AT3G18680

Aspartate glutamate uridylate kinase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014351
Physical Location & Seq
Forward (+)
6427403 .. 6429692
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18680.2

Sequence Viewer

Length: 1020 bp
ATGGCAATTCCGTTGCCTCTTACCTCTTGCTCCCCAATCTCAACTTCTTCGTCTATTTCCCGAACCTCCTTCGTCCCTCTTACACTTCGCAATCGTACTTTCTTCTCCAACCAGAATTACAGTAGGCGTGTACTTATCAGCTGCTCTTCTTCTTTGTCCTCAGACAATGGTTCATCTCCAGACTCCATGAACGGAAACGGGAACGGGAACGGGAGTAGCTTAAACGGGCAATCATCTTTCCCACGACTGCCTTCCTTTGATGGAACATCCAAACCACCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGAGAAGCTCTTGCTGGAGACGAGGAGCAAAATATCGACCCAAAGGTTACTATGGCGATTGCAAGGGAAGTTGCAGCAGTGACTCGACTTGGCATTGAGGTTGCTATAGTTGTTGGAGGAGGAAATATCTTTCGTGGATCTACCTGGGCTGGGTGCAGTGGCCTTGATCGCTCCTCTGCTGATTATATCGGGATGCTGGCAACTGTGATGAATGCAATATTTCTTCAAGCGACAATGGAGAGTATTGGCATCCCAACCCGTGTTCAAACTGCTTTCCGCATGTCGGAAGTCGCAGAGCCTTACATAAGAAGACGAGCAATCAGACATCTAGAAAAAGGAAGGGTTGTAATATTTGCAGCTGGAACAGGCAATCCATTTTTCACCACCGATACTGCAGCGGCTCTTCGATGTGCTGAAATTAATGCAGAAGTAGTGCTGAAAGCAACAAATGTTGATGGCGTGTTCGACGATGATCCTAAAAGAAACCCAAACGCTCGTCTGCTTGACTCACTAACTTACCAAGAGGTCACCTCAAAGGACCTCTCTGTAATGGATATGACTGCTATCACTTTGTGCCAAGAAAATAACATCCCAGTTGTGGTATTCAATCTTTCGGAACCTGGGAACATCGCCAAAGCAATCAAAGGAGAGAGAGTTGGTACATTGATAGGAGGAACTTGGAACTCCATTGTTACAACAACCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
AA_kinase

Protein Analysis

339

Amino Acids

36.26

Weight (kDa)

8.62

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_kinase PF00696 98 - 302 1.6e-35 Amino acid kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18680 AT3G18680
fragaria_vesca FvH4_1g24030
malus_domestica MD01G1011700.v1.1 MD15G1338200.v1.1
prunus_persica Prupe.6G157900_v2.0.a1 Prupe.6G157900_v2.0.a1
pyrus_communis pycom15g28830
rosa_chinensis RchiOBHm_Chr2g0120171
rosa_laevigata RLG00000018528
rosa_multiflora Rmu_sc0015469.1_g000003
rosa_roxburghii Rroxscaffold_2G00123650
rosa_rugosa Rorug02G0227300 Rorug02G0227400
rosa_samantha Rh2AG284000 Rh2DG309000
rosa_wichuraiana Rw2G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 278, 589, 710
AclWI GGATC 2 cut(s) 457, 779
AdeI CACNNNGTG 1 cut(s) 885
AfaI GTAC 3 cut(s) 97, 132, 973
AfiI CCNNNNNNNGG 3 cut(s) 462, 595, 910
AgsI TTSAA 3 cut(s) 539, 578, 919
AjnI CCWGG 2 cut(s) 455, 931
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AloI GAACNNNNNNTCC 2 cut(s) 667, 699
AluBI AGCT 4 cut(s) 141, 219, 320, 671
AluI AGCT 4 cut(s) 141, 219, 320, 671
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 2 cut(s) 457, 779
AoxI GGCC 1 cut(s) 472
ApeKI GCWGC 4 cut(s) 141, 386, 668, 707
AseI ATTAAT 1 cut(s) 732
AspS9I GGNCC 1 cut(s) 850
AsuHPI GGTGA 2 cut(s) 685, 832
AvaII GGWCC 1 cut(s) 850
BbsI GAAGAC 1 cut(s) 628
BbvI GCAGC 4 cut(s) 128, 398, 680, 719
BccI CCATC 2 cut(s) 254, 761
BciT130I CCWGG 2 cut(s) 457, 933
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 1 cut(s) 641
BfmI CTRYAG 2 cut(s) 417, 705
BisI GCNGC 5 cut(s) 142, 387, 669, 708, 711
BlsI GCNGC 5 cut(s) 143, 388, 670, 709, 712
Bme1390I CCNGG 2 cut(s) 457, 933
Bme18I GGWCC 1 cut(s) 850
BmgT120I GGNCC 1 cut(s) 850
BmiI GGNNCC 1 cut(s) 930
BmrFI CCNGG 2 cut(s) 457, 933
BmrI ACTGGG 1 cut(s) 899
BmsI GCATC 2 cut(s) 495, 570
BmuI ACTGGG 1 cut(s) 899
BpiI GAAGAC 1 cut(s) 628
BplI GAGNNNNNCTC 2 cut(s) 827, 859
BpmI CTGGAG 2 cut(s) 162, 348
BsaJI CCNNGG 2 cut(s) 456, 932
BsaXI ACNNNNNCTCC 2 cut(s) 951, 981
Bsc4I CCNNNNNNNGG 3 cut(s) 462, 595, 910
Bse1I ACTGG 1 cut(s) 905
BseBI CCWGG 2 cut(s) 457, 933
BseDI CCNNGG 2 cut(s) 456, 932
BseGI GGATG 4 cut(s) 266, 510, 561, 900
BseLI CCNNNNNNNGG 3 cut(s) 462, 595, 910
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 905
BseRI GAGGAG 3 cut(s) 350, 444, 475
BseXI GCAGC 4 cut(s) 128, 398, 680, 719
BseYI CCCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 487
BshFI GGCC 1 cut(s) 474
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 3 cut(s) 462, 595, 910
BsmAI GTCTC 1 cut(s) 324
BsmBI CGTCTC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 1 cut(s) 474
Bsp143I GATC 3 cut(s) 449, 478, 784
BspACI CCGC 3 cut(s) 278, 589, 710
BspANI GGCC 1 cut(s) 474
BspCNI CTCAG 1 cut(s) 173
BspHI TCATGA 1 cut(s) 1016
BspLI GGNNCC 1 cut(s) 930
BspMAI CTGCAG 1 cut(s) 709
BspPI GGATC 2 cut(s) 457, 779
BspQI GCTCTTC 2 cut(s) 151, 720
BsrI ACTGG 1 cut(s) 905
BssECI CCNNGG 2 cut(s) 456, 932
BssMI GATC 3 cut(s) 449, 478, 784
Bst2UI CCWGG 2 cut(s) 457, 933
Bst4CI ACNGT 2 cut(s) 122, 517
Bst6I CTCTTC 2 cut(s) 151, 720
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 1 cut(s) 160
BstEII GGTNACC 1 cut(s) 838
BstF5I GGATG 4 cut(s) 266, 510, 561, 900
BstKTI GATC 3 cut(s) 452, 481, 787
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 3 cut(s) 449, 478, 784
BstMWI GCNNNNNNNGC 1 cut(s) 480
BstNI CCWGG 2 cut(s) 457, 933
BstNSI RCATGY 1 cut(s) 595
BstPI GGTNACC 1 cut(s) 838
BstSCI CCNGG 2 cut(s) 455, 931
BstSFI CTRYAG 2 cut(s) 417, 705
BstV1I GCAGC 4 cut(s) 128, 398, 680, 719
BstV2I GAAGAC 1 cut(s) 628
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuRI GGCC 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 925
BtsCI GGATG 4 cut(s) 266, 510, 561, 900
BtsI GCAGTG 2 cut(s) 396, 475
BtsIMutI CAGTG 3 cut(s) 316, 396, 475
Cac8I GCNNGC 1 cut(s) 510
CciI TCATGA 1 cut(s) 1016
Cfr13I GGNCC 1 cut(s) 850
Csp6I GTAC 3 cut(s) 96, 131, 972
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 3 cut(s) 187, 592, 1017
CviJI RGCY 8 cut(s) 141, 219, 320, 461, 474, 610, 671, 713
CviKI_1 RGCY 8 cut(s) 141, 219, 320, 461, 474, 610, 671, 713
CviQI GTAC 3 cut(s) 96, 131, 972
DdeI CTNAG 1 cut(s) 160
DpnI GATC 3 cut(s) 451, 480, 786
DpnII GATC 3 cut(s) 449, 478, 784
DraIII CACNNNGTG 1 cut(s) 885
Eam1104I CTCTTC 2 cut(s) 151, 720
EarI CTCTTC 2 cut(s) 151, 720
Eco47I GGWCC 1 cut(s) 850
Eco91I GGTNACC 1 cut(s) 838
EcoO109I RGGNCCY 1 cut(s) 850
EcoO65I GGTNACC 1 cut(s) 838
EcoRII CCWGG 2 cut(s) 455, 931
Esp3I CGTCTC 1 cut(s) 324
FaeI CATG 3 cut(s) 190, 595, 1020
FaiI YATR 8 cut(s) 188, 365, 419, 498, 593, 617, 869, 1018
FaqI GGGAC 1 cut(s) 59
FatI CATG 3 cut(s) 186, 591, 1016
Fnu4HI GCNGC 5 cut(s) 142, 387, 669, 708, 711
FokI GGATG 4 cut(s) 253, 517, 548, 887
Fsp4HI GCNGC 5 cut(s) 142, 387, 669, 708, 711
FspBI CTAG 1 cut(s) 641
GluI GCNGC 5 cut(s) 142, 387, 669, 708, 711
GsaI CCCAGC 1 cut(s) 465
GsuI CTGGAG 2 cut(s) 162, 348
HaeIII GGCC 1 cut(s) 474
Hin1II CATG 3 cut(s) 190, 595, 1020
HinfI GANTC 3 cut(s) 182, 394, 818
HphI GGTGA 2 cut(s) 685, 832
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 4 cut(s) 163, 598, 635, 928
Hpy188III TCNNGA 5 cut(s) 60, 179, 502, 641, 1017
Hpy8I GTNNAC 1 cut(s) 131
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 4 cut(s) 79, 261, 285, 645
HpyCH4III ACNGT 2 cut(s) 122, 517
HpyCH4V TGCA 7 cut(s) 374, 386, 468, 527, 668, 707, 737
HpyF10VI GCNNNNNNNGC 1 cut(s) 480
HpyF3I CTNAG 1 cut(s) 160
Hsp92II CATG 3 cut(s) 190, 595, 1020
Kzo9I GATC 3 cut(s) 449, 478, 784
LguI GCTCTTC 2 cut(s) 151, 720
LmnI GCTCC 3 cut(s) 35, 337, 488
Lsp1109I GCAGC 4 cut(s) 128, 398, 680, 719
LweI GCATC 2 cut(s) 495, 570
MaeI CTAG 1 cut(s) 641
MaeIII GTNAC 4 cut(s) 358, 391, 838, 1003
MalI GATC 3 cut(s) 451, 480, 786
MboI GATC 3 cut(s) 449, 478, 784
MboII GAAGA 7 cut(s) 39, 94, 138, 141, 527, 633, 707
MflI RGATCY 1 cut(s) 449
MluCI AATT 3 cut(s) 6, 115, 729
MlyI GAGTC 3 cut(s) 176, 388, 812
MmeI TCCRAC 3 cut(s) 132, 406, 576
MseI TTAA 3 cut(s) 221, 282, 732
MspA1I CMGCKG 3 cut(s) 141, 671, 710
MspR9I CCNGG 2 cut(s) 457, 933
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 2 cut(s) 457, 933
MwoI GCNNNNNNNGC 1 cut(s) 480
NdeII GATC 3 cut(s) 449, 478, 784
NlaIII CATG 3 cut(s) 190, 595, 1020
NlaIV GGNNCC 1 cut(s) 930
NmuCI GTSAC 2 cut(s) 391, 838
NspI RCATGY 1 cut(s) 595
PagI TCATGA 1 cut(s) 1016
PciSI GCTCTTC 2 cut(s) 151, 720
PctI GAATGC 1 cut(s) 529
PkrI GCNGC 5 cut(s) 143, 388, 670, 709, 712
PleI GAGTC 3 cut(s) 176, 388, 812
PpsI GAGTC 3 cut(s) 176, 388, 812
PpuMI RGGWCCY 1 cut(s) 850
PshBI ATTAAT 1 cut(s) 732
Psp5II RGGWCCY 1 cut(s) 850
Psp6I CCWGG 2 cut(s) 455, 931
PspEI GGTNACC 1 cut(s) 838
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 2 cut(s) 455, 931
PspN4I GGNNCC 1 cut(s) 930
PspPI GGNCC 1 cut(s) 850
PspPPI RGGWCCY 1 cut(s) 850
PstI CTGCAG 1 cut(s) 709
PsuI RGATCY 1 cut(s) 449
PvuII CAGCTG 2 cut(s) 141, 671
RsaI GTAC 3 cut(s) 97, 132, 973
RsaNI GTAC 3 cut(s) 96, 131, 972
SapI GCTCTTC 2 cut(s) 151, 720
SaqAI TTAA 3 cut(s) 221, 282, 732
SatI GCNGC 5 cut(s) 142, 387, 669, 708, 711
Sau3AI GATC 3 cut(s) 449, 478, 784
Sau96I GGNCC 1 cut(s) 850
SchI GAGTC 3 cut(s) 176, 388, 812
ScrFI CCNGG 2 cut(s) 457, 933
SfaNI GCATC 2 cut(s) 495, 570
SfcI CTRYAG 2 cut(s) 417, 705
SinI GGWCC 1 cut(s) 850
Sse9I AATT 3 cut(s) 6, 115, 729
SsiI CCGC 3 cut(s) 278, 589, 710
SspI AATATT 2 cut(s) 531, 663
SspMI CTAG 1 cut(s) 641
StyD4I CCNGG 2 cut(s) 455, 931
TaaI ACNGT 2 cut(s) 122, 517
TaqI TCGA 4 cut(s) 348, 397, 718, 777
TasI AATT 3 cut(s) 6, 115, 729
TatI WGTACW 1 cut(s) 130
TauI GCSGC 1 cut(s) 713
Tru1I TTAA 3 cut(s) 221, 282, 732
Tru9I TTAA 3 cut(s) 221, 282, 732
TscAI CASTG 3 cut(s) 316, 396, 475
TseFI GTSAC 2 cut(s) 391, 838
TseI GCWGC 4 cut(s) 141, 386, 668, 707
Tsp45I GTSAC 2 cut(s) 391, 838
TspDTI ATGAA 3 cut(s) 162, 203, 536
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 3 cut(s) 316, 396, 475
VpaK11BI GGWCC 1 cut(s) 850
VspI ATTAAT 1 cut(s) 732
XbaI TCTAGA 1 cut(s) 640
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XspI CTAG 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.