AT3G18580

Single-stranded DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014454
Physical Location & Seq
Reverse (-)
6396747 .. 6398261
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18580.1

Sequence Viewer

Length: 654 bp
ATGGCGAATTCAATGGCTACACTTTCTAGAAGACTCTATCGATCTCTTCTATCGAACCCTAGAATTTCTCAAGCTTCCATGTCTTTCTGTACCAACAACATCACTTCCCCAGAAGACTCCGACTTTGACGAGTTAGAATCGCCCATTGAACCAAAGGCCTCAGATCCAGTTTCTCGATTTTCCGGAGAAGAACGCGTTATGGAAGAGCGTCCACTCGAAAATGGCCTTGACTCTGGCATTTTCAAGGCAATATTGGTGGGGCAAGTGGGTCAGCTTCCTCTGCAGAAGAAGCTTAAGAGTGGTAGAACTGTCACTCTCTTCTCTGTAGGAACTGGTGGGATCAGGAACAACCGGAGACCGCTTATTAACGAAGATCCGAGAGAGTATGCGAGCCGGTCTGCGGTGCAGTGGCACCGTGTCTCTGTTTACCCTGAACGCTTGGCAGATCTTGTGTTGAAGAATGTTGAACCCGGTACTGTTATCTACTTAGAGGGTAATCTGGAGACGAAGATATTCACTGATCCTGTCACTGGTTTGGTTCGACGTATAAGAGAAGTAGCAATTCGTAGAAACGGCCGAGTTGTGTTTTTGGGAAAAGCCGGTGATATGCAGCAACCGAGTTCTGCTGAGCTTAGAGGCGTTGGCTACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03430 ko03440 map03030 map03430 map03440
Pfam Domains
Protein Families
SSB

Protein Analysis

217

Amino Acids

24.21

Weight (kDa)

9.29

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSB PF00436 81 - 189 4.7e-17 Single-strand binding protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18580
fragaria_vesca FvH4_5g12820 FvH4_5g12820
malus_domestica MD06G1209800.v1.1 MD14G1220600.v1.1
prunus_persica Prupe.5G215900_v2.0.a1
pyrus_communis pycom06g18740
rosa_chinensis RchiOBHm_Chr7g0184411
rosa_laevigata RLG00000004977
rosa_multiflora Rmu_co8454851.1_g000001 Rmu_sc0001557.1_g000018
rosa_roxburghii Rroxscaffold_3G00269650
rosa_samantha Rh7AG080200 Rh7BG067000 Rh7CG067300 Rh7DG067000
rosa_wichuraiana Rw7G005510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 411
AccII CGCG 1 cut(s) 195
AccIII TCCGGA 1 cut(s) 182
AciI CCGC 2 cut(s) 359, 401
AclWI GGATC 4 cut(s) 158, 347, 368, 515
AcoI YGGCCR 1 cut(s) 574
AcsI RAATTY 2 cut(s) 7, 63
AfaI GTAC 2 cut(s) 91, 475
AfiI CCNNNNNNNGG 2 cut(s) 400, 530
AflII CTTAAG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 5 cut(s) 12, 149, 244, 457, 467
AluBI AGCT 4 cut(s) 74, 274, 292, 631
AluI AGCT 4 cut(s) 74, 274, 292, 631
Alw26I GTCTC 3 cut(s) 349, 424, 497
AlwI GGATC 4 cut(s) 158, 347, 368, 515
Aor13HI TCCGGA 1 cut(s) 182
AoxI GGCC 3 cut(s) 156, 223, 574
ApeKI GCWGC 1 cut(s) 610
ApoI RAATTY 2 cut(s) 7, 63
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
Asp700I GAANNNNTTC 1 cut(s) 512
AsuC2I CCSGG 1 cut(s) 471
AsuHPI GGTGA 1 cut(s) 614
BanI GGYRCC 1 cut(s) 411
BbsI GAAGAC 2 cut(s) 37, 120
BbvI GCAGC 1 cut(s) 622
BceAI ACGGC 1 cut(s) 589
BcnI CCSGG 1 cut(s) 471
BcoDI GTCTC 3 cut(s) 349, 424, 497
BfaI CTAG 2 cut(s) 27, 60
BfmI CTRYAG 2 cut(s) 281, 324
BfrI CTTAAG 1 cut(s) 293
BglII AGATCT 1 cut(s) 445
BisI GCNGC 1 cut(s) 611
BlpI GCTNAGC 1 cut(s) 627
BlsI GCNGC 1 cut(s) 612
Bme1390I CCNGG 1 cut(s) 471
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 1 cut(s) 471
BpiI GAAGAC 2 cut(s) 37, 120
BpmI CTGGAG 1 cut(s) 521
Bpu1102I GCTNAGC 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 471
Bsa29I ATCGAT 1 cut(s) 40
BsaI GGTCTC 1 cut(s) 349
BsaWI WCCGGW 2 cut(s) 182, 351
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 530
Bse118I RCCGGY 2 cut(s) 393, 599
Bse1I ACTGG 3 cut(s) 167, 337, 535
BseAI TCCGGA 1 cut(s) 182
BseCI ATCGAT 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 400, 530
BseMII CTCAG 2 cut(s) 174, 618
BseNI ACTGG 3 cut(s) 167, 337, 535
BseX3I CGGCCG 1 cut(s) 574
BseXI GCAGC 1 cut(s) 622
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 3 cut(s) 158, 225, 576
BshNI GGYRCC 1 cut(s) 411
BshVI ATCGAT 1 cut(s) 40
BsiEI CGRYCG 1 cut(s) 577
BsiSI CCGG 5 cut(s) 183, 352, 394, 471, 600
BslI CCNNNNNNNGG 2 cut(s) 400, 530
BsmAI GTCTC 3 cut(s) 349, 424, 497
BsmBI CGTCTC 1 cut(s) 497
BsnI GGCC 3 cut(s) 158, 225, 576
Bso31I GGTCTC 1 cut(s) 349
Bsp13I TCCGGA 1 cut(s) 182
Bsp143I GATC 6 cut(s) 41, 163, 339, 373, 445, 520
Bsp1720I GCTNAGC 1 cut(s) 627
BspACI CCGC 2 cut(s) 359, 401
BspANI GGCC 3 cut(s) 158, 225, 576
BspCNI CTCAG 2 cut(s) 173, 619
BspDI ATCGAT 1 cut(s) 40
BspEI TCCGGA 1 cut(s) 182
BspFNI CGCG 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 413
BspMAI CTGCAG 1 cut(s) 285
BspPI GGATC 4 cut(s) 158, 347, 368, 515
BspQI GCTCTTC 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 411
BspTI CTTAAG 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 349
BsrFI RCCGGY 2 cut(s) 393, 599
BsrI ACTGG 3 cut(s) 167, 337, 535
BssAI RCCGGY 2 cut(s) 393, 599
BssMI GATC 6 cut(s) 41, 163, 339, 373, 445, 520
Bst4CI ACNGT 3 cut(s) 310, 416, 478
Bst6I CTCTTC 3 cut(s) 51, 198, 323
BstAFI CTTAAG 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 4 cut(s) 160, 487, 627, 632
BstFNI CGCG 1 cut(s) 195
BstKTI GATC 6 cut(s) 44, 166, 342, 376, 448, 523
BstMAI GTCTC 3 cut(s) 349, 424, 497
BstMBI GATC 6 cut(s) 41, 163, 339, 373, 445, 520
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 2 cut(s) 280, 289
BstSCI CCNGG 1 cut(s) 469
BstSFI CTRYAG 2 cut(s) 281, 324
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 622
BstV2I GAAGAC 2 cut(s) 37, 120
BstX2I RGATCY 3 cut(s) 163, 373, 445
BstYI RGATCY 3 cut(s) 163, 373, 445
BstZI CGGCCG 1 cut(s) 574
Bsu15I ATCGAT 1 cut(s) 40
BsuRI GGCC 3 cut(s) 158, 225, 576
BsuTUI ATCGAT 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 413
BtsIMutI CAGTG 3 cut(s) 413, 516, 528
Cac8I GCNNGC 1 cut(s) 391
Cfr10I RCCGGY 2 cut(s) 393, 599
ClaI ATCGAT 1 cut(s) 40
CseI GACGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 90, 474
CspCI CAANNNNNGTGG 2 cut(s) 237, 272
CviAII CATG 1 cut(s) 79
CviQI GTAC 2 cut(s) 90, 474
DdeI CTNAG 4 cut(s) 160, 487, 627, 632
DpnI GATC 6 cut(s) 43, 165, 341, 375, 447, 522
DpnII GATC 6 cut(s) 41, 163, 339, 373, 445, 520
EaeI YGGCCR 1 cut(s) 574
EagI CGGCCG 1 cut(s) 574
Eam1104I CTCTTC 3 cut(s) 51, 198, 323
EarI CTCTTC 3 cut(s) 51, 198, 323
EclXI CGGCCG 1 cut(s) 574
Eco147I AGGCCT 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 349
Eco52I CGGCCG 1 cut(s) 574
EcoRI GAATTC 1 cut(s) 7
Esp3I CGTCTC 1 cut(s) 497
FaeI CATG 1 cut(s) 82
FaiI YATR 5 cut(s) 80, 200, 387, 548, 608
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 611
Fsp4HI GCNGC 1 cut(s) 611
FspBI CTAG 2 cut(s) 27, 60
GluI GCNGC 1 cut(s) 611
GsuI CTGGAG 1 cut(s) 521
HaeIII GGCC 3 cut(s) 158, 225, 576
HapII CCGG 5 cut(s) 183, 352, 394, 471, 600
HgaI GACGC 1 cut(s) 197
Hin1II CATG 1 cut(s) 82
HindIII AAGCTT 2 cut(s) 72, 290
HinfI GANTC 4 cut(s) 33, 116, 137, 230
HpaII CCGG 5 cut(s) 183, 352, 394, 471, 600
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 2 cut(s) 212, 427
Hpy188I TCNGA 3 cut(s) 121, 163, 378
Hpy188III TCNNGA 5 cut(s) 27, 174, 183, 343, 500
Hpy8I GTNNAC 2 cut(s) 212, 427
Hpy99I CGWCG 1 cut(s) 546
HpyCH4III ACNGT 3 cut(s) 310, 416, 478
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 3 cut(s) 283, 406, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 289
HpyF3I CTNAG 4 cut(s) 160, 487, 627, 632
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 1 cut(s) 82
Kpn2I TCCGGA 1 cut(s) 182
Kzo9I GATC 6 cut(s) 41, 163, 339, 373, 445, 520
LguI GCTCTTC 1 cut(s) 198
Lsp1109I GCAGC 1 cut(s) 622
MaeI CTAG 2 cut(s) 27, 60
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 2 cut(s) 310, 526
MalI GATC 6 cut(s) 43, 165, 341, 375, 447, 522
MboI GATC 6 cut(s) 41, 163, 339, 373, 445, 520
MflI RGATCY 3 cut(s) 163, 373, 445
MluCI AATT 3 cut(s) 7, 63, 561
MluI ACGCGT 1 cut(s) 193
MlyI GAGTC 3 cut(s) 27, 110, 224
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 4 cut(s) 169, 288, 484, 629
MroI TCCGGA 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 512
MseI TTAA 2 cut(s) 294, 366
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 5 cut(s) 183, 352, 394, 471, 600
MspR9I CCNGG 1 cut(s) 471
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 280, 289
NciI CCSGG 1 cut(s) 471
NdeII GATC 6 cut(s) 41, 163, 339, 373, 445, 520
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 413
NmeAIII GCCGAG 1 cut(s) 602
NmuCI GTSAC 2 cut(s) 310, 526
PceI AGGCCT 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 1 cut(s) 612
PleI GAGTC 3 cut(s) 27, 110, 224
PpsI GAGTC 3 cut(s) 27, 110, 224
PspN4I GGNNCC 1 cut(s) 413
PstI CTGCAG 1 cut(s) 285
PsuI RGATCY 3 cut(s) 163, 373, 445
RsaI GTAC 2 cut(s) 91, 475
RsaNI GTAC 2 cut(s) 90, 474
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 294, 366
SatI GCNGC 1 cut(s) 611
Sau3AI GATC 6 cut(s) 41, 163, 339, 373, 445, 520
SchI GAGTC 3 cut(s) 27, 110, 224
ScrFI CCNGG 1 cut(s) 471
SetI ASST 5 cut(s) 76, 276, 294, 547, 633
SfcI CTRYAG 2 cut(s) 281, 324
SmlI CTYRAG 2 cut(s) 69, 293
SmoI CTYRAG 2 cut(s) 69, 293
Sse9I AATT 3 cut(s) 7, 63, 561
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 2 cut(s) 359, 401
SspI AATATT 1 cut(s) 252
SspMI CTAG 2 cut(s) 27, 60
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 469
TaaI ACNGT 3 cut(s) 310, 416, 478
TaiI ACGT 1 cut(s) 547
TaqI TCGA 5 cut(s) 40, 53, 175, 216, 541
TasI AATT 3 cut(s) 7, 63, 561
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 2 cut(s) 294, 366
Tru9I TTAA 2 cut(s) 294, 366
TscAI CASTG 3 cut(s) 413, 523, 535
TseFI GTSAC 2 cut(s) 310, 526
TseI GCWGC 1 cut(s) 610
Tsp45I GTSAC 2 cut(s) 310, 526
TspRI CASTG 3 cut(s) 413, 523, 535
Vha464I CTTAAG 1 cut(s) 293
XapI RAATTY 2 cut(s) 7, 63
XbaI TCTAGA 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 2 cut(s) 27, 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.