Rorug02G0227300

Amino acid kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001779
Physical Location & Seq
Forward (+)
22463417 .. 22464704
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0227300.1

Sequence Viewer

Length: 684 bp
ATGCAAGAAAAATCCATGTCAACAATCACGTCGTCCACCGATCTTTGGAGCTCGAGAAGTCGTGTACTTGTAATTCCTCAGAGAGTTCATCGGAATTTGTTTTCTATAACGGCAATAAAACCTCAGCAGGGATTCACAGCCAATCCTTCGTTGTTGTCTCTCTCAATAGGCCAGAGGAGTAGTGCTCTTAGCAGAAGCGATGCCAAGATGAACAAGATTGTATGCAATGTTTCAGGAGTTCCAACTCCTTCTGGAGCACCTTCACACTCTTGGGGCTGGATGATAGGGATGTTATTGACAGTGGTTATACCCTTTTGGAGGCACAAATGGGGGCCCTTGCAAATAATTAAAAATAAGGTGGACATGGTAATGAACACAGTTGAAGTAGTGGCGGAGGTGGTCGAAACGGTGGCCCATAAAGTGGAGGAGGTGGCGGATGGAATAGCTGATAAACTTCCTGAAGATGGAAAGCTTAAAGCGGCAGTTGAAGCAGTTGAAGCCATAGCTAAAGAAACAGCCAAAGATGCTCACATGGTGGATAAGCTAATTGAGAATGTTGAGGCAGCGGAAGATAAGGTTGAAGACTTCTTTGAGTCGGCCATGCATGGAGCTGGAGATCAGGGGACCAAAGTCGACGACGATGGTGGTGAACAAGGAAATGTAGAAGAAAAGAAAATCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
AA_kinase

Protein Analysis

227

Amino Acids

24.73

Weight (kDa)

5.33

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 421
AccI GTMKAC 1 cut(s) 633
AciI CCGC 4 cut(s) 392, 434, 479, 566
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 480
AdeI CACNNNGTG 1 cut(s) 535
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 5 cut(s) 45, 128, 318, 421, 464
AgsI TTSAA 4 cut(s) 383, 488, 497, 581
AjiI CACGTC 1 cut(s) 30
AluBI AGCT 6 cut(s) 51, 446, 472, 506, 544, 611
AluI AGCT 6 cut(s) 51, 446, 472, 506, 544, 611
Alw21I GWGCWC 3 cut(s) 53, 187, 259
Alw26I GTCTC 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 4 cut(s) 169, 332, 411, 597
ApaI GGGCCC 1 cut(s) 336
ApeKI GCWGC 1 cut(s) 563
ApoI RAATTY 1 cut(s) 94
AspS9I GGNCC 4 cut(s) 332, 333, 412, 624
AsuHPI GGTGA 1 cut(s) 659
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 1 cut(s) 624
BaeGI GKGCMC 1 cut(s) 336
BanII GRGCYC 2 cut(s) 53, 336
BbsI GAAGAC 1 cut(s) 588
Bbv12I GWGCWC 3 cut(s) 53, 187, 259
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 575
BccI CCATC 3 cut(s) 431, 458, 635
BceAI ACGGC 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 162
BisI GCNGC 2 cut(s) 480, 564
BlsI GCNGC 2 cut(s) 481, 565
Bme18I GGWCC 1 cut(s) 624
BmeT110I CYCGRG 1 cut(s) 52
BmgBI CACGTC 1 cut(s) 30
BmgT120I GGNCC 4 cut(s) 332, 333, 412, 624
BmiI GGNNCC 3 cut(s) 333, 334, 625
BmsI GCATC 2 cut(s) 190, 514
BoxI GACNNNNGTC 1 cut(s) 629
BpiI GAAGAC 1 cut(s) 588
BplI GAGNNNNNCTC 2 cut(s) 169, 201
BpmI CTGGAG 2 cut(s) 273, 633
Bpu10I CCTNAGC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 5 cut(s) 45, 128, 318, 421, 464
Bse3DI GCAATG 1 cut(s) 232
BseGI GGATG 3 cut(s) 285, 294, 442
BseLI CCNNNNNNNGG 5 cut(s) 45, 128, 318, 421, 464
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 92, 137
BseRI GAGGAG 2 cut(s) 190, 440
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 1 cut(s) 575
BshFI GGCC 4 cut(s) 171, 334, 413, 599
BsiHKAI GWGCWC 3 cut(s) 53, 187, 259
BsiHKCI CYCGRG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 5 cut(s) 45, 128, 318, 421, 464
BsmAI GTCTC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 637
BsnI GGCC 4 cut(s) 171, 334, 413, 599
BsoBI CYCGRG 1 cut(s) 52
Bsp120I GGGCCC 1 cut(s) 332
Bsp1286I GDGCHC 4 cut(s) 53, 187, 259, 336
Bsp143I GATC 2 cut(s) 40, 616
BspACI CCGC 4 cut(s) 392, 434, 479, 566
BspANI GGCC 4 cut(s) 171, 334, 413, 599
BspCNI CTCAG 2 cut(s) 91, 136
BspLI GGNNCC 3 cut(s) 333, 334, 625
BsrDI GCAATG 1 cut(s) 232
BssMI GATC 2 cut(s) 40, 616
Bst4CI ACNGT 3 cut(s) 301, 379, 409
BstDEI CTNAG 3 cut(s) 78, 123, 188
BstENI CCTNNNNNAGG 1 cut(s) 316
BstF5I GGATG 3 cut(s) 285, 294, 442
BstKTI GATC 2 cut(s) 43, 619
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 2 cut(s) 40, 616
BstMWI GCNNNNNNNGC 3 cut(s) 488, 497, 524
BstPAI GACNNNNGTC 1 cut(s) 629
BstSLI GKGCMC 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 575
BstV2I GAAGAC 1 cut(s) 588
BsuRI GGCC 4 cut(s) 171, 334, 413, 599
BtgZI GCGATG 1 cut(s) 213
BtrI CACGTC 1 cut(s) 30
BtsCI GGATG 3 cut(s) 285, 294, 442
BtsIMutI CAGTG 1 cut(s) 306
Cfr13I GGNCC 4 cut(s) 332, 333, 412, 624
Csp6I GTAC 1 cut(s) 65
CviAII CATG 5 cut(s) 16, 364, 532, 601, 605
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 3 cut(s) 78, 123, 188
DpnI GATC 2 cut(s) 42, 618
DpnII GATC 2 cut(s) 40, 616
DraIII CACNNNGTG 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 597
EciI GGCGGA 2 cut(s) 407, 449
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 2 cut(s) 53, 336
Eco47I GGWCC 1 cut(s) 624
Eco53kI GAGCTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 51
EcoNI CCTNNNNNAGG 1 cut(s) 316
EcoO109I RGGNCCY 2 cut(s) 332, 333
EcoT22I ATGCAT 1 cut(s) 606
EcoT38I GRGCYC 2 cut(s) 53, 336
FaeI CATG 5 cut(s) 19, 367, 535, 604, 608
FaqI GGGAC 1 cut(s) 637
FatI CATG 5 cut(s) 15, 363, 531, 600, 604
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 2 cut(s) 480, 564
FokI GGATG 3 cut(s) 292, 301, 449
FriOI GRGCYC 2 cut(s) 53, 336
Fsp4HI GCNGC 2 cut(s) 480, 564
GluI GCNGC 2 cut(s) 480, 564
GsuI CTGGAG 2 cut(s) 273, 633
HaeIII GGCC 4 cut(s) 171, 334, 413, 599
Hin1II CATG 5 cut(s) 19, 367, 535, 604, 608
HincII GTYRAC 2 cut(s) 21, 634
HindII GTYRAC 2 cut(s) 21, 634
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 2 cut(s) 132, 593
HphI GGTGA 1 cut(s) 659
Hpy166II GTNNAC 6 cut(s) 21, 36, 65, 361, 634, 650
Hpy188I TCNGA 2 cut(s) 81, 93
Hpy188III TCNNGA 4 cut(s) 54, 234, 252, 458
Hpy8I GTNNAC 6 cut(s) 21, 36, 65, 361, 634, 650
Hpy99I CGWCG 3 cut(s) 34, 638, 641
HpyAV CCTTC 3 cut(s) 156, 258, 270
HpyCH4III ACNGT 3 cut(s) 301, 379, 409
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 4 cut(s) 4, 225, 340, 604
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 497, 524
HpyF3I CTNAG 3 cut(s) 78, 123, 188
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 5 cut(s) 19, 367, 535, 604, 608
Kzo9I GATC 2 cut(s) 40, 616
LmnI GCTCC 3 cut(s) 48, 254, 608
LpnPI CCDG 8 cut(s) 113, 185, 219, 237, 262, 471, 597, 605
Lsp1109I GCAGC 1 cut(s) 575
LweI GCATC 2 cut(s) 190, 514
MaeII ACGT 1 cut(s) 29
MalI GATC 2 cut(s) 42, 618
MboI GATC 2 cut(s) 40, 616
MboII GAAGA 4 cut(s) 473, 581, 593, 677
MhlI GDGCHC 4 cut(s) 53, 187, 259, 336
MluCI AATT 4 cut(s) 72, 94, 345, 546
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 8 cut(s) 87, 132, 168, 312, 388, 418, 421, 553
Mph1103I ATGCAT 1 cut(s) 606
MseI TTAA 2 cut(s) 348, 474
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 566
MwoI GCNNNNNNNGC 3 cut(s) 488, 497, 524
NdeII GATC 2 cut(s) 40, 616
NlaIII CATG 5 cut(s) 19, 367, 535, 604, 608
NlaIV GGNNCC 3 cut(s) 333, 334, 625
NsiI ATGCAT 1 cut(s) 606
PaeR7I CTCGAG 1 cut(s) 52
PfeI GAWTC 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 421
PkrI GCNGC 2 cut(s) 481, 565
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
PshAI GACNNNNGTC 1 cut(s) 629
Psp124BI GAGCTC 1 cut(s) 53
PspN4I GGNNCC 3 cut(s) 333, 334, 625
PspOMI GGGCCC 1 cut(s) 332
PspPI GGNCC 4 cut(s) 332, 333, 412, 624
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 368
SacI GAGCTC 1 cut(s) 53
SalI GTCGAC 1 cut(s) 632
SaqAI TTAA 2 cut(s) 348, 474
SatI GCNGC 2 cut(s) 480, 564
Sau3AI GATC 2 cut(s) 40, 616
Sau96I GGNCC 4 cut(s) 332, 333, 412, 624
SchI GAGTC 1 cut(s) 602
SduI GDGCHC 4 cut(s) 53, 187, 259, 336
SfaNI GCATC 2 cut(s) 190, 514
Sfr274I CTCGAG 1 cut(s) 52
SinI GGWCC 1 cut(s) 624
SlaI CTCGAG 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 4 cut(s) 72, 94, 345, 546
SsiI CCGC 4 cut(s) 392, 434, 479, 566
SstI GAGCTC 1 cut(s) 53
TaaI ACNGT 3 cut(s) 301, 379, 409
TaiI ACGT 1 cut(s) 32
TaqI TCGA 4 cut(s) 53, 402, 633, 678
TasI AATT 4 cut(s) 72, 94, 345, 546
TatI WGTACW 1 cut(s) 64
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 2 cut(s) 348, 474
Tru9I TTAA 2 cut(s) 348, 474
TscAI CASTG 1 cut(s) 306
TseI GCWGC 1 cut(s) 563
TspDTI ATGAA 3 cut(s) 77, 224, 386
TspRI CASTG 1 cut(s) 306
Van91I CCANNNNNTGG 1 cut(s) 421
VpaK11BI GGWCC 1 cut(s) 624
XagI CCTNNNNNAGG 1 cut(s) 316
XapI RAATTY 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 633
Zsp2I ATGCAT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.