Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8084184.1

Orthogroup ID

OG0001779

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 587

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8084184.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 476 bp

agaagaagaagcccaaacgtcaagaacagagtaagcagattgtggtgcacaatgggagtgagaagagaatggttaaagcttcagtggcaagatggtctgctgggaggtataagttggcagaggagaacatgtttaaggtaatgaaggcaaggggggctactgctgggaacccaataaggagaccggctctgagaaatgaggcccggaagatgatcggcgacacgggtttgattgaccacttgctgaagcatatggctggcaaggtggctccaggtggggttgataggtttcggaggcggcacaatgctgatggggcaatggagtattggcttgagagtgctgatttggttgagataaggaaggaggctggggttgaagacccttattggactccaccacaggggtggaagcctggtgatgaccctacccaagacccaacttgtgcagcaatgtttaaggagctgtgggatgagata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

158

Amino Acids

17.94

Weight (kDa)

9.68

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51330 AT5G51330
fragaria_vesca	FvH4_1g24020 FvH4_1g24020 FvH4_7g27150 FvH4_7g27150 FvH4_7g27150 FvH4_7g27150
malus_domestica	MD01G1180700.v1.1 MD07G1251100.v1.1
prunus_persica	Prupe.2G133400_v2.0.a1 Prupe.2G133400_v2.0.a1 Prupe.2G274700_v2.0.a1
pyrus_communis	pycom01g19090
rosa_chinensis	RchiOBHm_Chr1g0373991 RchiOBHm_Chr2g0120161
rosa_laevigata	RLG00000016013 RLG00000018527 RLG00000026788
rosa_multiflora	Rmu_co8084184.1_g000001 Rmu_co8202680.1_g000001 Rmu_co8293435.1_g000001 Rmu_co8298741.1_g000001 Rmu_sc0005304.1_g000004 Rmu_sc0008322.1_g000013 Rmu_sc0015468.1_g000001 Rmu_sc0015469.1_g000002 Rmu_sc0020978.1_g000001 Rmu_sc0020979.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123660 Rroxscaffold_4G00283840 Rroxscaffold_4G00283860
rosa_rugosa	Rorug01G0380000 Rorug01G0380100 Rorug02G0227300
rosa_samantha	Rh1AG390500 Rh1BG354600 Rh1CG367700 Rh1DG385300 Rh2AG283900 Rh2BG295200 Rh2CG272600 Rh2DG044200 Rh2DG308900
rosa_wichuraiana	Rw1G034470 Rw2G003810 Rw2G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	297
AcuI	CTGAAG	2 cut(s)	65, 265
AfiI	CCNNNNNNNGG	1 cut(s)	400
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	376
AjnI	CCWGG	2 cut(s)	270, 411
AleI	CACNNNNGTG	1 cut(s)	402
AluBI	AGCT	2 cut(s)	79, 462
AluI	AGCT	2 cut(s)	79, 462
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	174
Alw44I	GTGCAC	1 cut(s)	46
AoxI	GGCC	1 cut(s)	200
ApaLI	GTGCAC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	201
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	427
BaeGI	GKGCMC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	2 cut(s)	86, 304
BciT130I	CCWGG	2 cut(s)	272, 413
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	174
BisI	GCNGC	2 cut(s)	298, 446
BlsI	GCNGC	2 cut(s)	299, 447
Bme1390I	CCNGG	3 cut(s)	204, 272, 413
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	169, 269
BmrFI	CCNGG	3 cut(s)	204, 272, 413
BpiI	GAAGAC	1 cut(s)	383
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BpmI	CTGGAG	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	352
BpuMI	CCSGG	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse118I	RCCGGY	1 cut(s)	183
Bse3DI	GCAATG	2 cut(s)	323, 455
BseBI	CCWGG	2 cut(s)	272, 413
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMI	GCAATG	2 cut(s)	323, 455
BseMII	CTCAG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	3 cut(s)	100, 163, 367
BsgI	GTGCAG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	184, 204
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	202
Bso31I	GGTCTC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	212
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	169, 269
BspTNI	GGTCTC	1 cut(s)	174
BsrDI	GCAATG	2 cut(s)	323, 455
BsrFI	RCCGGY	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	183
BssMI	GATC	1 cut(s)	212
Bst2UI	CCWGG	2 cut(s)	272, 413
Bst6I	CTCTTC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	474
BstKTI	GATC	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 154, 313
BstNI	CCWGG	2 cut(s)	272, 413
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	3 cut(s)	202, 270, 411
BstSLI	GKGCMC	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	383
BstXI	CCANNNNNNTGG	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	201
CviAII	CATG	1 cut(s)	129
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	65, 265
EcoRII	CCWGG	2 cut(s)	270, 411
FaeI	CATG	1 cut(s)	132
FaiI	YATR	4 cut(s)	110, 130, 251, 253
FatI	CATG	1 cut(s)	128
FauNDI	CATATG	1 cut(s)	251
Fnu4HI	GCNGC	2 cut(s)	298, 446
Fsp4HI	GCNGC	2 cut(s)	298, 446
GluI	GCNGC	2 cut(s)	298, 446
GsaI	CCCAGC	3 cut(s)	104, 167, 371
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	2 cut(s)	184, 204
Hin1II	CATG	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	2 cut(s)	184, 204
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	191, 293
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	138, 354
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	48, 445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 154, 313
HpyF3I	CTNAG	1 cut(s)	190
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	212
LmnI	GCTCC	2 cut(s)	273, 459
Lsp1109I	GCAGC	1 cut(s)	457
MaeII	ACGT	1 cut(s)	18
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	5 cut(s)	15, 18, 75, 219, 388
MhlI	GDGCHC	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	384
MnlI	CCTC	5 cut(s)	98, 114, 192, 287, 357
MseI	TTAA	3 cut(s)	74, 134, 455
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	2 cut(s)	184, 204
MspR9I	CCNGG	3 cut(s)	204, 272, 413
MvaI	CCWGG	2 cut(s)	272, 413
MwoI	GCNNNNNNNGC	3 cut(s)	85, 154, 313
NciI	CCSGG	1 cut(s)	204
NdeI	CATATG	1 cut(s)	251
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	1 cut(s)	132
NlaIV	GGNNCC	2 cut(s)	169, 269
NspI	RCATGY	1 cut(s)	132
OliI	CACNNNNGTG	1 cut(s)	402
PciI	ACATGT	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	299, 447
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PscI	ACATGT	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	270, 411
PspFI	CCCAGC	3 cut(s)	100, 163, 367
PspGI	CCWGG	2 cut(s)	270, 411
PspN4I	GGNNCC	2 cut(s)	169, 269
PspPI	GGNCC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	74, 134, 455
SatI	GCNGC	2 cut(s)	298, 446
Sau3AI	GATC	1 cut(s)	212
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	3 cut(s)	204, 272, 413
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	8 cut(s)	21, 81, 109, 140, 266, 276, 289, 464
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
SsiI	CCGC	1 cut(s)	297
StyD4I	CCNGG	3 cut(s)	202, 270, 411
TaiI	ACGT	1 cut(s)	21
TauI	GCSGC	1 cut(s)	300
Tru1I	TTAA	3 cut(s)	74, 134, 455
Tru9I	TTAA	3 cut(s)	74, 134, 455
TscAI	CASTG	1 cut(s)	89
TseI	GCWGC	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	157
TspRI	CASTG	1 cut(s)	89
VneI	GTGCAC	1 cut(s)	46
XceI	RCATGY	1 cut(s)	132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.