Rorug01G0380100

Amino acid kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001779
Physical Location & Seq
Forward (+)
49285745 .. 49287113
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0380100.1

Sequence Viewer

Length: 537 bp
ATGCTTTCTGATCCTTCTGATAGGAATCGAATCCTCAGGAGGGGACCATGGGGATTTGATCGTTCTCGTCTGGTGTTGGCTCCATTTGACGGGGTCGGCGCCATAAAGGATGTTCCTTTGACTACTCTGGCATTCTGGATCAAAGTTCATGGCCTCCCGGTGGATTTCCATACTAACTGGTGCCTTCGATGGATCGGAAGTGCGTTGGGAAGGTTTCTGCAAAAGGAAACAATGGGGTTGGACGCAGGAAGGGTCCGGATTAGAGTGGAGATGGATTTGACGCAACATGTGATCTTCCAACGTAGTTTTACAGTGGATGATGGTGTTGATGTAGATCTAGACTTCTTCTTTGAGAATCTATGTGGCCGCTGCAGGGATTGTGGGTTGTTGACACATGTAGGGCTTCCTTGTTCTGGGCCACTGTTGTCGGAATTTTTCCAGGGTGCGACGACGCCAGCGCGGCTTAACTTGGAGCGAGTTCTGAATAGGGTGGTGTTTTGTTGGGAAGAGTTTGGTCTTTGGTATGCAGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
AA_kinase

Protein Analysis

178

Amino Acids

20.32

Weight (kDa)

6.89

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 98, 180
AccII CGCG 1 cut(s) 460
AccIII TCCGGA 1 cut(s) 255
AciI CCGC 2 cut(s) 367, 460
AclWI GGATC 3 cut(s) 5, 146, 200
AcoI YGGCCR 1 cut(s) 364
AcsI RAATTY 1 cut(s) 431
AcyI GRCGYC 2 cut(s) 99, 452
AfiI CCNNNNNNNGG 5 cut(s) 40, 89, 160, 373, 413
AflIII ACRYGT 2 cut(s) 286, 394
AjnI CCWGG 1 cut(s) 438
AlwI GGATC 3 cut(s) 5, 146, 200
Aor13HI TCCGGA 1 cut(s) 255
AoxI GGCC 3 cut(s) 151, 364, 416
ApeKI GCWGC 1 cut(s) 369
ApoI RAATTY 1 cut(s) 431
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 2 cut(s) 101, 460
AspS9I GGNCC 3 cut(s) 44, 253, 416
AsuC2I CCSGG 1 cut(s) 158
AvaII GGWCC 2 cut(s) 44, 253
AxyI CCTNAGG 1 cut(s) 35
BanI GGYRCC 2 cut(s) 98, 180
BbvI GCAGC 1 cut(s) 356
BccI CCATC 3 cut(s) 183, 265, 314
BciT130I CCWGG 1 cut(s) 440
BcnI CCSGG 1 cut(s) 158
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 370
BfoI RGCGCY 1 cut(s) 102
BglI GCCNNNNNGGC 1 cut(s) 460
BglII AGATCT 1 cut(s) 334
BisI GCNGC 3 cut(s) 367, 370, 461
BlsI GCNGC 3 cut(s) 368, 371, 462
Bme1390I CCNGG 2 cut(s) 158, 440
Bme18I GGWCC 2 cut(s) 44, 253
BmgT120I GGNCC 3 cut(s) 44, 253, 416
BmiI GGNNCC 5 cut(s) 45, 81, 100, 182, 254
BmrFI CCNGG 2 cut(s) 158, 440
BpuMI CCSGG 1 cut(s) 158
BsaBI GATNNNNATC 2 cut(s) 24, 333
BsaHI GRCGYC 2 cut(s) 99, 452
BsaJI CCNNGG 2 cut(s) 47, 439
BsaWI WCCGGW 1 cut(s) 255
Bsc4I CCNNNNNNNGG 5 cut(s) 40, 89, 160, 373, 413
Bse1I ACTGG 1 cut(s) 182
Bse21I CCTNAGG 1 cut(s) 35
Bse8I GATNNNNATC 2 cut(s) 24, 333
BseAI TCCGGA 1 cut(s) 255
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 2 cut(s) 47, 439
BseGI GGATG 2 cut(s) 115, 322
BseJI GATNNNNATC 2 cut(s) 24, 333
BseLI CCNNNNNNNGG 5 cut(s) 40, 89, 160, 373, 413
BseMII CTCAG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 356
Bsh1236I CGCG 1 cut(s) 460
BshFI GGCC 3 cut(s) 153, 366, 418
BshNI GGYRCC 2 cut(s) 98, 180
BsiSI CCGG 2 cut(s) 158, 256
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 5 cut(s) 40, 89, 160, 373, 413
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 131
BsnI GGCC 3 cut(s) 153, 366, 418
Bsp13I TCCGGA 1 cut(s) 255
Bsp143I GATC 6 cut(s) 10, 58, 138, 192, 291, 334
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 2 cut(s) 367, 460
BspANI GGCC 3 cut(s) 153, 366, 418
BspCNI CTCAG 1 cut(s) 48
BspEI TCCGGA 1 cut(s) 255
BspFNI CGCG 1 cut(s) 460
BspLI GGNNCC 5 cut(s) 45, 81, 100, 182, 254
BspMAI CTGCAG 1 cut(s) 374
BspPI GGATC 3 cut(s) 5, 146, 200
BspT107I GGYRCC 2 cut(s) 98, 180
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 2 cut(s) 47, 439
BssMI GATC 6 cut(s) 10, 58, 138, 192, 291, 334
BssNI GRCGYC 2 cut(s) 99, 452
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 2 cut(s) 313, 423
Bst6I CTCTTC 1 cut(s) 501
BstACI GRCGYC 2 cut(s) 99, 452
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 115, 322
BstFNI CGCG 1 cut(s) 460
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 2 cut(s) 101, 460
BstKTI GATC 6 cut(s) 13, 61, 141, 195, 294, 337
BstMBI GATC 6 cut(s) 10, 58, 138, 192, 291, 334
BstMWI GCNNNNNNNGC 1 cut(s) 460
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 2 cut(s) 290, 398
BstSCI CCNGG 2 cut(s) 156, 438
BstSFI CTRYAG 1 cut(s) 370
BstUI CGCG 1 cut(s) 460
BstV1I GCAGC 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
Bsu36I CCTNAGG 1 cut(s) 35
BsuRI GGCC 3 cut(s) 153, 366, 418
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 115, 322
BtsIMutI CAGTG 2 cut(s) 318, 419
Cac8I GCNNGC 1 cut(s) 456
CfoI GCGC 2 cut(s) 101, 460
Cfr13I GGNCC 3 cut(s) 44, 253, 416
CseI GACGC 3 cut(s) 251, 289, 460
CviAII CATG 4 cut(s) 48, 149, 287, 395
CviJI RGCY 6 cut(s) 80, 153, 366, 403, 418, 463
CviKI_1 RGCY 6 cut(s) 80, 153, 366, 403, 418, 463
DdeI CTNAG 1 cut(s) 35
DinI GGCGCC 1 cut(s) 100
DpnI GATC 6 cut(s) 12, 60, 140, 194, 293, 336
DpnII GATC 6 cut(s) 10, 58, 138, 192, 291, 334
EaeI YGGCCR 1 cut(s) 364
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 44, 253
Eco81I CCTNAGG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 47
EgeI GGCGCC 1 cut(s) 100
EheI GGCGCC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 4 cut(s) 51, 152, 290, 398
FaiI YATR 8 cut(s) 49, 104, 150, 171, 288, 361, 396, 525
FaqI GGGAC 1 cut(s) 57
FatI CATG 4 cut(s) 47, 148, 286, 394
Fnu4HI GCNGC 3 cut(s) 367, 370, 461
FokI GGATG 2 cut(s) 122, 329
Fsp4HI GCNGC 3 cut(s) 367, 370, 461
FspBI CTAG 1 cut(s) 338
GlaI GCGC 2 cut(s) 100, 459
GluI GCNGC 3 cut(s) 367, 370, 461
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 3 cut(s) 153, 366, 418
HapII CCGG 2 cut(s) 158, 256
HgaI GACGC 3 cut(s) 251, 289, 460
HhaI GCGC 2 cut(s) 101, 460
Hin1I GRCGYC 2 cut(s) 99, 452
Hin1II CATG 4 cut(s) 51, 152, 290, 398
Hin6I GCGC 2 cut(s) 99, 458
HinP1I GCGC 2 cut(s) 99, 458
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 3 cut(s) 25, 30, 355
HpaII CCGG 2 cut(s) 158, 256
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 5 cut(s) 10, 19, 197, 430, 483
Hpy188III TCNNGA 4 cut(s) 37, 136, 256, 338
Hpy8I GTNNAC 1 cut(s) 390
Hpy99I CGWCG 2 cut(s) 451, 454
HpyAV CCTTC 5 cut(s) 24, 194, 204, 243, 525
HpyCH4III ACNGT 2 cut(s) 313, 423
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 3 cut(s) 220, 372, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 460
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 301
Hsp92I GRCGYC 2 cut(s) 99, 452
Hsp92II CATG 4 cut(s) 51, 152, 290, 398
HspAI GCGC 2 cut(s) 99, 458
KasI GGCGCC 1 cut(s) 98
Kpn2I TCCGGA 1 cut(s) 255
Kzo9I GATC 6 cut(s) 10, 58, 138, 192, 291, 334
LmnI GCTCC 2 cut(s) 85, 472
Lsp1109I GCAGC 1 cut(s) 356
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 301
MalI GATC 6 cut(s) 12, 60, 140, 194, 293, 336
MboI GATC 6 cut(s) 10, 58, 138, 192, 291, 334
MboII GAAGA 3 cut(s) 286, 337, 518
MflI RGATCY 1 cut(s) 334
MluCI AATT 1 cut(s) 431
Mly113I GGCGCC 1 cut(s) 99
MmeI TCCRAC 3 cut(s) 219, 322, 408
MnlI CCTC 3 cut(s) 33, 44, 164
MroI TCCGGA 1 cut(s) 255
MseI TTAA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 369
MspI CCGG 2 cut(s) 158, 256
MspR9I CCNGG 2 cut(s) 158, 440
Mva1269I GAATGC 1 cut(s) 131
MvaI CCWGG 1 cut(s) 440
MvnI CGCG 1 cut(s) 460
MwoI GCNNNNNNNGC 1 cut(s) 460
NarI GGCGCC 1 cut(s) 99
NciI CCSGG 1 cut(s) 158
NcoI CCATGG 1 cut(s) 47
NdeII GATC 6 cut(s) 10, 58, 138, 192, 291, 334
NlaIII CATG 4 cut(s) 51, 152, 290, 398
NlaIV GGNNCC 5 cut(s) 45, 81, 100, 182, 254
NspI RCATGY 2 cut(s) 290, 398
PciI ACATGT 2 cut(s) 286, 394
PctI GAATGC 1 cut(s) 131
PfeI GAWTC 3 cut(s) 25, 30, 355
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 3 cut(s) 368, 371, 462
PluTI GGCGCC 1 cut(s) 102
PscI ACATGT 2 cut(s) 286, 394
Psp6I CCWGG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 5 cut(s) 45, 81, 100, 182, 254
PspPI GGNCC 3 cut(s) 44, 253, 416
PstI CTGCAG 1 cut(s) 374
PsuI RGATCY 1 cut(s) 334
PsyI GACNNNGTC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 3 cut(s) 367, 370, 461
Sau3AI GATC 6 cut(s) 10, 58, 138, 192, 291, 334
Sau96I GGNCC 3 cut(s) 44, 253, 416
ScrFI CCNGG 2 cut(s) 158, 440
SetI ASST 3 cut(s) 215, 304, 536
SfcI CTRYAG 1 cut(s) 370
SfoI GGCGCC 1 cut(s) 100
SinI GGWCC 2 cut(s) 44, 253
Sse9I AATT 1 cut(s) 431
SsiI CCGC 2 cut(s) 367, 460
SspDI GGCGCC 1 cut(s) 98
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 156, 438
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 313, 423
TaiI ACGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 28, 187
TasI AATT 1 cut(s) 431
TauI GCSGC 2 cut(s) 369, 463
TfiI GAWTC 3 cut(s) 25, 30, 355
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 2 cut(s) 318, 426
TseI GCWGC 1 cut(s) 369
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 2 cut(s) 318, 426
Tth111I GACNNNGTC 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 44, 253
XapI RAATTY 1 cut(s) 431
XbaI TCTAGA 1 cut(s) 337
XceI RCATGY 2 cut(s) 290, 398
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.