Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001779

Physical Location & Seq

Genomic Coordinates Reverse (-)

19123027 .. 19125128

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G133400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAACCTTTGGAGTAGGAAGAGGAAGCGCCAAGATCACCATAGAAAGCCCAAGAAAACCACAAAGAAATCAAAATCTATAACAAAACGTCAAAAGCAGAATCAAGTTGTAGCAGTTCCCGATCGGAGTAACAAGAAATTGGTAAAACACACAGTGGCAATATGGTCTGCAGGGAGGTACAAGGCTGCAGAGGAAAACATGCTGAGGGTGATGAAGGCCAAGGGTGCTAAATTTGGGAGCCCAATACTGAGGCCAGCGCTGAGGTCTGAGGCAAGGAAGCTGATTGGGGATACGGGTTTGTTGGACCATTTGCTCAAACACATGGCGGGCAAGGTGGTGCCAGGTGGAGCCGAGAGGTTTATGCGGCGCCACAATGCAGATGGAGCCATGGAGTATTGGCTGGAGAGATTCATGAGCTCAGGGAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0007049 GO:0008150 GO:0009987 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0051321

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.47

Weight (kDa)

11.36

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51330 AT5G51330
fragaria_vesca	FvH4_1g24020 FvH4_1g24020 FvH4_7g27150 FvH4_7g27150 FvH4_7g27150 FvH4_7g27150
malus_domestica	MD01G1180700.v1.1 MD07G1251100.v1.1
prunus_persica	Prupe.2G133400_v2.0.a1 Prupe.2G133400_v2.0.a1 Prupe.2G274700_v2.0.a1
pyrus_communis	pycom01g19090
rosa_chinensis	RchiOBHm_Chr1g0373991 RchiOBHm_Chr2g0120161
rosa_laevigata	RLG00000016013 RLG00000018527 RLG00000026788
rosa_multiflora	Rmu_co8084184.1_g000001 Rmu_co8202680.1_g000001 Rmu_co8293435.1_g000001 Rmu_co8298741.1_g000001 Rmu_sc0005304.1_g000004 Rmu_sc0008322.1_g000013 Rmu_sc0015468.1_g000001 Rmu_sc0015469.1_g000002 Rmu_sc0020978.1_g000001 Rmu_sc0020979.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123660 Rroxscaffold_4G00283840 Rroxscaffold_4G00283860
rosa_rugosa	Rorug01G0380000 Rorug01G0380100 Rorug02G0227300
rosa_samantha	Rh1AG390500 Rh1BG354600 Rh1CG367700 Rh1DG385300 Rh2AG283900 Rh2BG295200 Rh2CG272600 Rh2DG044200 Rh2DG308900
rosa_wichuraiana	Rw1G034470 Rw2G003810 Rw2G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	337, 366
AciI	CCGC	2 cut(s)	326, 364
AcsI	RAATTY	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	367
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	179
AfeI	AGCGCT	1 cut(s)	258
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	2 cut(s)	280, 417
AluI	AGCT	2 cut(s)	280, 417
Alw21I	GWGCWC	1 cut(s)	419
Aor51HI	AGCGCT	1 cut(s)	258
AoxI	GGCC	2 cut(s)	216, 251
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	230
AspLEI	GCGC	3 cut(s)	30, 259, 369
AspS9I	GGNCC	1 cut(s)	304
AsuHPI	GGTGA	2 cut(s)	29, 220
AvaII	GGWCC	1 cut(s)	304
BanI	GGYRCC	2 cut(s)	337, 366
BanII	GRGCYC	2 cut(s)	242, 419
Bbv12I	GWGCWC	1 cut(s)	419
BbvCI	CCTCAGC	2 cut(s)	203, 260
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	374
BciT130I	CCWGG	1 cut(s)	342
BciVI	GTATCC	1 cut(s)	283
BfmI	CTRYAG	2 cut(s)	168, 186
BfoI	RGCGCY	3 cut(s)	31, 260, 370
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	2 cut(s)	186, 365
BlsI	GCNGC	2 cut(s)	187, 366
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	5 cut(s)	239, 339, 349, 368, 385
BmrFI	CCNGG	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	422
Bpu10I	CCTNAGC	3 cut(s)	203, 260, 418
BsaHI	GRCGYC	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	219, 387
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	219, 387
BseMII	CTCAG	5 cut(s)	194, 239, 251, 258, 432
BseXI	GCAGC	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	218, 253
BshNI	GGYRCC	2 cut(s)	337, 366
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	218, 253
Bsp1286I	GDGCHC	2 cut(s)	242, 419
Bsp143I	GATC	2 cut(s)	34, 121
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	2 cut(s)	326, 364
BspANI	GGCC	2 cut(s)	218, 253
BspCNI	CTCAG	5 cut(s)	195, 240, 252, 259, 431
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	5 cut(s)	239, 339, 349, 368, 385
BspMAI	CTGCAG	2 cut(s)	172, 190
BspT107I	GGYRCC	2 cut(s)	337, 366
BssECI	CCNNGG	2 cut(s)	219, 387
BssMI	GATC	2 cut(s)	34, 121
BssNI	GRCGYC	1 cut(s)	367
BssT1I	CCWWGG	2 cut(s)	219, 387
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	2 cut(s)	14, 419
BstACI	GRCGYC	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	255, 328
BstDEI	CTNAG	5 cut(s)	203, 248, 260, 267, 418
BstDSI	CCRYGG	1 cut(s)	387
BstH2I	RGCGCY	3 cut(s)	31, 260, 370
BstHHI	GCGC	3 cut(s)	30, 259, 369
BstKTI	GATC	2 cut(s)	37, 124
BstMBI	GATC	2 cut(s)	34, 121
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 383
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	2 cut(s)	168, 186
BstV1I	GCAGC	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	218, 253
BtgI	CCRYGG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	255, 328
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	3 cut(s)	30, 259, 369
Cfr13I	GGNCC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	4 cut(s)	199, 322, 388, 412
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	5 cut(s)	203, 248, 260, 267, 418
DinI	GGCGCC	1 cut(s)	368
DpnI	GATC	2 cut(s)	36, 123
DpnII	GATC	2 cut(s)	34, 121
DraIII	CACNNNGTG	1 cut(s)	154
Eam1104I	CTCTTC	2 cut(s)	14, 419
EarI	CTCTTC	2 cut(s)	14, 419
Ecl136II	GAGCTC	1 cut(s)	417
Eco130I	CCWWGG	2 cut(s)	219, 387
Eco24I	GRGCYC	2 cut(s)	242, 419
Eco47I	GGWCC	1 cut(s)	304
Eco47III	AGCGCT	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	417
EcoICRI	GAGCTC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	2 cut(s)	219, 387
EcoT38I	GRGCYC	2 cut(s)	242, 419
EgeI	GGCGCC	1 cut(s)	368
EheI	GGCGCC	1 cut(s)	368
ErhI	CCWWGG	2 cut(s)	219, 387
FaeI	CATG	4 cut(s)	202, 325, 391, 415
FaiI	YATR	8 cut(s)	42, 80, 163, 200, 323, 362, 389, 413
FatI	CATG	4 cut(s)	198, 321, 387, 411
FauI	CCCGC	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	186, 365
FriOI	GRGCYC	2 cut(s)	242, 419
Fsp4HI	GCNGC	2 cut(s)	186, 365
GlaI	GCGC	3 cut(s)	29, 258, 368
GluI	GCNGC	2 cut(s)	186, 365
GsuI	CTGGAG	1 cut(s)	422
HaeII	RGCGCY	3 cut(s)	31, 260, 370
HaeIII	GGCC	2 cut(s)	218, 253
HhaI	GCGC	3 cut(s)	30, 259, 369
Hin1I	GRCGYC	1 cut(s)	367
Hin1II	CATG	4 cut(s)	202, 325, 391, 415
Hin6I	GCGC	3 cut(s)	28, 257, 367
HinP1I	GCGC	3 cut(s)	28, 257, 367
HinfI	GANTC	2 cut(s)	100, 408
HphI	GGTGA	2 cut(s)	29, 220
Hpy188I	TCNGA	2 cut(s)	126, 268
Hpy188III	TCNNGA	2 cut(s)	119, 412
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	3 cut(s)	170, 188, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 383
HpyF3I	CTNAG	5 cut(s)	203, 248, 260, 267, 418
HpySE526I	ACGT	1 cut(s)	88
Hsp92I	GRCGYC	1 cut(s)	367
Hsp92II	CATG	4 cut(s)	202, 325, 391, 415
HspAI	GCGC	3 cut(s)	28, 257, 367
KasI	GGCGCC	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	34, 121
LmnI	GCTCC	3 cut(s)	237, 347, 383
LpnPI	CCDG	6 cut(s)	156, 267, 327, 354, 386, 405
Lsp1109I	GCAGC	1 cut(s)	172
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	36, 123
MboI	GATC	2 cut(s)	34, 121
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	242, 419
MluCI	AATT	2 cut(s)	137, 230
Mly113I	GGCGCC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	8 cut(s)	15, 168, 184, 198, 243, 255, 262, 348
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	224, 383
NarI	GGCGCC	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	2 cut(s)	34, 121
NlaIII	CATG	4 cut(s)	202, 325, 391, 415
NlaIV	GGNNCC	5 cut(s)	239, 339, 349, 368, 385
NmeAIII	GCCGAG	1 cut(s)	376
NspI	RCATGY	1 cut(s)	202
PagI	TCATGA	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	100, 408
PkrI	GCNGC	2 cut(s)	187, 366
Ple19I	CGATCG	1 cut(s)	124
PluTI	GGCGCC	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	5 cut(s)	239, 339, 349, 368, 385
PspPI	GGNCC	1 cut(s)	304
PstI	CTGCAG	2 cut(s)	172, 190
PvuI	CGATCG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	419
SatI	GCNGC	2 cut(s)	186, 365
Sau3AI	GATC	2 cut(s)	34, 121
Sau96I	GGNCC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	2 cut(s)	242, 419
SetI	ASST	9 cut(s)	9, 91, 179, 266, 282, 336, 346, 359, 419
SfcI	CTRYAG	2 cut(s)	168, 186
SfoI	GGCGCC	1 cut(s)	368
SinI	GGWCC	1 cut(s)	304
Sse9I	AATT	2 cut(s)	137, 230
SsiI	CCGC	2 cut(s)	326, 364
SspDI	GGCGCC	1 cut(s)	366
SstI	GAGCTC	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	2 cut(s)	219, 387
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	91
TasI	AATT	2 cut(s)	137, 230
TauI	GCSGC	1 cut(s)	367
TfiI	GAWTC	2 cut(s)	100, 408
TscAI	CASTG	1 cut(s)	159
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	3 cut(s)	17, 227, 400
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.