Rh7BG067000

Single-stranded DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014454
Physical Location & Seq
Reverse (-)
4434647 .. 4436389
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG067000.1

Sequence Viewer

Length: 768 bp
ATGGGCTCGGGTCAAAATTTCAGACCCCAAATGGGTTTTCTCACCACCACCAAGGGTTTAAGCTCCCCAAAACCTCTTGTGCTAGAGCTCCATTTTTGCTGCCTGAAAATGTCAGCCTCCTCCTCCATGGCTTCTCTCTCAAGGAGACTACTCCTCTCTCGCTCTCTCTACCACTCAAACCCCAGCACCGTGCTCTCCACTCGCTTCTGCACCACCACCACCCACGTCACCTCCGACTCAGACGAGCCCATCACCTCGGACCTAGAGTCCGACCCGACCCCATCACAGCCTTCCGCCCCCAACCCGGTCCGCGGTATCTACGATCAGCCGCTCGAGAACGGAGTCGACGTTGGCATTTATAAGGCGATACTGGTGGGGCAGGTGGGGCAGAGTCCGTTGCAGAAGAGACTGAAGAGTGGGGCGCAGGTGACCATGTTCTCAATTGGGACCGGCGGCATTCGAAACAACCGGAGGCCCTTTGAGACCGAGAACCCGACGGAGTATGCCAACCGCTGTGTGGTTCAGTGGCACAGGGTTTGTGTTTATCCGGAGAGGCTCGGCAAGATTGCGGTGCAGAATGCTTTGCCTGGTTCAATTTTATACTTGGAAGGTAATCTGGAGACCAAAATCTTCACTGACCCAACAACTGGGCTTATTCGACGAGTTAGAGAGATTGCTATTCGCAGAAATGGTCGCCTTGTGTTTTTGGGTAAAGGAAATGATGCTGAGCCAACAGTAACGGGGCTCAGAGGTGTTGGCTACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03430 ko03440 map03030 map03430 map03440
Pfam Domains
Protein Families
SSB

Protein Analysis

255

Amino Acids

27.96

Weight (kDa)

9.53

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSB PF00436 121 - 228 2.8e-13 Single-strand binding protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18580
fragaria_vesca FvH4_5g12820 FvH4_5g12820
malus_domestica MD06G1209800.v1.1 MD14G1220600.v1.1
prunus_persica Prupe.5G215900_v2.0.a1
pyrus_communis pycom06g18740
rosa_chinensis RchiOBHm_Chr7g0184411
rosa_laevigata RLG00000004977
rosa_multiflora Rmu_co8454851.1_g000001 Rmu_sc0001557.1_g000018
rosa_roxburghii Rroxscaffold_3G00269650
rosa_samantha Rh7AG080200 Rh7BG067000 Rh7CG067300 Rh7DG067000
rosa_wichuraiana Rw7G005510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AarI CACCTGC 2 cut(s) 370, 415
Acc36I ACCTGC 2 cut(s) 370, 415
AccB7I CCANNNNNTGG 1 cut(s) 647
AccBSI CCGCTC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 345
AccII CGCG 1 cut(s) 312
AccIII TCCGGA 1 cut(s) 547
AciI CCGC 7 cut(s) 294, 310, 312, 329, 453, 511, 569
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 431
AfiI CCNNNNNNNGG 5 cut(s) 32, 304, 311, 517, 647
AgsI TTSAA 1 cut(s) 594
AhdI GACNNNNNGTC 1 cut(s) 265
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 586
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 2 cut(s) 63, 88
AluI AGCT 2 cut(s) 63, 88
Alw21I GWGCWC 2 cut(s) 90, 195
Alw26I GTCTC 4 cut(s) 139, 400, 476, 614
Ama87I CYCGRG 2 cut(s) 7, 332
Aor13HI TCCGGA 1 cut(s) 547
AoxI GGCC 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 16
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 4 cut(s) 259, 307, 447, 474
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 4 cut(s) 34, 220, 244, 439
AsuII TTCGAA 1 cut(s) 460
AvaI CYCGRG 2 cut(s) 7, 332
AvaII GGWCC 3 cut(s) 259, 307, 447
BanII GRGCYC 4 cut(s) 8, 90, 249, 747
Bbv12I GWGCWC 2 cut(s) 90, 195
BbvI GCAGC 1 cut(s) 86
BccI CCATC 2 cut(s) 257, 289
BciT130I CCWGG 1 cut(s) 588
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 4 cut(s) 139, 400, 476, 614
BfaI CTAG 2 cut(s) 83, 263
BfuAI ACCTGC 2 cut(s) 370, 415
BisI GCNGC 3 cut(s) 100, 329, 454
BlpI GCTNAGC 1 cut(s) 726
BlsI GCNGC 3 cut(s) 101, 330, 455
Bme1390I CCNGG 2 cut(s) 305, 588
Bme18I GGWCC 3 cut(s) 259, 307, 447
BmeRI GACNNNNNGTC 1 cut(s) 265
BmeT110I CYCGRG 2 cut(s) 7, 332
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 4 cut(s) 259, 307, 447, 474
BmiI GGNNCC 1 cut(s) 448
BmrFI CCNGG 2 cut(s) 305, 588
BmrI ACTGGG 1 cut(s) 657
BmsI GCATC 1 cut(s) 712
BmuI ACTGGG 1 cut(s) 657
BpmI CTGGAG 1 cut(s) 638
Bpu1102I GCTNAGC 1 cut(s) 726
Bpu14I TTCGAA 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 305
BsaI GGTCTC 2 cut(s) 476, 614
BsaJI CCNNGG 4 cut(s) 51, 126, 255, 310
BsaWI WCCGGW 2 cut(s) 468, 547
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 333, 363
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 304, 311, 517, 647
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 2 cut(s) 375, 652
BseAI TCCGGA 1 cut(s) 547
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 4 cut(s) 51, 126, 255, 310
BseLI CCNNNNNNNGG 5 cut(s) 32, 304, 311, 517, 647
BseMII CTCAG 3 cut(s) 252, 717, 760
BseNI ACTGG 2 cut(s) 375, 652
BseRI GAGGAG 3 cut(s) 109, 112, 143
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 182
BsgI GTGCAG 2 cut(s) 193, 593
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 1 cut(s) 475
BsiHKAI GWGCWC 2 cut(s) 90, 195
BsiHKCI CYCGRG 2 cut(s) 7, 332
BsiSI CCGG 4 cut(s) 305, 450, 469, 548
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 5 cut(s) 32, 304, 311, 517, 647
BsmAI GTCTC 4 cut(s) 139, 400, 476, 614
BsmFI GGGAC 1 cut(s) 460
BsmI GAATGC 2 cut(s) 456, 583
BsnI GGCC 1 cut(s) 475
Bso31I GGTCTC 2 cut(s) 476, 614
BsoBI CYCGRG 2 cut(s) 7, 332
Bsp119I TTCGAA 1 cut(s) 460
Bsp1286I GDGCHC 5 cut(s) 8, 90, 195, 249, 747
Bsp13I TCCGGA 1 cut(s) 547
Bsp143I GATC 1 cut(s) 322
Bsp1720I GCTNAGC 1 cut(s) 726
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 7 cut(s) 294, 310, 312, 329, 453, 511, 569
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 3 cut(s) 251, 718, 759
BspEI TCCGGA 1 cut(s) 547
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 448
BspMI ACCTGC 2 cut(s) 370, 415
BspT104I TTCGAA 1 cut(s) 460
BspTNI GGTCTC 2 cut(s) 476, 614
BsrBI CCGCTC 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 449
BsrI ACTGG 2 cut(s) 375, 652
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 4 cut(s) 51, 126, 255, 310
BssMI GATC 1 cut(s) 322
BssT1I CCWWGG 2 cut(s) 51, 126
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 2 cut(s) 190, 736
Bst6I CTCTTC 2 cut(s) 398, 407
BstBI TTCGAA 1 cut(s) 460
BstDEI CTNAG 3 cut(s) 238, 726, 746
BstDSI CCRYGG 2 cut(s) 126, 310
BstEII GGTNACC 1 cut(s) 427
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 4 cut(s) 139, 400, 476, 614
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 1 cut(s) 588
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 303, 586
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 475
BtgI CCRYGG 2 cut(s) 126, 310
BtrI CACGTC 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 530, 633
BveI ACCTGC 2 cut(s) 370, 415
CfoI GCGC 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 4 cut(s) 259, 307, 447, 474
Cfr42I CCGCGG 1 cut(s) 313
CpoI CGGWCCG 1 cut(s) 307
CspI CGGWCCG 1 cut(s) 307
CviAII CATG 2 cut(s) 127, 433
DdeI CTNAG 3 cut(s) 238, 726, 746
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
DriI GACNNNNNGTC 1 cut(s) 265
Eam1104I CTCTTC 2 cut(s) 398, 407
Eam1105I GACNNNNNGTC 1 cut(s) 265
EarI CTCTTC 2 cut(s) 398, 407
EciI GGCGGA 1 cut(s) 283
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 2 cut(s) 51, 126
Eco24I GRGCYC 4 cut(s) 8, 90, 249, 747
Eco31I GGTCTC 2 cut(s) 476, 614
Eco47I GGWCC 3 cut(s) 259, 307, 447
Eco53kI GAGCTC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 431
Eco88I CYCGRG 2 cut(s) 7, 332
Eco91I GGTNACC 1 cut(s) 427
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 474
EcoO65I GGTNACC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 586
EcoT14I CCWWGG 2 cut(s) 51, 126
EcoT38I GRGCYC 4 cut(s) 8, 90, 249, 747
ErhI CCWWGG 2 cut(s) 51, 126
FaeI CATG 2 cut(s) 130, 436
FaiI YATR 5 cut(s) 128, 360, 434, 504, 601
FaqI GGGAC 1 cut(s) 460
FatI CATG 2 cut(s) 126, 432
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 100, 329, 454
FriOI GRGCYC 4 cut(s) 8, 90, 249, 747
Fsp4HI GCNGC 3 cut(s) 100, 329, 454
FspBI CTAG 2 cut(s) 83, 263
GlaI GCGC 1 cut(s) 423
GluI GCNGC 3 cut(s) 100, 329, 454
GsaI CCCAGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 638
HaeIII GGCC 1 cut(s) 475
HapII CCGG 4 cut(s) 305, 450, 469, 548
HhaI GCGC 1 cut(s) 424
Hin1II CATG 2 cut(s) 130, 436
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 4 cut(s) 236, 266, 342, 391
HpaII CCGG 4 cut(s) 305, 450, 469, 548
HphI GGTGA 4 cut(s) 34, 220, 244, 439
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 7 cut(s) 23, 235, 241, 259, 271, 749, 767
Hpy188III TCNNGA 3 cut(s) 334, 548, 617
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 3 cut(s) 350, 499, 663
HpyAV CCTTC 2 cut(s) 300, 602
HpyCH4III ACNGT 2 cut(s) 190, 736
HpyCH4IV ACGT 2 cut(s) 225, 348
HpyCH4V TGCA 3 cut(s) 210, 400, 574
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 3 cut(s) 238, 726, 746
HpySE526I ACGT 2 cut(s) 225, 348
Hsp92II CATG 2 cut(s) 130, 436
HspAI GCGC 1 cut(s) 422
Kpn2I TCCGGA 1 cut(s) 547
KspI CCGCGG 1 cut(s) 313
Kzo9I GATC 1 cut(s) 322
LmnI GCTCC 2 cut(s) 68, 93
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 712
MaeI CTAG 2 cut(s) 83, 263
MaeII ACGT 2 cut(s) 225, 348
MaeIII GTNAC 3 cut(s) 226, 427, 736
MalI GATC 1 cut(s) 324
MbiI CCGCTC 1 cut(s) 331
MboI GATC 1 cut(s) 322
MboII GAAGA 3 cut(s) 415, 424, 622
MfeI CAATTG 1 cut(s) 441
MhlI GDGCHC 5 cut(s) 8, 90, 195, 249, 747
MluCI AATT 3 cut(s) 16, 441, 594
MlyI GAGTC 4 cut(s) 230, 275, 351, 400
MmeI TCCRAC 2 cut(s) 258, 294
MroI TCCGGA 1 cut(s) 547
MseI TTAA 1 cut(s) 59
MspA1I CMGCKG 2 cut(s) 312, 513
MspI CCGG 4 cut(s) 305, 450, 469, 548
MspR9I CCNGG 2 cut(s) 305, 588
MunI CAATTG 1 cut(s) 441
Mva1269I GAATGC 2 cut(s) 456, 583
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 385
NciI CCSGG 1 cut(s) 305
NcoI CCATGG 1 cut(s) 126
NdeII GATC 1 cut(s) 322
NlaIII CATG 2 cut(s) 130, 436
NlaIV GGNNCC 1 cut(s) 448
NmeAIII GCCGAG 1 cut(s) 537
NmuCI GTSAC 2 cut(s) 226, 427
NspV TTCGAA 1 cut(s) 460
PaeR7I CTCGAG 1 cut(s) 332
PaqCI CACCTGC 2 cut(s) 370, 415
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 345
PctI GAATGC 2 cut(s) 456, 583
PflMI CCANNNNNTGG 1 cut(s) 647
PkrI GCNGC 3 cut(s) 101, 330, 455
PleI GAGTC 4 cut(s) 230, 274, 350, 399
PpsI GAGTC 4 cut(s) 230, 274, 350, 399
PsiI TTATAA 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 586
PspEI GGTNACC 1 cut(s) 427
PspFI CCCAGC 1 cut(s) 182
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 1 cut(s) 448
PspPI GGNCC 4 cut(s) 259, 307, 447, 474
Rsr2I CGGWCCG 1 cut(s) 307
RsrII CGGWCCG 1 cut(s) 307
SacI GAGCTC 1 cut(s) 90
SacII CCGCGG 1 cut(s) 313
SalI GTCGAC 1 cut(s) 344
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 3 cut(s) 100, 329, 454
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 4 cut(s) 259, 307, 447, 474
SchI GAGTC 4 cut(s) 230, 275, 351, 400
ScrFI CCNGG 2 cut(s) 305, 588
SduI GDGCHC 5 cut(s) 8, 90, 195, 249, 747
SfaNI GCATC 1 cut(s) 712
Sfr274I CTCGAG 1 cut(s) 332
Sfr303I CCGCGG 1 cut(s) 313
SfuI TTCGAA 1 cut(s) 460
SgrBI CCGCGG 1 cut(s) 313
SinI GGWCC 3 cut(s) 259, 307, 447
SlaI CTCGAG 1 cut(s) 332
SmlI CTYRAG 2 cut(s) 139, 332
SmoI CTYRAG 2 cut(s) 139, 332
Sse9I AATT 3 cut(s) 16, 441, 594
SsiI CCGC 7 cut(s) 294, 310, 312, 329, 453, 511, 569
SspMI CTAG 2 cut(s) 83, 263
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 303, 586
StyI CCWWGG 2 cut(s) 51, 126
TaaI ACNGT 2 cut(s) 190, 736
TaiI ACGT 2 cut(s) 228, 351
TaqI TCGA 4 cut(s) 333, 345, 460, 658
TaqII GACCGA 1 cut(s) 500
TasI AATT 3 cut(s) 16, 441, 594
TauI GCSGC 2 cut(s) 331, 456
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 2 cut(s) 530, 640
TseFI GTSAC 2 cut(s) 226, 427
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 2 cut(s) 226, 427
TspGWI ACGGA 3 cut(s) 354, 384, 512
TspRI CASTG 2 cut(s) 530, 640
Van91I CCANNNNNTGG 1 cut(s) 647
VpaK11BI GGWCC 3 cut(s) 259, 307, 447
XapI RAATTY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XhoI CTCGAG 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 2 cut(s) 83, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.