Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001779

Physical Location & Seq

Genomic Coordinates Reverse (-)

5670959 .. 5671477

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTCAACAAATCGCGTCGGAGGTGCTTTACCGGAGAATCCCACATCACGAAATAGCAGAGCAGAGCTGGATGTGGAGCTTTTGGGCCGGACGGCATCGATTGGCAACCCGGAAAAGCCCATCTCCGTGTTGCTTGTCGGAGATTACGCTCGGCGGGATGGTCCAATGGGGAAAGCGCAAACTAGTCCGGTGCGTTACGAGGTATGAGAGTCTGTCGAGCTCTGACCAAGAACAACAAGAGAAGGTAGAAACAGAGATAGATGAAGGTGTGAAAGAGCCTCGTTATGCGTTTAGGAAGAGAAAACTGGTTCAAAACAAGACCAGAGCAGTGAAGCGTCGGAAGCAGAACAATCAAATAGTGGTTCATAATCGGACCCAAAACCAATTGGTTAAAGCGAGATGGACTGCAAGGAGGTATGGAATCAAGCATTGCAAAATTGAGTTGGTTGTTTTGAATTTTGATGAGGTTAATTTTCATGTAAAGAGTTTTGTTAATGGAATTTGGGGAAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0007049 GO:0008150 GO:0009987 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0051321

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

20.39

Weight (kDa)

10.23

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51330 AT5G51330
fragaria_vesca	FvH4_1g24020 FvH4_1g24020 FvH4_7g27150 FvH4_7g27150 FvH4_7g27150 FvH4_7g27150
malus_domestica	MD01G1180700.v1.1 MD07G1251100.v1.1
prunus_persica	Prupe.2G133400_v2.0.a1 Prupe.2G133400_v2.0.a1 Prupe.2G274700_v2.0.a1
pyrus_communis	pycom01g19090
rosa_chinensis	RchiOBHm_Chr1g0373991 RchiOBHm_Chr2g0120161
rosa_laevigata	RLG00000016013 RLG00000018527 RLG00000026788
rosa_multiflora	Rmu_co8084184.1_g000001 Rmu_co8202680.1_g000001 Rmu_co8293435.1_g000001 Rmu_co8298741.1_g000001 Rmu_sc0005304.1_g000004 Rmu_sc0008322.1_g000013 Rmu_sc0015468.1_g000001 Rmu_sc0015469.1_g000002 Rmu_sc0020978.1_g000001 Rmu_sc0020979.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123660 Rroxscaffold_4G00283840 Rroxscaffold_4G00283860
rosa_rugosa	Rorug01G0380000 Rorug01G0380100 Rorug02G0227300
rosa_samantha	Rh1AG390500 Rh1BG354600 Rh1CG367700 Rh1DG385300 Rh2AG283900 Rh2BG295200 Rh2CG272600 Rh2DG044200 Rh2DG308900
rosa_wichuraiana	Rw1G034470 Rw2G003810 Rw2G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	156
AcsI	RAATTY	3 cut(s)	457, 501, 512
AgsI	TTSAA	2 cut(s)	314, 457
AhlI	ACTAGT	1 cut(s)	184
AluBI	AGCT	3 cut(s)	69, 81, 222
AluI	AGCT	3 cut(s)	69, 81, 222
Alw21I	GWGCWC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	87
ApoI	RAATTY	3 cut(s)	457, 501, 512
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	3 cut(s)	87, 163, 375
AsuC2I	CCSGG	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	163, 375
BanII	GRGCYC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	224
BccI	CCATC	3 cut(s)	130, 154, 396
BceAI	ACGGC	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	112
BcuI	ACTAGT	1 cut(s)	184
BfaI	CTAG	2 cut(s)	185, 517
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	2 cut(s)	163, 375
BmgT120I	GGNCC	3 cut(s)	87, 163, 375
BmiI	GGNNCC	1 cut(s)	377
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	112
Bsa29I	ATCGAT	1 cut(s)	100
BsaWI	WCCGGW	2 cut(s)	33, 189
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	430
BseCI	ATCGAT	1 cut(s)	100
BseGI	GGATG	2 cut(s)	78, 165
BseMI	GCAATG	1 cut(s)	430
BseNI	ACTGG	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	89
BshVI	ATCGAT	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	4 cut(s)	34, 90, 112, 190
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	224
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	89
BspDI	ATCGAT	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	78, 165
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	110
BstUI	CGCG	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	89
BsuTUI	ATCGAT	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	78, 165
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	3 cut(s)	87, 163, 375
ClaI	ATCGAT	1 cut(s)	100
CseI	GACGC	2 cut(s)	6, 326
CviAII	CATG	1 cut(s)	479
CviJI	RGCY	7 cut(s)	5, 69, 81, 89, 120, 222, 280
CviKI_1	RGCY	7 cut(s)	5, 69, 81, 89, 120, 222, 280
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	163, 375
Eco53kI	GAGCTC	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	224
FaeI	CATG	1 cut(s)	482
FaiI	YATR	5 cut(s)	207, 288, 369, 420, 480
FatI	CATG	1 cut(s)	478
FauI	CCCGC	1 cut(s)	149
FokI	GGATG	2 cut(s)	85, 172
FriOI	GRGCYC	1 cut(s)	224
FspBI	CTAG	2 cut(s)	185, 517
GlaI	GCGC	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	4 cut(s)	34, 90, 112, 190
HgaI	GACGC	2 cut(s)	6, 326
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	482
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HinfI	GANTC	3 cut(s)	39, 211, 423
HpaII	CCGG	4 cut(s)	34, 90, 112, 190
Hpy188I	TCNGA	5 cut(s)	22, 142, 226, 342, 375
Hpy188III	TCNNGA	1 cut(s)	50
Hpy99I	CGWCG	2 cut(s)	22, 342
HpyAV	CCTTC	2 cut(s)	238, 260
HpyCH4V	TGCA	2 cut(s)	410, 435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
Hsp92II	CATG	1 cut(s)	482
HspAI	GCGC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	7 cut(s)	47, 55, 103, 125, 203, 293, 337
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	185, 517
MaeIII	GTNAC	1 cut(s)	196
MboII	GAAGA	1 cut(s)	310
MfeI	CAATTG	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	6 cut(s)	386, 438, 457, 472, 501, 512
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	2 cut(s)	120, 320
MnlI	CCTC	5 cut(s)	16, 195, 291, 408, 460
MseI	TTAA	3 cut(s)	393, 471, 495
MslI	CAYNNNNRTG	1 cut(s)	127
MspI	CCGG	4 cut(s)	34, 90, 112, 190
MspR9I	CCNGG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	386
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	343
NciI	CCSGG	1 cut(s)	112
NlaIII	CATG	1 cut(s)	482
NlaIV	GGNNCC	1 cut(s)	377
NmeAIII	GCCGAG	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	39, 423
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	377
PspPI	GGNCC	3 cut(s)	87, 163, 375
RseI	CAYNNNNRTG	1 cut(s)	127
SacI	GAGCTC	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	393, 471, 495
Sau96I	GGNCC	3 cut(s)	87, 163, 375
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	9 cut(s)	27, 71, 83, 206, 224, 249, 271, 419, 471
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	2 cut(s)	163, 375
SmiMI	CAYNNNNRTG	1 cut(s)	127
SpeI	ACTAGT	1 cut(s)	184
Sse9I	AATT	6 cut(s)	386, 438, 457, 472, 501, 512
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	2 cut(s)	185, 517
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	110
TaqI	TCGA	2 cut(s)	100, 218
TasI	AATT	6 cut(s)	386, 438, 457, 472, 501, 512
TfiI	GAWTC	2 cut(s)	39, 423
Tru1I	TTAA	3 cut(s)	393, 471, 495
Tru9I	TTAA	3 cut(s)	393, 471, 495
TscAI	CASTG	1 cut(s)	336
TspDTI	ATGAA	3 cut(s)	279, 356, 467
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	336
VpaK11BI	GGWCC	2 cut(s)	163, 375
XapI	RAATTY	3 cut(s)	457, 501, 512
XspI	CTAG	2 cut(s)	185, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.