Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001779

Physical Location & Seq

Genomic Coordinates Forward (+)

3616137 .. 3618180

Gene Structure 2044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G003810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTATCCAAATCATTTGGATCAGAACCCATATACTCCAGCGAAGTACAAGGCAGTAGAGGAGAACATACTGAAGGTGATGAAGGCGAAAAGTGCTTGTGCCGAGAATCCAATTCAGAGAGCACCACTGAGGTCTGAGGCCCGGAAGTTGATAGGGGACACTGGTTTGGTGGACCATTTGTTAAAGCATATGGCTGGGAAGGTAGCTCCGGGTGGCGCTGATCGGTTTCGGAGAAGGCATAATGCTGATGGAGCACTTATGTATTGGCTGGAGAGTGCTGAGTTGATGAGTCTAAGGAAGGAGGCTGGGGTTGAGGATCCTTATTGGACTCCACCCCCCGGGTGGAAGGTTGGGGATAACCAAACTCAGGACCCTACTTGTGTGAGGATGTTCAAGGAGATTTGGGAAGAGATAGCCAATGTGAAAAGGTACGGTAATGGGATCAATTACCTTGTTATTGTTGAATCTGTTTGGATTGTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

161

Amino Acids

18.32

Weight (kDa)

7.76

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	12 - 92	8e-22	Winged helix-turn-helix domain in plant reproductive proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51330 AT5G51330
fragaria_vesca	FvH4_1g24020 FvH4_1g24020 FvH4_7g27150 FvH4_7g27150 FvH4_7g27150 FvH4_7g27150
malus_domestica	MD01G1180700.v1.1 MD07G1251100.v1.1
prunus_persica	Prupe.2G133400_v2.0.a1 Prupe.2G133400_v2.0.a1 Prupe.2G274700_v2.0.a1
pyrus_communis	pycom01g19090
rosa_chinensis	RchiOBHm_Chr1g0373991 RchiOBHm_Chr2g0120161
rosa_laevigata	RLG00000016013 RLG00000018527 RLG00000026788
rosa_multiflora	Rmu_co8084184.1_g000001 Rmu_co8202680.1_g000001 Rmu_co8293435.1_g000001 Rmu_co8298741.1_g000001 Rmu_sc0005304.1_g000004 Rmu_sc0008322.1_g000013 Rmu_sc0015468.1_g000001 Rmu_sc0015469.1_g000002 Rmu_sc0020978.1_g000001 Rmu_sc0020979.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123660 Rroxscaffold_4G00283840 Rroxscaffold_4G00283860
rosa_rugosa	Rorug01G0380000 Rorug01G0380100 Rorug02G0227300
rosa_samantha	Rh1AG390500 Rh1BG354600 Rh1CG367700 Rh1DG385300 Rh2AG283900 Rh2BG295200 Rh2CG272600 Rh2DG044200 Rh2DG308900
rosa_wichuraiana	Rw1G034470 Rw2G003810 Rw2G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	27, 311, 324, 449
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	2 cut(s)	47, 431
AfiI	CCNNNNNNNGG	3 cut(s)	338, 342, 367
AgsI	TTSAA	2 cut(s)	394, 464
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
Alw21I	GWGCWC	2 cut(s)	124, 256
AlwI	GGATC	4 cut(s)	27, 311, 324, 449
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	3 cut(s)	139, 172, 370
AsuC2I	CCSGG	4 cut(s)	142, 210, 339, 340
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	172, 370
BamHI	GGATCC	1 cut(s)	316
Bbv12I	GWGCWC	2 cut(s)	124, 256
BccI	CCATC	1 cut(s)	242
BciVI	GTATCC	1 cut(s)	15
BcnI	CCSGG	4 cut(s)	142, 210, 339, 340
BfoI	RGCGCY	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	15
Bme1390I	CCNGG	4 cut(s)	142, 210, 339, 340
Bme18I	GGWCC	2 cut(s)	172, 370
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	3 cut(s)	139, 172, 370
BmiI	GGNNCC	2 cut(s)	318, 372
BmrFI	CCNGG	4 cut(s)	142, 210, 339, 340
BpmI	CTGGAG	2 cut(s)	21, 290
BpuMI	CCSGG	4 cut(s)	142, 210, 339, 340
BsaJI	CCNNGG	2 cut(s)	337, 338
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 342, 367
Bse1I	ACTGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	337, 338
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	3 cut(s)	338, 342, 367
BseMII	CTCAG	4 cut(s)	119, 126, 270, 380
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	74
BseYI	CCCAGC	2 cut(s)	194, 305
BshFI	GGCC	1 cut(s)	140
BsiHKAI	GWGCWC	2 cut(s)	124, 256
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	3 cut(s)	142, 209, 339
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	338, 342, 367
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	124, 256
Bsp143I	GATC	4 cut(s)	19, 220, 316, 441
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	4 cut(s)	120, 127, 271, 379
BspLI	GGNNCC	2 cut(s)	318, 372
BspPI	GGATC	4 cut(s)	27, 311, 324, 449
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	337, 338
BssMI	GATC	4 cut(s)	19, 220, 316, 441
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	402
BstDEI	CTNAG	5 cut(s)	128, 135, 279, 293, 366
BstF5I	GGATG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	4 cut(s)	22, 223, 319, 444
BstMBI	GATC	4 cut(s)	19, 220, 316, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 251
BstSCI	CCNGG	4 cut(s)	140, 208, 337, 338
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	125, 159
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	139, 172, 370
Cfr9I	CCCGGG	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	46, 430
CviJI	RGCY	6 cut(s)	140, 194, 206, 268, 305, 416
CviKI_1	RGCY	6 cut(s)	140, 194, 206, 268, 305, 416
CviQI	GTAC	2 cut(s)	46, 430
DdeI	CTNAG	5 cut(s)	128, 135, 279, 293, 366
DpnI	GATC	4 cut(s)	21, 222, 318, 443
DpnII	GATC	4 cut(s)	19, 220, 316, 441
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco47I	GGWCC	2 cut(s)	172, 370
Eco57I	CTGAAG	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	370
FaiI	YATR	7 cut(s)	31, 33, 68, 189, 191, 240, 260
FaqI	GGGAC	1 cut(s)	170
FauNDI	CATATG	1 cut(s)	189
FokI	GGATG	1 cut(s)	400
GlaI	GCGC	1 cut(s)	217
GsaI	CCCAGC	2 cut(s)	198, 309
GsuI	CTGGAG	2 cut(s)	21, 290
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	3 cut(s)	142, 209, 339
HhaI	GCGC	1 cut(s)	218
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	4 cut(s)	106, 289, 328, 464
HpaII	CCGG	3 cut(s)	142, 209, 339
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	4 cut(s)	24, 117, 136, 231
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	6 cut(s)	67, 76, 193, 228, 292, 340
HpyCH4III	ACNGT	1 cut(s)	434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 251
HpyF3I	CTNAG	5 cut(s)	128, 135, 279, 293, 366
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	4 cut(s)	19, 220, 316, 441
LmnI	GCTCC	2 cut(s)	211, 251
LpnPI	CCDG	9 cut(s)	51, 147, 155, 180, 222, 254, 291, 352, 353
MalI	GATC	4 cut(s)	21, 222, 318, 443
MboI	GATC	4 cut(s)	19, 220, 316, 441
MboII	GAAGA	1 cut(s)	419
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	2 cut(s)	124, 256
MluCI	AATT	2 cut(s)	111, 445
MlyI	GAGTC	2 cut(s)	298, 322
MnlI	CCTC	6 cut(s)	52, 123, 130, 295, 307, 378
MseI	TTAA	1 cut(s)	182
MspI	CCGG	3 cut(s)	142, 209, 339
MspR9I	CCNGG	4 cut(s)	142, 210, 339, 340
MwoI	GCNNNNNNNGC	2 cut(s)	92, 251
NciI	CCSGG	4 cut(s)	142, 210, 339, 340
NdeI	CATATG	1 cut(s)	189
NdeII	GATC	4 cut(s)	19, 220, 316, 441
NlaIV	GGNNCC	2 cut(s)	318, 372
NmeAIII	GCCGAG	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	106, 464
PleI	GAGTC	2 cut(s)	297, 322
PpsI	GAGTC	2 cut(s)	297, 322
PpuMI	RGGWCCY	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	370
PspFI	CCCAGC	2 cut(s)	194, 305
PspN4I	GGNNCC	2 cut(s)	318, 372
PspPI	GGNCC	3 cut(s)	139, 172, 370
PspPPI	RGGWCCY	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	2 cut(s)	47, 431
RsaNI	GTAC	2 cut(s)	46, 430
SaqAI	TTAA	1 cut(s)	182
Sau3AI	GATC	4 cut(s)	19, 220, 316, 441
Sau96I	GGNCC	3 cut(s)	139, 172, 370
SchI	GAGTC	2 cut(s)	298, 322
ScrFI	CCNGG	4 cut(s)	142, 210, 339, 340
SduI	GDGCHC	2 cut(s)	124, 256
SetI	ASST	7 cut(s)	78, 134, 204, 208, 351, 431, 453
SinI	GGWCC	2 cut(s)	172, 370
SmaI	CCCGGG	1 cut(s)	340
Sse9I	AATT	2 cut(s)	111, 445
StyD4I	CCNGG	4 cut(s)	140, 208, 337, 338
TaaI	ACNGT	1 cut(s)	434
TasI	AATT	2 cut(s)	111, 445
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	2 cut(s)	106, 464
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	2 cut(s)	132, 166
TspDTI	ATGAA	1 cut(s)	95
TspMI	CCCGGG	1 cut(s)	338
TspRI	CASTG	2 cut(s)	132, 166
VpaK11BI	GGWCC	2 cut(s)	172, 370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
XmaI	CCCGGG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.