCCGTGCCTTTTCCTCATGACCAATCCTTTTTGATCCACAGTAGGCCTTTTCTTAATTCTACTACCAATCCAAATTGCAATTCCGCTTCAGTTATTTCCAATTCCAAACAAGATCAAGATCTACAAGAAGACCCTCATCATCATATTCATCCTCCTTTGTCTTTATTCTACTTCCCCTCTCCCTTTGGAGACGACGATGTTTTACTCCACCAACACCACCACCACCACCACCATGACCTGTCGTCGCTTCATGAAAATACCTTATTTGCCCATCATCATCATCATCAGACCGGTACTCCTCTCACTGCTACAATGGTGGAGGGGGATTCTAACAAAGATCATCAGGTGGTGATCGGTAAGGAAGGTGAGCAACAACAACAACAACAGAAACAGATCCCGATGACGAGAAGATCTTGCAAGAAGGACCGGCACAGCAAGATTAGCACCGCCCGAGGACTGAGGGACCGGAGAATGAGATTGTCCCTCGATGTTGCCAAAAAGTTCTTTGGTTTGCAAGACGTGCTCGGCTTTGACAAGGCCAGCAAGACGGTGGAGTGGTTGCTCAATCAGGCAGGACCTGAAATCAAGAAAGTAACAAGAGAAAGGAACGGTCAGAACGAAAACCAAAGCTCTAGCACTACTACCGCCGCAGGAGCAGGTGCCAGAGCCAGAACCACATCTTCCATATCCGAGTGTGAAGTTGTATCCGGTACAGATGAGGTCGCGACTGATGATATTATTGATAAGGTAAGCCGGACATCATCTTCTTCTTGTGCCAAAAATCGGATCAAAAGGACTGTCAGGCAACCAAAGAAGAGTGCATTGTTTAACCCTCTTGCAAAGGCGTCGAGGGAAATGGCAAGAGCAAGAGCAAGAGAAAGAACTAGAGAAAAGATGGGGAGACAGTCAAAGTCATGTGGTGATGTTGATCAGGCAAAGAAGATGAAGCCGGACCTGAGCCAATTACGTTCATGGAATACATTTGAAACCGGAGAAGAATCTGGAGCGACTCAAAGCCACAACAACAACATCAACAATCATTCTCCATTGGAAGCACTTGCTGAGGTTGAAGAGCCAATAAGCAGCTTCCAAGCAGCTGCGACTACGGTAGTAGTTCATCGTCATATTCATCAAGACTTGATTGAAATTGATGGTCATGATGCTGCAGCTAACTTGGTGACAATGGGAAAGTGGAGCCCCTCTTCCACTTTCAATTCTCTTCAAAATACTTCCGGATCAATTTCACAAGAGCAACATCAGTTTGCAGACTTTCAATTCTATGGAAAACCATGGGAGGTCTACAACAGTAGTACTCATAACCTTTTTTAA

Protein Analysis

462

Amino Acids

51.71

Weight (kDa)

7.47

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 159 - 320 4.5e-44 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 707
Acc36I ACCTGC 2 cut(s) 67, 707
AccB1I GGYRCC 1 cut(s) 719
AccI GTMKAC 1 cut(s) 1359
AccII CGCG 1 cut(s) 785
AccIII TCCGGA 1 cut(s) 1292
AciI CCGC 4 cut(s) 144, 507, 705, 708
AclWI GGATC 4 cut(s) 88, 448, 854, 1303
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 905
AfaI GTAC 4 cut(s) 37, 355, 772, 1372
AfiI CCNNNNNNNGG 1 cut(s) 843
AgeI ACCGGT 2 cut(s) 32, 350
AgsI TTSAA 6 cut(s) 1046, 1130, 1205, 1273, 1283, 1334
AhdI GACNNNNNGTC 1 cut(s) 301
AjiI CACGTC 1 cut(s) 580
AjuI GAANNNNNNNTTGG 2 cut(s) 124, 156
AluBI AGCT 5 cut(s) 15, 690, 1146, 1157, 1229
AluI AGCT 5 cut(s) 15, 690, 1146, 1157, 1229
Alw21I GWGCWC 1 cut(s) 585
Alw26I GTCTC 2 cut(s) 243, 955
AlwI GGATC 4 cut(s) 88, 448, 854, 1303
AlwNI CAGNNNCTG 1 cut(s) 638
Ama87I CYCGRG 1 cut(s) 510
Aor13HI TCCGGA 1 cut(s) 1292
AoxI GGCC 2 cut(s) 104, 597
ApeKI GCWGC 5 cut(s) 1143, 1154, 1157, 1223, 1226
ArsI GACNNNNNNTTYG 2 cut(s) 843, 875
AsiGI ACCGGT 2 cut(s) 32, 350
AspS9I GGNCC 4 cut(s) 484, 523, 635, 1012
AsuHPI GGTGA 4 cut(s) 421, 437, 992, 1249
AvaI CYCGRG 1 cut(s) 510
AvaII GGWCC 4 cut(s) 484, 523, 635, 1012
BanI GGYRCC 1 cut(s) 719
BanII GRGCYC 1 cut(s) 1259
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 585
BbvCI CCTCAGC 1 cut(s) 1122
BbvI GCAGC 5 cut(s) 1144, 1155, 1166, 1210, 1238
BccI CCATC 3 cut(s) 339, 949, 1205
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 888, 922
BciVI GTATCC 1 cut(s) 775
BclI TGATCA 1 cut(s) 988
BcoDI GTCTC 2 cut(s) 243, 955
BfaI CTAG 2 cut(s) 693, 945
BfmI CTRYAG 1 cut(s) 1224
BfuAI ACCTGC 2 cut(s) 67, 707
BfuI GTATCC 1 cut(s) 775
BglII AGATCT 2 cut(s) 178, 470
BisI GCNGC 6 cut(s) 708, 1144, 1155, 1158, 1224, 1227
BlsI GCNGC 6 cut(s) 709, 1145, 1156, 1159, 1225, 1228
BmcAI AGTACT 1 cut(s) 1372
Bme18I GGWCC 4 cut(s) 484, 523, 635, 1012
BmeRI GACNNNNNGTC 1 cut(s) 301
BmeT110I CYCGRG 1 cut(s) 510
BmgBI CACGTC 1 cut(s) 580
BmgT120I GGNCC 4 cut(s) 484, 523, 635, 1012
BmiI GGNNCC 3 cut(s) 524, 721, 1256
BmsI GCATC 1 cut(s) 1210
BpiI GAAGAC 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 1083
Bpu10I CCTNAGC 2 cut(s) 1016, 1122
BsaBI GATNNNNATC 2 cut(s) 177, 987
BsaHI GRCGYC 1 cut(s) 905
BsaJI CCNNGG 2 cut(s) 511, 1349
BsaWI WCCGGW 6 cut(s) 32, 350, 525, 767, 1049, 1292
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 843
Bse118I RCCGGY 3 cut(s) 32, 350, 486
Bse1I ACTGG 1 cut(s) 46
Bse8I GATNNNNATC 2 cut(s) 177, 987
BseAI TCCGGA 1 cut(s) 1292
BseDI CCNNGG 2 cut(s) 511, 1349
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 2 cut(s) 177, 987
BseLI CCNNNNNNNGG 1 cut(s) 843
BseMII CTCAG 3 cut(s) 509, 1007, 1113
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 5 cut(s) 1144, 1155, 1166, 1210, 1238
Bsh1236I CGCG 1 cut(s) 785
BshFI GGCC 2 cut(s) 106, 599
BshNI GGYRCC 1 cut(s) 719
BshTI ACCGGT 2 cut(s) 32, 350
BsiHKAI GWGCWC 1 cut(s) 585
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 9 cut(s) 33, 351, 487, 526, 768, 814, 1010, 1050, 1293
BslFI GGGAC 2 cut(s) 526, 536
BslI CCNNNNNNNGG 1 cut(s) 843
BsmAI GTCTC 2 cut(s) 243, 955
BsmBI CGTCTC 1 cut(s) 243
BsmFI GGGAC 2 cut(s) 526, 536
BsnI GGCC 2 cut(s) 106, 599
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 2 cut(s) 585, 1259
Bsp13I TCCGGA 1 cut(s) 1292
Bsp19I CCATGG 1 cut(s) 1349
Bsp68I TCGCGA 1 cut(s) 785
BspACI CCGC 4 cut(s) 144, 507, 705, 708
BspANI GGCC 2 cut(s) 106, 599
BspCNI CTCAG 3 cut(s) 510, 1008, 1114
BspEI TCCGGA 1 cut(s) 1292
BspFNI CGCG 1 cut(s) 785
BspHI TCATGA 3 cut(s) 76, 310, 1216
BspLI GGNNCC 3 cut(s) 524, 721, 1256
BspMAI CTGCAG 1 cut(s) 1228
BspMI ACCTGC 2 cut(s) 67, 707
BspPI GGATC 4 cut(s) 88, 448, 854, 1303
BspQI GCTCTTC 1 cut(s) 1125
BspT107I GGYRCC 1 cut(s) 719
BsrFI RCCGGY 3 cut(s) 32, 350, 486
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 3 cut(s) 32, 350, 486
BssECI CCNNGG 2 cut(s) 511, 1349
BssNI GRCGYC 1 cut(s) 905
BssT1I CCWWGG 1 cut(s) 1349
Bst4CI ACNGT 7 cut(s) 101, 610, 671, 859, 966, 1168, 1367
Bst6I CTCTTC 4 cut(s) 869, 1125, 1267, 1284
BstACI GRCGYC 1 cut(s) 905
BstAPI GCANNNNNTGC 1 cut(s) 580
BstC8I GCNNGC 1 cut(s) 601
BstDEI CTNAG 3 cut(s) 518, 1016, 1122
BstDSI CCRYGG 1 cut(s) 1349
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 1 cut(s) 785
BstMAI GTCTC 2 cut(s) 243, 955
BstMWI GCNNNNNNNGC 3 cut(s) 501, 580, 713
BstSFI CTRYAG 1 cut(s) 1224
BstUI CGCG 1 cut(s) 785
BstV1I GCAGC 5 cut(s) 1144, 1155, 1166, 1210, 1238
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 3 cut(s) 178, 453, 470
BstYI RGATCY 3 cut(s) 178, 453, 470
BsuI GTATCC 1 cut(s) 775
BsuRI GGCC 2 cut(s) 106, 599
BtgI CCRYGG 1 cut(s) 1349
BtrI CACGTC 1 cut(s) 580
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
BtuMI TCGCGA 1 cut(s) 785
BveI ACCTGC 2 cut(s) 67, 707
Cac8I GCNNGC 1 cut(s) 601
CaiI CAGNNNCTG 1 cut(s) 638
CciI TCATGA 3 cut(s) 76, 310, 1216
Cfr10I RCCGGY 3 cut(s) 32, 350, 486
Cfr13I GGNCC 4 cut(s) 484, 523, 635, 1012
CseI GACGC 1 cut(s) 894
Csp6I GTAC 4 cut(s) 36, 354, 771, 1371
CspAI ACCGGT 2 cut(s) 32, 350
CviAII CATG 7 cut(s) 77, 293, 311, 975, 1032, 1217, 1350
CviQI GTAC 4 cut(s) 36, 354, 771, 1371
DdeI CTNAG 3 cut(s) 518, 1016, 1122
DriI GACNNNNNGTC 1 cut(s) 301
Eam1104I CTCTTC 4 cut(s) 869, 1125, 1267, 1284
Eam1105I GACNNNNNGTC 1 cut(s) 301
EarI CTCTTC 4 cut(s) 869, 1125, 1267, 1284
Eco130I CCWWGG 1 cut(s) 1349
Eco147I AGGCCT 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 1259
Eco47I GGWCC 4 cut(s) 484, 523, 635, 1012
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 510
EcoO109I RGGNCCY 1 cut(s) 635
EcoT14I CCWWGG 1 cut(s) 1349
EcoT38I GRGCYC 1 cut(s) 1259
ErhI CCWWGG 1 cut(s) 1349
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 7 cut(s) 80, 296, 314, 978, 1035, 1220, 1353
FaqI GGGAC 2 cut(s) 526, 536
FatI CATG 7 cut(s) 76, 292, 310, 974, 1031, 1216, 1349
FbaI TGATCA 1 cut(s) 988
FblI GTMKAC 1 cut(s) 1359
Fnu4HI GCNGC 6 cut(s) 708, 1144, 1155, 1158, 1224, 1227
FokI GGATG 1 cut(s) 195
FriOI GRGCYC 1 cut(s) 1259
Fsp4HI GCNGC 6 cut(s) 708, 1144, 1155, 1158, 1224, 1227
FspBI CTAG 2 cut(s) 693, 945
GluI GCNGC 6 cut(s) 708, 1144, 1155, 1158, 1224, 1227
GsuI CTGGAG 1 cut(s) 1083
HaeIII GGCC 2 cut(s) 106, 599
HapII CCGG 9 cut(s) 33, 351, 487, 526, 768, 814, 1010, 1050, 1293
HgaI GACGC 1 cut(s) 894
Hin1I GRCGYC 1 cut(s) 905
Hin1II CATG 7 cut(s) 80, 296, 314, 978, 1035, 1220, 1353
HinfI GANTC 3 cut(s) 386, 1058, 1069
HpaII CCGG 9 cut(s) 33, 351, 487, 526, 768, 814, 1010, 1050, 1293
HphI GGTGA 4 cut(s) 421, 437, 992, 1249
Hpy166II GTNNAC 1 cut(s) 1360
Hpy188I TCNGA 4 cut(s) 348, 675, 751, 846
Hpy8I GTNNAC 1 cut(s) 1360
Hpy99I CGWCG 3 cut(s) 257, 307, 910
HpyAV CCTTC 2 cut(s) 416, 475
HpyCH4III ACNGT 7 cut(s) 101, 610, 671, 859, 966, 1168, 1367
HpyCH4IV ACGT 2 cut(s) 579, 1027
HpyCH4V TGCA 7 cut(s) 138, 477, 574, 881, 899, 1226, 1325
HpyF10VI GCNNNNNNNGC 3 cut(s) 501, 580, 713
HpyF3I CTNAG 3 cut(s) 518, 1016, 1122
HpySE526I ACGT 2 cut(s) 579, 1027
Hsp92I GRCGYC 1 cut(s) 905
Hsp92II CATG 7 cut(s) 80, 296, 314, 978, 1035, 1220, 1353
Kpn2I TCCGGA 1 cut(s) 1292
Ksp22I TGATCA 1 cut(s) 988
LguI GCTCTTC 1 cut(s) 1125
LmnI GCTCC 3 cut(s) 713, 1064, 1254
Lsp1109I GCAGC 5 cut(s) 1144, 1155, 1166, 1210, 1238
LweI GCATC 1 cut(s) 1210
MaeI CTAG 2 cut(s) 693, 945
MaeII ACGT 2 cut(s) 579, 1027
MaeIII GTNAC 2 cut(s) 652, 1237
MflI RGATCY 3 cut(s) 178, 453, 470
MhlI GDGCHC 2 cut(s) 585, 1259
MlyI GAGTC 1 cut(s) 1063
MroI TCCGGA 1 cut(s) 1292
MseI TTAA 3 cut(s) 114, 888, 1387
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 1157
MspI CCGG 9 cut(s) 33, 351, 487, 526, 768, 814, 1010, 1050, 1293
MvnI CGCG 1 cut(s) 785
MwoI GCNNNNNNNGC 3 cut(s) 501, 580, 713
NcoI CCATGG 1 cut(s) 1349
NlaIII CATG 7 cut(s) 80, 296, 314, 978, 1035, 1220, 1353
NlaIV GGNNCC 3 cut(s) 524, 721, 1256
NmeAIII GCCGAG 1 cut(s) 564
NmuCI GTSAC 1 cut(s) 1237
NruI TCGCGA 1 cut(s) 785
PagI TCATGA 3 cut(s) 76, 310, 1216
PaqCI CACCTGC 1 cut(s) 707
PceI AGGCCT 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 1125
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 675
PfeI GAWTC 2 cut(s) 386, 1058
PinAI ACCGGT 2 cut(s) 32, 350
PkrI GCNGC 6 cut(s) 709, 1145, 1156, 1159, 1225, 1228
PleI GAGTC 1 cut(s) 1063
PpsI GAGTC 1 cut(s) 1063
PpuMI RGGWCCY 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 635
PspN4I GGNNCC 3 cut(s) 524, 721, 1256
PspPI GGNCC 4 cut(s) 484, 523, 635, 1012
PspPPI RGGWCCY 1 cut(s) 635
PstI CTGCAG 1 cut(s) 1228
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 3 cut(s) 178, 453, 470
PvuII CAGCTG 1 cut(s) 1157
RruI TCGCGA 1 cut(s) 785
RsaI GTAC 4 cut(s) 37, 355, 772, 1372
RsaNI GTAC 4 cut(s) 36, 354, 771, 1371
RseI CAYNNNNRTG 1 cut(s) 291
SapI GCTCTTC 1 cut(s) 1125
SaqAI TTAA 3 cut(s) 114, 888, 1387
SatI GCNGC 6 cut(s) 708, 1144, 1155, 1158, 1224, 1227
Sau96I GGNCC 4 cut(s) 484, 523, 635, 1012
ScaI AGTACT 1 cut(s) 1372
SchI GAGTC 1 cut(s) 1063
SduI GDGCHC 2 cut(s) 585, 1259
SfaNI GCATC 1 cut(s) 1210
SfcI CTRYAG 1 cut(s) 1224
SinI GGWCC 4 cut(s) 484, 523, 635, 1012
SmiMI CAYNNNNRTG 1 cut(s) 291
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 4 cut(s) 144, 507, 705, 708
SspMI CTAG 2 cut(s) 693, 945
StuI AGGCCT 1 cut(s) 106
StyI CCWWGG 1 cut(s) 1349
TaaI ACNGT 7 cut(s) 101, 610, 671, 859, 966, 1168, 1367
TaiI ACGT 2 cut(s) 582, 1030
TaqI TCGA 2 cut(s) 546, 908
TatI WGTACW 1 cut(s) 1370
TauI GCSGC 1 cut(s) 710
TfiI GAWTC 2 cut(s) 386, 1058
Tru1I TTAA 3 cut(s) 114, 888, 1387
Tru9I TTAA 3 cut(s) 114, 888, 1387
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 1 cut(s) 1237
TseI GCWGC 5 cut(s) 1143, 1154, 1157, 1223, 1226
Tsp45I GTSAC 1 cut(s) 1237
TspDTI ATGAA 7 cut(s) 197, 299, 327, 1019, 1020, 1166, 1178
TspRI CASTG 1 cut(s) 370
VpaK11BI GGWCC 4 cut(s) 484, 523, 635, 1012
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 1359
XspI CTAG 2 cut(s) 693, 945
ZrmI AGTACT 1 cut(s) 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.