Amino acid kinase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_plant_repro | PF25874 | 241 - 323 | 8.8e-24 | Winged helix-turn-helix domain in plant reproductive proteins |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1392 |
| AccII | CGCG | 2 cut(s) | 329, 649 |
| AciI | CCGC | 3 cut(s) | 468, 1513, 1657 |
| AclWI | GGATC | 4 cut(s) | 1004, 1017, 1200, 1943 |
| AcoI | YGGCCR | 1 cut(s) | 1556 |
| AcsI | RAATTY | 1 cut(s) | 1130 |
| AcuI | CTGAAG | 3 cut(s) | 1428, 1507, 1724 |
| AcvI | CACGTG | 1 cut(s) | 1566 |
| AcyI | GRCGYC | 1 cut(s) | 409 |
| AfaI | GTAC | 3 cut(s) | 11, 1413, 1982 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 55, 1031, 1035, 1060 |
| AflII | CTTAAG | 1 cut(s) | 764 |
| AflIII | ACRYGT | 3 cut(s) | 647, 1563, 1565 |
| AgsI | TTSAA | 7 cut(s) | 205, 626, 707, 877, 1087, 1280, 2036 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1727 |
| AhlI | ACTAGT | 2 cut(s) | 496, 2024 |
| AjiI | CACGTC | 1 cut(s) | 1724 |
| AjnI | CCWGG | 3 cut(s) | 1029, 1689, 1951 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 28 |
| AleI | CACNNNNGTG | 1 cut(s) | 823 |
| Alw21I | GWGCWC | 5 cut(s) | 43, 536, 817, 949, 1686 |
| Alw26I | GTCTC | 5 cut(s) | 77, 201, 1461, 1578, 1714 |
| AlwI | GGATC | 4 cut(s) | 1004, 1017, 1200, 1943 |
| Ama87I | CYCGRG | 1 cut(s) | 1877 |
| AoxI | GGCC | 5 cut(s) | 399, 831, 1198, 1556, 1920 |
| ApeKI | GCWGC | 5 cut(s) | 641, 746, 1138, 1493, 1510 |
| ApoI | RAATTY | 1 cut(s) | 1130 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1769, 1801 |
| AspLEI | GCGC | 2 cut(s) | 492, 911 |
| AspS9I | GGNCC | 8 cut(s) | 399, 475, 687, 832, 1063, 1198, 1612, 1929 |
| AsuC2I | CCSGG | 3 cut(s) | 424, 835, 903 |
| AsuHPI | GGTGA | 3 cut(s) | 196, 781, 1927 |
| AvaI | CYCGRG | 1 cut(s) | 1877 |
| AvaII | GGWCC | 5 cut(s) | 475, 687, 1063, 1612, 1929 |
| BalI | TGGCCA | 1 cut(s) | 1558 |
| BamHI | GGATCC | 1 cut(s) | 1009 |
| BanII | GRGCYC | 2 cut(s) | 536, 1697 |
| BbrPI | CACGTG | 1 cut(s) | 1566 |
| BbsI | GAAGAC | 2 cut(s) | 638, 1778 |
| Bbv12I | GWGCWC | 5 cut(s) | 43, 536, 817, 949, 1686 |
| BbvI | GCAGC | 5 cut(s) | 653, 758, 1150, 1497, 1505 |
| BccI | CCATC | 7 cut(s) | 95, 255, 442, 565, 717, 935, 1450 |
| BceAI | ACGGC | 2 cut(s) | 295, 422 |
| BciT130I | CCWGG | 3 cut(s) | 1031, 1691, 1953 |
| BcnI | CCSGG | 3 cut(s) | 424, 835, 903 |
| BcoDI | GTCTC | 5 cut(s) | 77, 201, 1461, 1578, 1714 |
| BcuI | ACTAGT | 2 cut(s) | 496, 2024 |
| BfaI | CTAG | 6 cut(s) | 122, 497, 1256, 1343, 1476, 2025 |
| BfoI | RGCGCY | 1 cut(s) | 912 |
| BfrI | CTTAAG | 1 cut(s) | 764 |
| BisI | GCNGC | 6 cut(s) | 469, 642, 747, 1139, 1494, 1511 |
| BlsI | GCNGC | 6 cut(s) | 470, 643, 748, 1140, 1495, 1512 |
| BmcAI | AGTACT | 1 cut(s) | 11 |
| Bme1390I | CCNGG | 6 cut(s) | 424, 835, 903, 1031, 1691, 1953 |
| Bme18I | GGWCC | 5 cut(s) | 475, 687, 1063, 1612, 1929 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1727 |
| BmeT110I | CYCGRG | 1 cut(s) | 1877 |
| BmgBI | CACGTC | 1 cut(s) | 1724 |
| BmgT120I | GGNCC | 8 cut(s) | 399, 475, 687, 832, 1063, 1198, 1612, 1929 |
| BmiI | GGNNCC | 5 cut(s) | 689, 1011, 1065, 1614, 1696 |
| BmrFI | CCNGG | 6 cut(s) | 424, 835, 903, 1031, 1691, 1953 |
| BmrI | ACTGGG | 1 cut(s) | 1777 |
| BmsI | GCATC | 4 cut(s) | 34, 1837, 1912, 2002 |
| BmuI | ACTGGG | 1 cut(s) | 1777 |
| BpiI | GAAGAC | 2 cut(s) | 638, 1778 |
| BpmI | CTGGAG | 1 cut(s) | 983 |
| BpuEI | CTTGAG | 1 cut(s) | 63 |
| BpuMI | CCSGG | 3 cut(s) | 424, 835, 903 |
| BsaAI | YACGTR | 1 cut(s) | 1566 |
| BsaHI | GRCGYC | 1 cut(s) | 409 |
| BsaI | GGTCTC | 1 cut(s) | 77 |
| BsaJI | CCNNGG | 7 cut(s) | 1029, 1030, 1371, 1690, 1878, 1932, 1952 |
| BsaWI | WCCGGW | 3 cut(s) | 345, 501, 684 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 936, 966, 1679, 1709 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 55, 1031, 1035, 1060 |
| Bse1I | ACTGG | 3 cut(s) | 624, 859, 1783 |
| Bse3DI | GCAATG | 2 cut(s) | 1337, 1756 |
| BseBI | CCWGG | 3 cut(s) | 1031, 1691, 1953 |
| BseDI | CCNNGG | 7 cut(s) | 1029, 1030, 1371, 1690, 1878, 1932, 1952 |
| BseGI | GGATG | 3 cut(s) | 96, 580, 1086 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 55, 1031, 1035, 1060 |
| BseMI | GCAATG | 2 cut(s) | 1337, 1756 |
| BseMII | CTCAG | 8 cut(s) | 165, 786, 812, 1073, 1410, 1641, 1707, 1758 |
| BseNI | ACTGG | 3 cut(s) | 624, 859, 1783 |
| BseRI | GAGGAG | 1 cut(s) | 767 |
| BseXI | GCAGC | 5 cut(s) | 653, 758, 1150, 1497, 1505 |
| BseYI | CCCAGC | 2 cut(s) | 887, 998 |
| BsgI | GTGCAG | 1 cut(s) | 1746 |
| Bsh1236I | CGCG | 2 cut(s) | 329, 649 |
| BshFI | GGCC | 5 cut(s) | 401, 833, 1200, 1558, 1922 |
| BsiHKAI | GWGCWC | 5 cut(s) | 43, 536, 817, 949, 1686 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1877 |
| BsiSI | CCGG | 7 cut(s) | 346, 402, 424, 502, 685, 835, 902 |
| BslFI | GGGAC | 4 cut(s) | 863, 1456, 1598, 1771 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 55, 1031, 1035, 1060 |
| BsmAI | GTCTC | 5 cut(s) | 77, 201, 1461, 1578, 1714 |
| BsmBI | CGTCTC | 2 cut(s) | 1578, 1714 |
| BsmFI | GGGAC | 4 cut(s) | 863, 1456, 1598, 1771 |
| BsnI | GGCC | 5 cut(s) | 401, 833, 1200, 1558, 1922 |
| Bso31I | GGTCTC | 1 cut(s) | 77 |
| BsoBI | CYCGRG | 1 cut(s) | 1877 |
| Bsp1286I | GDGCHC | 6 cut(s) | 43, 536, 817, 949, 1686, 1697 |
| Bsp143I | GATC | 4 cut(s) | 913, 1009, 1192, 1948 |
| Bsp19I | CCATGG | 2 cut(s) | 1371, 1932 |
| BspACI | CCGC | 3 cut(s) | 468, 1513, 1657 |
| BspANI | GGCC | 5 cut(s) | 401, 833, 1200, 1558, 1922 |
| BspCNI | CTCAG | 8 cut(s) | 164, 787, 813, 1072, 1409, 1640, 1708, 1759 |
| BspFNI | CGCG | 2 cut(s) | 329, 649 |
| BspHI | TCATGA | 1 cut(s) | 679 |
| BspLI | GGNNCC | 5 cut(s) | 689, 1011, 1065, 1614, 1696 |
| BspPI | GGATC | 4 cut(s) | 1004, 1017, 1200, 1943 |
| BspTI | CTTAAG | 1 cut(s) | 764 |
| BspTNI | GGTCTC | 1 cut(s) | 77 |
| BsrDI | GCAATG | 2 cut(s) | 1337, 1756 |
| BsrI | ACTGG | 3 cut(s) | 624, 859, 1783 |
| BssECI | CCNNGG | 7 cut(s) | 1029, 1030, 1371, 1690, 1878, 1932, 1952 |
| BssMI | GATC | 4 cut(s) | 913, 1009, 1192, 1948 |
| BssNAI | GTATAC | 1 cut(s) | 1393 |
| BssNI | GRCGYC | 1 cut(s) | 409 |
| BssT1I | CCWWGG | 2 cut(s) | 1371, 1932 |
| Bst1107I | GTATAC | 1 cut(s) | 1393 |
| Bst2UI | CCWGG | 3 cut(s) | 1031, 1691, 1953 |
| Bst4CI | ACNGT | 1 cut(s) | 1211 |
| Bst6I | CTCTTC | 5 cut(s) | 150, 605, 1095, 1180, 1642 |
| BstACI | GRCGYC | 1 cut(s) | 409 |
| BstAFI | CTTAAG | 1 cut(s) | 764 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 65 |
| BstBAI | YACGTR | 1 cut(s) | 1566 |
| BstC8I | GCNNGC | 1 cut(s) | 1535 |
| BstDEI | CTNAG | 9 cut(s) | 151, 795, 821, 1059, 1396, 1627, 1716, 1767, 1989 |
| BstDSI | CCRYGG | 2 cut(s) | 1371, 1932 |
| BstF5I | GGATG | 3 cut(s) | 96, 580, 1086 |
| BstFNI | CGCG | 2 cut(s) | 329, 649 |
| BstH2I | RGCGCY | 1 cut(s) | 912 |
| BstHHI | GCGC | 2 cut(s) | 492, 911 |
| BstKTI | GATC | 4 cut(s) | 916, 1012, 1195, 1951 |
| BstMAI | GTCTC | 5 cut(s) | 77, 201, 1461, 1578, 1714 |
| BstMBI | GATC | 4 cut(s) | 913, 1009, 1192, 1948 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 65, 225, 655, 944, 1746 |
| BstNI | CCWGG | 3 cut(s) | 1031, 1691, 1953 |
| BstNSI | RCATGY | 1 cut(s) | 68 |
| BstSCI | CCNGG | 6 cut(s) | 422, 833, 901, 1029, 1689, 1951 |
| BstUI | CGCG | 2 cut(s) | 329, 649 |
| BstV1I | GCAGC | 5 cut(s) | 653, 758, 1150, 1497, 1505 |
| BstV2I | GAAGAC | 2 cut(s) | 638, 1778 |
| BstX2I | RGATCY | 2 cut(s) | 1009, 1948 |
| BstYI | RGATCY | 2 cut(s) | 1009, 1948 |
| BstZ17I | GTATAC | 1 cut(s) | 1393 |
| BsuRI | GGCC | 5 cut(s) | 401, 833, 1200, 1558, 1922 |
| BtgI | CCRYGG | 2 cut(s) | 1371, 1932 |
| BtrI | CACGTC | 1 cut(s) | 1724 |
| BtsCI | GGATG | 3 cut(s) | 96, 580, 1086 |
| BtsIMutI | CAGTG | 4 cut(s) | 219, 818, 852, 1857 |
| Cac8I | GCNNGC | 1 cut(s) | 1535 |
| CciI | TCATGA | 1 cut(s) | 679 |
| CfoI | GCGC | 2 cut(s) | 492, 911 |
| Cfr13I | GGNCC | 8 cut(s) | 399, 475, 687, 832, 1063, 1198, 1612, 1929 |
| CseI | GACGC | 5 cut(s) | 318, 398, 638, 655, 1560 |
| Csp6I | GTAC | 3 cut(s) | 10, 1412, 1981 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1566, 1601 |
| CviQI | GTAC | 3 cut(s) | 10, 1412, 1981 |
| DdeI | CTNAG | 9 cut(s) | 151, 795, 821, 1059, 1396, 1627, 1716, 1767, 1989 |
| DpnI | GATC | 4 cut(s) | 915, 1011, 1194, 1950 |
| DpnII | GATC | 4 cut(s) | 913, 1009, 1192, 1948 |
| DraI | TTTAAA | 2 cut(s) | 132, 1273 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1727 |
| EaeI | YGGCCR | 1 cut(s) | 1556 |
| Eam1104I | CTCTTC | 5 cut(s) | 150, 605, 1095, 1180, 1642 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1727 |
| EarI | CTCTTC | 5 cut(s) | 150, 605, 1095, 1180, 1642 |
| Ecl136II | GAGCTC | 1 cut(s) | 534 |
| Eco130I | CCWWGG | 2 cut(s) | 1371, 1932 |
| Eco24I | GRGCYC | 2 cut(s) | 536, 1697 |
| Eco31I | GGTCTC | 1 cut(s) | 77 |
| Eco47I | GGWCC | 5 cut(s) | 475, 687, 1063, 1612, 1929 |
| Eco53kI | GAGCTC | 1 cut(s) | 534 |
| Eco57I | CTGAAG | 3 cut(s) | 1428, 1507, 1724 |
| Eco72I | CACGTG | 1 cut(s) | 1566 |
| Eco88I | CYCGRG | 1 cut(s) | 1877 |
| EcoICRI | GAGCTC | 1 cut(s) | 534 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1063 |
| EcoRII | CCWGG | 3 cut(s) | 1029, 1689, 1951 |
| EcoT14I | CCWWGG | 2 cut(s) | 1371, 1932 |
| EcoT38I | GRGCYC | 2 cut(s) | 536, 1697 |
| ErhI | CCWWGG | 2 cut(s) | 1371, 1932 |
| Esp3I | CGTCTC | 2 cut(s) | 1578, 1714 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 28 |
| FaqI | GGGAC | 4 cut(s) | 863, 1456, 1598, 1771 |
| FauI | CCCGC | 1 cut(s) | 1664 |
| FauNDI | CATATG | 1 cut(s) | 882 |
| FblI | GTMKAC | 1 cut(s) | 1392 |
| Fnu4HI | GCNGC | 6 cut(s) | 469, 642, 747, 1139, 1494, 1511 |
| FokI | GGATG | 3 cut(s) | 83, 587, 1093 |
| FriOI | GRGCYC | 2 cut(s) | 536, 1697 |
| Fsp4HI | GCNGC | 6 cut(s) | 469, 642, 747, 1139, 1494, 1511 |
| FspBI | CTAG | 6 cut(s) | 122, 497, 1256, 1343, 1476, 2025 |
| GlaI | GCGC | 2 cut(s) | 491, 910 |
| GluI | GCNGC | 6 cut(s) | 469, 642, 747, 1139, 1494, 1511 |
| GsaI | CCCAGC | 2 cut(s) | 891, 1002 |
| GsuI | CTGGAG | 1 cut(s) | 983 |
| HaeII | RGCGCY | 1 cut(s) | 912 |
| HaeIII | GGCC | 5 cut(s) | 401, 833, 1200, 1558, 1922 |
| HapII | CCGG | 7 cut(s) | 346, 402, 424, 502, 685, 835, 902 |
| HgaI | GACGC | 5 cut(s) | 318, 398, 638, 655, 1560 |
| HhaI | GCGC | 2 cut(s) | 492, 911 |
| Hin1I | GRCGYC | 1 cut(s) | 409 |
| Hin6I | GCGC | 2 cut(s) | 490, 909 |
| HinP1I | GCGC | 2 cut(s) | 490, 909 |
| HincII | GTYRAC | 1 cut(s) | 1732 |
| HindII | GTYRAC | 1 cut(s) | 1732 |
| HindIII | AAGCTT | 2 cut(s) | 134, 1203 |
| HpaII | CCGG | 7 cut(s) | 346, 402, 424, 502, 685, 835, 902 |
| HphI | GGTGA | 3 cut(s) | 196, 781, 1927 |
| Hpy166II | GTNNAC | 2 cut(s) | 1393, 1732 |
| Hpy8I | GTNNAC | 2 cut(s) | 1393, 1732 |
| Hpy99I | CGWCG | 5 cut(s) | 302, 334, 414, 649, 654 |
| HpyCH4III | ACNGT | 1 cut(s) | 1211 |
| HpyCH4IV | ACGT | 2 cut(s) | 1565, 1723 |
| HpyCH4V | TGCA | 4 cut(s) | 731, 1533, 1727, 1871 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 65, 225, 655, 944, 1746 |
| HpyF3I | CTNAG | 9 cut(s) | 151, 795, 821, 1059, 1396, 1627, 1716, 1767, 1989 |
| HpySE526I | ACGT | 2 cut(s) | 1565, 1723 |
| Hsp92I | GRCGYC | 1 cut(s) | 409 |
| HspAI | GCGC | 2 cut(s) | 490, 909 |
| Kzo9I | GATC | 4 cut(s) | 913, 1009, 1192, 1948 |
| LmnI | GCTCC | 4 cut(s) | 904, 944, 1700, 1936 |
| Lsp1109I | GCAGC | 5 cut(s) | 653, 758, 1150, 1497, 1505 |
| LweI | GCATC | 4 cut(s) | 34, 1837, 1912, 2002 |
| MaeI | CTAG | 6 cut(s) | 122, 497, 1256, 1343, 1476, 2025 |
| MaeII | ACGT | 2 cut(s) | 1565, 1723 |
| MaeIII | GTNAC | 4 cut(s) | 508, 1216, 1233, 1753 |
| MalI | GATC | 4 cut(s) | 915, 1011, 1194, 1950 |
| MboI | GATC | 4 cut(s) | 913, 1009, 1192, 1948 |
| MfeI | CAATTG | 1 cut(s) | 698 |
| MflI | RGATCY | 2 cut(s) | 1009, 1948 |
| MhlI | GDGCHC | 6 cut(s) | 43, 536, 817, 949, 1686, 1697 |
| MlsI | TGGCCA | 1 cut(s) | 1558 |
| MluCI | AATT | 5 cut(s) | 698, 1130, 1275, 1317, 1872 |
| MluI | ACGCGT | 1 cut(s) | 647 |
| MluNI | TGGCCA | 1 cut(s) | 1558 |
| MlyI | GAGTC | 6 cut(s) | 532, 1015, 1241, 1595, 1790, 1856 |
| MmeI | TCCRAC | 4 cut(s) | 312, 432, 632, 1665 |
| Mox20I | TGGCCA | 1 cut(s) | 1558 |
| MscI | TGGCCA | 1 cut(s) | 1558 |
| MseI | TTAA | 7 cut(s) | 131, 459, 765, 977, 1272, 1821, 1976 |
| MslI | CAYNNNNRTG | 6 cut(s) | 99, 101, 252, 439, 823, 1552 |
| Msp20I | TGGCCA | 1 cut(s) | 1558 |
| MspA1I | CMGCKG | 1 cut(s) | 1406 |
| MspCI | CTTAAG | 1 cut(s) | 764 |
| MspI | CCGG | 7 cut(s) | 346, 402, 424, 502, 685, 835, 902 |
| MspR9I | CCNGG | 6 cut(s) | 424, 835, 903, 1031, 1691, 1953 |
| MunI | CAATTG | 1 cut(s) | 698 |
| MvaI | CCWGG | 3 cut(s) | 1031, 1691, 1953 |
| MvnI | CGCG | 2 cut(s) | 329, 649 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 65, 225, 655, 944, 1746 |
| NciI | CCSGG | 3 cut(s) | 424, 835, 903 |
| NcoI | CCATGG | 2 cut(s) | 1371, 1932 |
| NdeI | CATATG | 1 cut(s) | 882 |
| NdeII | GATC | 4 cut(s) | 913, 1009, 1192, 1948 |
| NlaIV | GGNNCC | 5 cut(s) | 689, 1011, 1065, 1614, 1696 |
| NmeAIII | GCCGAG | 1 cut(s) | 444 |
| NmuCI | GTSAC | 2 cut(s) | 1233, 1753 |
| NspI | RCATGY | 1 cut(s) | 68 |
| OliI | CACNNNNGTG | 1 cut(s) | 823 |
| PagI | TCATGA | 1 cut(s) | 679 |
| PasI | CCCWGGG | 1 cut(s) | 1030 |
| PfeI | GAWTC | 5 cut(s) | 169, 351, 799, 1379, 1460 |
| PflFI | GACNNNGTC | 1 cut(s) | 408 |
| PkrI | GCNGC | 6 cut(s) | 470, 643, 748, 1140, 1495, 1512 |
| PleI | GAGTC | 6 cut(s) | 531, 1015, 1240, 1595, 1790, 1856 |
| PmaCI | CACGTG | 1 cut(s) | 1566 |
| PmlI | CACGTG | 1 cut(s) | 1566 |
| PpsI | GAGTC | 6 cut(s) | 531, 1015, 1240, 1595, 1790, 1856 |
| Ppu21I | YACGTR | 1 cut(s) | 1566 |
| PpuMI | RGGWCCY | 1 cut(s) | 1063 |
| Psp124BI | GAGCTC | 1 cut(s) | 536 |
| Psp5II | RGGWCCY | 1 cut(s) | 1063 |
| Psp6I | CCWGG | 3 cut(s) | 1029, 1689, 1951 |
| PspCI | CACGTG | 1 cut(s) | 1566 |
| PspFI | CCCAGC | 2 cut(s) | 887, 998 |
| PspGI | CCWGG | 3 cut(s) | 1029, 1689, 1951 |
| PspN4I | GGNNCC | 5 cut(s) | 689, 1011, 1065, 1614, 1696 |
| PspPI | GGNCC | 8 cut(s) | 399, 475, 687, 832, 1063, 1198, 1612, 1929 |
| PspPPI | RGGWCCY | 1 cut(s) | 1063 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1275, 1307 |
| PsuI | RGATCY | 2 cut(s) | 1009, 1948 |
| PsyI | GACNNNGTC | 1 cut(s) | 408 |
| PvuII | CAGCTG | 1 cut(s) | 1406 |
| RsaI | GTAC | 3 cut(s) | 11, 1413, 1982 |
| RsaNI | GTAC | 3 cut(s) | 10, 1412, 1981 |
| RseI | CAYNNNNRTG | 6 cut(s) | 99, 101, 252, 439, 823, 1552 |
| SacI | GAGCTC | 1 cut(s) | 536 |
| SaqAI | TTAA | 7 cut(s) | 131, 459, 765, 977, 1272, 1821, 1976 |
| SatI | GCNGC | 6 cut(s) | 469, 642, 747, 1139, 1494, 1511 |
| Sau3AI | GATC | 4 cut(s) | 913, 1009, 1192, 1948 |
| Sau96I | GGNCC | 8 cut(s) | 399, 475, 687, 832, 1063, 1198, 1612, 1929 |
| ScaI | AGTACT | 1 cut(s) | 11 |
| SchI | GAGTC | 6 cut(s) | 532, 1015, 1241, 1595, 1790, 1856 |
| ScrFI | CCNGG | 6 cut(s) | 424, 835, 903, 1031, 1691, 1953 |
| SduI | GDGCHC | 6 cut(s) | 43, 536, 817, 949, 1686, 1697 |
| SfaNI | GCATC | 4 cut(s) | 34, 1837, 1912, 2002 |
| SinI | GGWCC | 5 cut(s) | 475, 687, 1063, 1612, 1929 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 99, 101, 252, 439, 823, 1552 |
| SmlI | CTYRAG | 2 cut(s) | 78, 764 |
| SmoI | CTYRAG | 2 cut(s) | 78, 764 |
| SpeI | ACTAGT | 2 cut(s) | 496, 2024 |
| Sse9I | AATT | 5 cut(s) | 698, 1130, 1275, 1317, 1872 |
| SsiI | CCGC | 3 cut(s) | 468, 1513, 1657 |
| SspMI | CTAG | 6 cut(s) | 122, 497, 1256, 1343, 1476, 2025 |
| SstI | GAGCTC | 1 cut(s) | 536 |
| StyD4I | CCNGG | 6 cut(s) | 422, 833, 901, 1029, 1689, 1951 |
| StyI | CCWWGG | 2 cut(s) | 1371, 1932 |
| TaaI | ACNGT | 1 cut(s) | 1211 |
| TaiI | ACGT | 2 cut(s) | 1568, 1726 |
| TaqI | TCGA | 5 cut(s) | 90, 167, 297, 530, 1225 |
| TasI | AATT | 5 cut(s) | 698, 1130, 1275, 1317, 1872 |
| TatI | WGTACW | 1 cut(s) | 9 |
| TauI | GCSGC | 1 cut(s) | 471 |
| TfiI | GAWTC | 5 cut(s) | 169, 351, 799, 1379, 1460 |
| Tru1I | TTAA | 7 cut(s) | 131, 459, 765, 977, 1272, 1821, 1976 |
| Tru9I | TTAA | 7 cut(s) | 131, 459, 765, 977, 1272, 1821, 1976 |
| TscAI | CASTG | 4 cut(s) | 219, 825, 859, 1864 |
| TseFI | GTSAC | 2 cut(s) | 1233, 1753 |
| TseI | GCWGC | 5 cut(s) | 641, 746, 1138, 1493, 1510 |
| Tsp45I | GTSAC | 2 cut(s) | 1233, 1753 |
| TspDTI | ATGAA | 9 cut(s) | 17, 99, 132, 176, 591, 668, 788, 1346, 1658 |
| TspGWI | ACGGA | 3 cut(s) | 429, 581, 823 |
| TspRI | CASTG | 4 cut(s) | 219, 825, 859, 1864 |
| Tth111I | GACNNNGTC | 1 cut(s) | 408 |
| Vha464I | CTTAAG | 1 cut(s) | 764 |
| VpaK11BI | GGWCC | 5 cut(s) | 475, 687, 1063, 1612, 1929 |
| XapI | RAATTY | 1 cut(s) | 1130 |
| XceI | RCATGY | 1 cut(s) | 68 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1032, 1930 |
| XmiI | GTMKAC | 1 cut(s) | 1392 |
| XspI | CTAG | 6 cut(s) | 122, 497, 1256, 1343, 1476, 2025 |
| ZrmI | AGTACT | 1 cut(s) | 11 |