RLG00000016013

Amino acid kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001779
Physical Location & Seq
Reverse (-)
3165185 .. 3169031
3847 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016013

Sequence Viewer

Length: 1062 bp
ATGAATGGCTTCCAGGTGAATGAAAAGTCTCGGTTTAAGGTTTCAGTGAGGTTTCCAAGCTTTCACTCACTACAAAACCGTCTGAATGAGGAAAGCTACCAAAACCCGGACGGCTTGCTTCCTGCTTTCGACGAAAACTACTCGATGGCTCCACAAATCGTGTCGGAGGAGCTTTACCGGAGAATCCCACGTCACGAAATAGCAGAGCACAGCCGGAAGTGGAGATTTTGGGCCCGACGGCGTCGTTTCGCTACCCGGCAAAGGCCATCTCCCGTAAACCATTCCAGGTGCGTTACTAGGAATGAGACTCTGTCGAGCTCTGACCAAGAACAACCAGAGAAGGAAGAAACAGAGATGGGTGAAGATGTGAAAGAGCCTCGTTATGAGTTTAGAAAGAGAAAACTGGTTCAAAAGAAGACCAAAGCAGCGAAGCGTCGGAAGCAGAACAATCAAATAGTGGTTCATGATCGGACCCAGAACCAATTGGTTGAAGGCTCAATAGAGAGATGGACTGCAAGGAGGTACGAGGCAGCAGAGGAGAACATACTGAAGGTGATGAAGGCGAAAAGTGCTTGTGCCGAGAATCCAATTCAGAGAGCACCACTGAGGTCTGAGGCCCGGAAGTTGATAGGGGACACTGGTTTGGTGGACCATTTGTTAAAGCATATGGCTGGGAAGTTAGCTCCGGGTGGAGCTGATCGAGTGCTGAGTCTAAGGAAGGAGGCTGGGGTTGAGGATCCTTATTGGACTCCACCCCCCGGGTGGAAGGTTGGGGATAACCAAACTCAGGACCCTACTTGTGTGAGGATGTTCGAGGAGATTTGGGAAGAGATATCCAATTTGAAAAGGAACCGTAATGGGATCAATTGCCTTGAGTCGCAAGACAAGTACACGGAACTAGCTGTTATGAAGTCTAGGATTGAAGAACAGATGCTGCAACTTTATCAATCTTTATCTGGAATTGAGGAAGAAATGAACTCATTGCTGGAAGAAATAAGGGGCGCTCACTTACTAGGGAGAGCATCAAAATACGGTGAAAGCCAAAAGGACCGTGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
AA_kinase

Protein Analysis

354

Amino Acids

41.12

Weight (kDa)

9.27

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_plant_repro PF25874 169 - 228 5.9e-19 Winged helix-turn-helix domain in plant reproductive proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 731, 744, 869
AcuI CTGAAG 1 cut(s) 569
AcyI GRCGYC 1 cut(s) 241
AfaI GTAC 2 cut(s) 524, 890
AfiI CCNNNNNNNGG 5 cut(s) 106, 261, 758, 762, 787
AgsI TTSAA 4 cut(s) 410, 491, 844, 923
AjiI CACGTC 1 cut(s) 191
AjnI CCWGG 2 cut(s) 12, 284
AluBI AGCT 7 cut(s) 60, 96, 172, 318, 683, 695, 902
AluI AGCT 7 cut(s) 60, 96, 172, 318, 683, 695, 902
Alw21I GWGCWC 3 cut(s) 210, 320, 601
Alw26I GTCTC 2 cut(s) 33, 299
AlwI GGATC 3 cut(s) 731, 744, 869
AlwNI CAGNNNCTG 1 cut(s) 934
Ama87I CYCGRG 1 cut(s) 758
AoxI GGCC 3 cut(s) 231, 263, 615
ApaI GGGCCC 1 cut(s) 235
ApeKI GCWGC 3 cut(s) 425, 530, 934
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 1004
AspS9I GGNCC 7 cut(s) 231, 232, 471, 616, 649, 790, 1048
AsuC2I CCSGG 6 cut(s) 107, 256, 619, 687, 759, 760
AsuHPI GGTGA 4 cut(s) 28, 371, 565, 1046
AvaI CYCGRG 1 cut(s) 758
AvaII GGWCC 4 cut(s) 471, 649, 790, 1048
BaeGI GKGCMC 1 cut(s) 235
BamHI GGATCC 1 cut(s) 736
BanII GRGCYC 2 cut(s) 235, 320
BbsI GAAGAC 1 cut(s) 422
Bbv12I GWGCWC 3 cut(s) 210, 320, 601
BbvI GCAGC 3 cut(s) 437, 542, 921
BccI CCATC 4 cut(s) 139, 274, 349, 501
BceAI ACGGC 2 cut(s) 127, 254
BciT130I CCWGG 2 cut(s) 14, 286
BcnI CCSGG 6 cut(s) 107, 256, 619, 687, 759, 760
BcoDI GTCTC 2 cut(s) 33, 299
BfaI CTAG 4 cut(s) 297, 899, 915, 1013
BfoI RGCGCY 1 cut(s) 1005
BisI GCNGC 3 cut(s) 426, 531, 935
BlsI GCNGC 3 cut(s) 427, 532, 936
Bme1390I CCNGG 8 cut(s) 14, 107, 256, 286, 619, 687, 759, 760
Bme18I GGWCC 4 cut(s) 471, 649, 790, 1048
BmeT110I CYCGRG 1 cut(s) 758
BmgBI CACGTC 1 cut(s) 191
BmgT120I GGNCC 7 cut(s) 231, 232, 471, 616, 649, 790, 1048
BmiI GGNNCC 6 cut(s) 150, 233, 473, 738, 792, 851
BmrFI CCNGG 8 cut(s) 14, 107, 256, 286, 619, 687, 759, 760
BmsI GCATC 2 cut(s) 921, 1031
BpiI GAAGAC 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 893
BpuMI CCSGG 6 cut(s) 107, 256, 619, 687, 759, 760
BsaHI GRCGYC 1 cut(s) 241
BsaJI CCNNGG 3 cut(s) 757, 758, 1051
BsaWI WCCGGW 1 cut(s) 177
Bsc4I CCNNNNNNNGG 5 cut(s) 106, 261, 758, 762, 787
Bse1I ACTGG 2 cut(s) 408, 643
Bse3DI GCAATG 1 cut(s) 980
BseBI CCWGG 2 cut(s) 14, 286
BseDI CCNNGG 3 cut(s) 757, 758, 1051
BseGI GGATG 1 cut(s) 813
BseLI CCNNNNNNNGG 5 cut(s) 106, 261, 758, 762, 787
BseMI GCAATG 1 cut(s) 980
BseMII CTCAG 4 cut(s) 596, 603, 698, 800
BseNI ACTGG 2 cut(s) 408, 643
BseRI GAGGAG 3 cut(s) 182, 551, 830
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 3 cut(s) 437, 542, 921
BseYI CCCAGC 2 cut(s) 671, 725
BshFI GGCC 3 cut(s) 233, 265, 617
BsiHKAI GWGCWC 3 cut(s) 210, 320, 601
BsiHKCI CYCGRG 1 cut(s) 758
BsiSI CCGG 7 cut(s) 107, 178, 214, 256, 619, 686, 759
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 5 cut(s) 106, 261, 758, 762, 787
BsmAI GTCTC 2 cut(s) 33, 299
BsmFI GGGAC 1 cut(s) 647
BsnI GGCC 3 cut(s) 233, 265, 617
BsoBI CYCGRG 1 cut(s) 758
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 4 cut(s) 210, 235, 320, 601
Bsp143I GATC 4 cut(s) 466, 697, 736, 861
BspANI GGCC 3 cut(s) 233, 265, 617
BspCNI CTCAG 4 cut(s) 597, 604, 699, 799
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 6 cut(s) 150, 233, 473, 738, 792, 851
BspPI GGATC 3 cut(s) 731, 744, 869
BsrDI GCAATG 1 cut(s) 980
BsrI ACTGG 2 cut(s) 408, 643
BssECI CCNNGG 3 cut(s) 757, 758, 1051
BssMI GATC 4 cut(s) 466, 697, 736, 861
BssNI GRCGYC 1 cut(s) 241
Bst2UI CCWGG 2 cut(s) 14, 286
Bst4CI ACNGT 4 cut(s) 80, 854, 1034, 1052
Bst6I CTCTTC 1 cut(s) 822
BstACI GRCGYC 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 5 cut(s) 605, 612, 707, 713, 786
BstDSI CCRYGG 1 cut(s) 1051
BstF5I GGATG 1 cut(s) 813
BstH2I RGCGCY 1 cut(s) 1005
BstHHI GCGC 1 cut(s) 1004
BstKTI GATC 4 cut(s) 469, 700, 739, 864
BstMAI GTCTC 2 cut(s) 33, 299
BstMBI GATC 4 cut(s) 466, 697, 736, 861
BstMWI GCNNNNNNNGC 2 cut(s) 439, 569
BstNI CCWGG 2 cut(s) 14, 286
BstSCI CCNGG 8 cut(s) 12, 105, 254, 284, 617, 685, 757, 758
BstSLI GKGCMC 1 cut(s) 235
BstV1I GCAGC 3 cut(s) 437, 542, 921
BstV2I GAAGAC 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 736
BstYI RGATCY 1 cut(s) 736
BsuRI GGCC 3 cut(s) 233, 265, 617
BtgI CCRYGG 1 cut(s) 1051
BtrI CACGTC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 813
BtsIMutI CAGTG 3 cut(s) 51, 602, 636
Cac8I GCNNGC 1 cut(s) 116
CaiI CAGNNNCTG 1 cut(s) 934
CciI TCATGA 1 cut(s) 463
CfoI GCGC 1 cut(s) 1004
Cfr13I GGNCC 7 cut(s) 231, 232, 471, 616, 649, 790, 1048
Cfr9I CCCGGG 1 cut(s) 758
CseI GACGC 2 cut(s) 230, 422
Csp6I GTAC 2 cut(s) 523, 889
CviAII CATG 2 cut(s) 464, 1059
CviQI GTAC 2 cut(s) 523, 889
DdeI CTNAG 5 cut(s) 605, 612, 707, 713, 786
DpnI GATC 4 cut(s) 468, 699, 738, 863
DpnII GATC 4 cut(s) 466, 697, 736, 861
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
Ecl136II GAGCTC 1 cut(s) 318
Eco24I GRGCYC 2 cut(s) 235, 320
Eco32I GATATC 1 cut(s) 834
Eco47I GGWCC 4 cut(s) 471, 649, 790, 1048
Eco53kI GAGCTC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 569
Eco88I CYCGRG 1 cut(s) 758
EcoICRI GAGCTC 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 790
EcoRII CCWGG 2 cut(s) 12, 284
EcoRV GATATC 1 cut(s) 834
EcoT38I GRGCYC 2 cut(s) 235, 320
FaeI CATG 2 cut(s) 467, 1062
FaiI YATR 7 cut(s) 384, 465, 545, 666, 668, 908, 1060
FaqI GGGAC 1 cut(s) 647
FatI CATG 2 cut(s) 463, 1058
FauNDI CATATG 1 cut(s) 666
Fnu4HI GCNGC 3 cut(s) 426, 531, 935
FokI GGATG 1 cut(s) 820
FriOI GRGCYC 2 cut(s) 235, 320
Fsp4HI GCNGC 3 cut(s) 426, 531, 935
FspBI CTAG 4 cut(s) 297, 899, 915, 1013
GlaI GCGC 1 cut(s) 1003
GluI GCNGC 3 cut(s) 426, 531, 935
GsaI CCCAGC 2 cut(s) 675, 729
HaeII RGCGCY 1 cut(s) 1005
HaeIII GGCC 3 cut(s) 233, 265, 617
HapII CCGG 7 cut(s) 107, 178, 214, 256, 619, 686, 759
HgaI GACGC 2 cut(s) 230, 422
HhaI GCGC 1 cut(s) 1004
Hin1I GRCGYC 1 cut(s) 241
Hin1II CATG 2 cut(s) 467, 1062
Hin6I GCGC 1 cut(s) 1002
HinP1I GCGC 1 cut(s) 1002
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 6 cut(s) 183, 307, 583, 709, 748, 875
HpaII CCGG 7 cut(s) 107, 178, 214, 256, 619, 686, 759
HphI GGTGA 4 cut(s) 28, 371, 565, 1046
Hpy166II GTNNAC 3 cut(s) 277, 649, 891
Hpy188I TCNGA 7 cut(s) 84, 166, 322, 438, 471, 594, 613
Hpy188III TCNNGA 4 cut(s) 194, 464, 788, 957
Hpy8I GTNNAC 3 cut(s) 277, 649, 891
Hpy99I CGWCG 4 cut(s) 134, 240, 246, 438
HpyAV CCTTC 6 cut(s) 334, 485, 544, 553, 712, 760
HpyCH4III ACNGT 4 cut(s) 80, 854, 1034, 1052
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 515, 937
HpyF10VI GCNNNNNNNGC 2 cut(s) 439, 569
HpyF3I CTNAG 5 cut(s) 605, 612, 707, 713, 786
HpySE526I ACGT 1 cut(s) 190
Hsp92I GRCGYC 1 cut(s) 241
Hsp92II CATG 2 cut(s) 467, 1062
HspAI GCGC 1 cut(s) 1002
Kzo9I GATC 4 cut(s) 466, 697, 736, 861
LmnI GCTCC 5 cut(s) 154, 169, 688, 692, 1055
Lsp1109I GCAGC 3 cut(s) 437, 542, 921
LweI GCATC 2 cut(s) 921, 1031
MaeI CTAG 4 cut(s) 297, 899, 915, 1013
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 2 cut(s) 191, 292
MalI GATC 4 cut(s) 468, 699, 738, 863
MboI GATC 4 cut(s) 466, 697, 736, 861
MboII GAAGA 7 cut(s) 356, 374, 427, 839, 935, 980, 1001
MfeI CAATTG 2 cut(s) 482, 865
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 4 cut(s) 210, 235, 320, 601
MluCI AATT 5 cut(s) 482, 588, 838, 865, 960
MlyI GAGTC 4 cut(s) 301, 718, 742, 884
MmeI TCCRAC 2 cut(s) 144, 416
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 36, 659
MspI CCGG 7 cut(s) 107, 178, 214, 256, 619, 686, 759
MspR9I CCNGG 8 cut(s) 14, 107, 256, 286, 619, 687, 759, 760
MunI CAATTG 2 cut(s) 482, 865
MvaI CCWGG 2 cut(s) 14, 286
MwoI GCNNNNNNNGC 2 cut(s) 439, 569
NciI CCSGG 6 cut(s) 107, 256, 619, 687, 759, 760
NdeI CATATG 1 cut(s) 666
NdeII GATC 4 cut(s) 466, 697, 736, 861
NlaIII CATG 2 cut(s) 467, 1062
NlaIV GGNNCC 6 cut(s) 150, 233, 473, 738, 792, 851
NmeAIII GCCGAG 1 cut(s) 604
NmuCI GTSAC 1 cut(s) 191
PagI TCATGA 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 183, 583
PflFI GACNNNGTC 2 cut(s) 240, 310
PkrI GCNGC 3 cut(s) 427, 532, 936
PleI GAGTC 4 cut(s) 301, 717, 742, 883
PpsI GAGTC 4 cut(s) 301, 717, 742, 883
PpuMI RGGWCCY 1 cut(s) 790
Psp124BI GAGCTC 1 cut(s) 320
Psp5II RGGWCCY 1 cut(s) 790
Psp6I CCWGG 2 cut(s) 12, 284
PspFI CCCAGC 2 cut(s) 671, 725
PspGI CCWGG 2 cut(s) 12, 284
PspN4I GGNNCC 6 cut(s) 150, 233, 473, 738, 792, 851
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 7 cut(s) 231, 232, 471, 616, 649, 790, 1048
PspPPI RGGWCCY 1 cut(s) 790
PstNI CAGNNNCTG 1 cut(s) 934
PsuI RGATCY 1 cut(s) 736
PsyI GACNNNGTC 2 cut(s) 240, 310
RsaI GTAC 2 cut(s) 524, 890
RsaNI GTAC 2 cut(s) 523, 889
SacI GAGCTC 1 cut(s) 320
SaqAI TTAA 2 cut(s) 36, 659
SatI GCNGC 3 cut(s) 426, 531, 935
Sau3AI GATC 4 cut(s) 466, 697, 736, 861
Sau96I GGNCC 7 cut(s) 231, 232, 471, 616, 649, 790, 1048
SchI GAGTC 4 cut(s) 301, 718, 742, 884
ScrFI CCNGG 8 cut(s) 14, 107, 256, 286, 619, 687, 759, 760
SduI GDGCHC 4 cut(s) 210, 235, 320, 601
SfaNI GCATC 2 cut(s) 921, 1031
SinI GGWCC 4 cut(s) 471, 649, 790, 1048
SmaI CCCGGG 1 cut(s) 760
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
Sse9I AATT 5 cut(s) 482, 588, 838, 865, 960
SspMI CTAG 4 cut(s) 297, 899, 915, 1013
SstI GAGCTC 1 cut(s) 320
StyD4I CCNGG 8 cut(s) 12, 105, 254, 284, 617, 685, 757, 758
TaaI ACNGT 4 cut(s) 80, 854, 1034, 1052
TaiI ACGT 1 cut(s) 193
TaqI TCGA 5 cut(s) 129, 143, 314, 700, 813
TasI AATT 5 cut(s) 482, 588, 838, 865, 960
TatI WGTACW 1 cut(s) 888
TfiI GAWTC 2 cut(s) 183, 583
Tru1I TTAA 2 cut(s) 36, 659
Tru9I TTAA 2 cut(s) 36, 659
TscAI CASTG 3 cut(s) 51, 609, 643
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 3 cut(s) 425, 530, 934
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 6 cut(s) 17, 36, 452, 572, 923, 989
TspGWI ACGGA 1 cut(s) 908
TspMI CCCGGG 1 cut(s) 758
TspRI CASTG 3 cut(s) 51, 609, 643
Tth111I GACNNNGTC 2 cut(s) 240, 310
VpaK11BI GGWCC 4 cut(s) 471, 649, 790, 1048
XcmI CCANNNNNNNNNTGG 2 cut(s) 759, 1049
XmaI CCCGGG 1 cut(s) 758
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 297, 899, 915, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.