Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8293435.1

Orthogroup ID

OG0001779

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 876

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8293435.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

gtgaatggaaagtctctgttcaaggtttcagtgagctttccaagccttcactctctccaaacccatctgaatgaggaaagctaccaaaacccagacggcttccttcctgctttcgacgaaaactactctatggctccacaaatcgcgtcggaggtgctttaccggagaatcccacatcacgaaatagcagagcagagcatgatgtggagtttttgggccggacggcgtcgtttcgctacccggaaaagcccatctccgtgttgcttgtcggagattaagctcggcggcatggtccaatggggtaagcgcaaactagtccggtgcgttacgaggcatgagagtctgtcgagctctgaccaagaacaaccagagaaggaagaaacggagatggatgaagatgtgaaagagcctcgctatgagtttaggaagagaaaactggttcaaaagaagaccaaagcagcgaagcgtcggaagcagaacaatcaaatagtggttcatgaccggacccagaatcaattggttgaagcctcaatagagagatggactgcaaggaggtataaggcagcagaggagaacatacttaaggtgatgaaggcaaaaggtgtttgtgctgagaatccaatacggagagcaccactgaggtgtgaggcccggaagttgattggggacactggtttgatagaccatttgttgaagcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0007049 GO:0008150 GO:0009987 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0051321

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

27.11

Weight (kDa)

9.64

Isoelectric Point (pI)

58.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51330 AT5G51330
fragaria_vesca	FvH4_1g24020 FvH4_1g24020 FvH4_7g27150 FvH4_7g27150 FvH4_7g27150 FvH4_7g27150
malus_domestica	MD01G1180700.v1.1 MD07G1251100.v1.1
prunus_persica	Prupe.2G133400_v2.0.a1 Prupe.2G133400_v2.0.a1 Prupe.2G274700_v2.0.a1
pyrus_communis	pycom01g19090
rosa_chinensis	RchiOBHm_Chr1g0373991 RchiOBHm_Chr2g0120161
rosa_laevigata	RLG00000016013 RLG00000018527 RLG00000026788
rosa_multiflora	Rmu_co8084184.1_g000001 Rmu_co8202680.1_g000001 Rmu_co8293435.1_g000001 Rmu_co8298741.1_g000001 Rmu_sc0005304.1_g000004 Rmu_sc0008322.1_g000013 Rmu_sc0015468.1_g000001 Rmu_sc0015469.1_g000002 Rmu_sc0020978.1_g000001 Rmu_sc0020979.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123660 Rroxscaffold_4G00283840 Rroxscaffold_4G00283860
rosa_rugosa	Rorug01G0380000 Rorug01G0380100 Rorug02G0227300
rosa_samantha	Rh1AG390500 Rh1BG354600 Rh1CG367700 Rh1DG385300 Rh2AG283900 Rh2BG295200 Rh2CG272600 Rh2DG044200 Rh2DG308900
rosa_wichuraiana	Rw1G034470 Rw2G003810 Rw2G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AciI	CCGC	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	226
AflII	CTTAAG	1 cut(s)	581
AgsI	TTSAA	4 cut(s)	22, 443, 524, 694
AhlI	ACTAGT	1 cut(s)	313
AleI	CACNNNNGTG	1 cut(s)	640
AluBI	AGCT	4 cut(s)	36, 81, 280, 351
AluI	AGCT	4 cut(s)	36, 81, 280, 351
Alw21I	GWGCWC	2 cut(s)	353, 634
Alw26I	GTCTC	1 cut(s)	18
AoxI	GGCC	2 cut(s)	216, 648
ApeKI	GCWGC	2 cut(s)	458, 563
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	4 cut(s)	216, 292, 504, 649
AsuC2I	CCSGG	2 cut(s)	241, 652
AsuHPI	GGTGA	1 cut(s)	598
AvaII	GGWCC	2 cut(s)	292, 504
BanII	GRGCYC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	2 cut(s)	353, 634
BbvI	GCAGC	2 cut(s)	470, 575
BccI	CCATC	4 cut(s)	72, 259, 382, 534
BceAI	ACGGC	2 cut(s)	112, 239
BcnI	CCSGG	2 cut(s)	241, 652
BcoDI	GTCTC	1 cut(s)	18
BcuI	ACTAGT	1 cut(s)	313
BfaI	CTAG	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	581
BisI	GCNGC	3 cut(s)	286, 459, 564
BlsI	GCNGC	3 cut(s)	287, 460, 565
Bme1390I	CCNGG	2 cut(s)	241, 652
Bme18I	GGWCC	2 cut(s)	292, 504
BmgT120I	GGNCC	4 cut(s)	216, 292, 504, 649
BmiI	GGNNCC	2 cut(s)	135, 506
BmrFI	CCNGG	2 cut(s)	241, 652
BpiI	GAAGAC	1 cut(s)	455
BpuMI	CCSGG	2 cut(s)	241, 652
BsaHI	GRCGYC	1 cut(s)	226
BsaWI	WCCGGW	3 cut(s)	162, 318, 501
Bse1I	ACTGG	2 cut(s)	441, 676
BseGI	GGATG	1 cut(s)	397
BseMII	CTCAG	2 cut(s)	603, 629
BseNI	ACTGG	2 cut(s)	441, 676
BseRI	GAGGAG	1 cut(s)	584
BseXI	GCAGC	2 cut(s)	470, 575
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	218, 650
BsiHKAI	GWGCWC	2 cut(s)	353, 634
BsiSI	CCGG	6 cut(s)	163, 219, 241, 319, 502, 652
BslFI	GGGAC	1 cut(s)	680
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	680
BsnI	GGCC	2 cut(s)	218, 650
Bsp1286I	GDGCHC	2 cut(s)	353, 634
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	2 cut(s)	218, 650
BspCNI	CTCAG	2 cut(s)	604, 630
BspFNI	CGCG	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	135, 506
BspTI	CTTAAG	1 cut(s)	581
BsrI	ACTGG	2 cut(s)	441, 676
BssNI	GRCGYC	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	422
BstACI	GRCGYC	1 cut(s)	226
BstAFI	CTTAAG	1 cut(s)	581
BstDEI	CTNAG	2 cut(s)	612, 638
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	309
BstMAI	GTCTC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 472
BstSCI	CCNGG	2 cut(s)	239, 650
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	470, 575
BstV2I	GAAGAC	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	218, 650
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	3 cut(s)	36, 635, 669
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	4 cut(s)	216, 292, 504, 649
CseI	GACGC	3 cut(s)	135, 215, 455
CviAII	CATG	4 cut(s)	199, 289, 335, 497
DdeI	CTNAG	2 cut(s)	612, 638
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Ecl136II	GAGCTC	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	353
Eco47I	GGWCC	2 cut(s)	292, 504
Eco53kI	GAGCTC	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	4 cut(s)	202, 292, 338, 500
FaiI	YATR	8 cut(s)	131, 200, 290, 336, 417, 498, 558, 578
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	4 cut(s)	198, 288, 334, 496
Fnu4HI	GCNGC	3 cut(s)	286, 459, 564
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	3 cut(s)	286, 459, 564
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	3 cut(s)	286, 459, 564
HaeIII	GGCC	2 cut(s)	218, 650
HapII	CCGG	6 cut(s)	163, 219, 241, 319, 502, 652
HgaI	GACGC	3 cut(s)	135, 215, 455
HhaI	GCGC	1 cut(s)	309
Hin1I	GRCGYC	1 cut(s)	226
Hin1II	CATG	4 cut(s)	202, 292, 338, 500
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	4 cut(s)	168, 340, 511, 616
HpaII	CCGG	6 cut(s)	163, 219, 241, 319, 502, 652
HphI	GGTGA	1 cut(s)	598
Hpy188I	TCNGA	5 cut(s)	69, 151, 271, 355, 471
Hpy188III	TCNNGA	2 cut(s)	179, 497
Hpy99I	CGWCG	4 cut(s)	119, 151, 231, 471
HpyAV	CCTTC	4 cut(s)	56, 113, 367, 586
HpyCH4V	TGCA	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 472
HpyF3I	CTNAG	2 cut(s)	612, 638
Hsp92I	GRCGYC	1 cut(s)	226
Hsp92II	CATG	4 cut(s)	202, 292, 338, 500
HspAI	GCGC	1 cut(s)	307
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	2 cut(s)	470, 575
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	325
MboII	GAAGA	4 cut(s)	389, 407, 439, 460
MfeI	CAATTG	1 cut(s)	515
MhlI	GDGCHC	2 cut(s)	353, 634
MluCI	AATT	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	349
MmeI	TCCRAC	3 cut(s)	129, 249, 449
MnlI	CCTC	9 cut(s)	67, 145, 324, 420, 538, 546, 562, 633, 640
MseI	TTAA	2 cut(s)	276, 582
MslI	CAYNNNNRTG	3 cut(s)	69, 256, 640
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	6 cut(s)	163, 219, 241, 319, 502, 652
MspR9I	CCNGG	2 cut(s)	241, 652
MunI	CAATTG	1 cut(s)	515
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	42, 472
NciI	CCSGG	2 cut(s)	241, 652
NlaIII	CATG	4 cut(s)	202, 292, 338, 500
NlaIV	GGNNCC	2 cut(s)	135, 506
NmeAIII	GCCGAG	1 cut(s)	261
OliI	CACNNNNGTG	1 cut(s)	640
PagI	TCATGA	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	168, 511, 616
PflFI	GACNNNGTC	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	287, 460, 565
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	135, 506
PspPI	GGNCC	4 cut(s)	216, 292, 504, 649
PsyI	GACNNNGTC	1 cut(s)	225
RseI	CAYNNNNRTG	3 cut(s)	69, 256, 640
SacI	GAGCTC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	276, 582
SatI	GCNGC	3 cut(s)	286, 459, 564
Sau96I	GGNCC	4 cut(s)	216, 292, 504, 649
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	241, 652
SduI	GDGCHC	2 cut(s)	353, 634
SinI	GGWCC	2 cut(s)	292, 504
SmiMI	CAYNNNNRTG	3 cut(s)	69, 256, 640
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
SpeI	ACTAGT	1 cut(s)	313
Sse9I	AATT	1 cut(s)	515
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	353
StyD4I	CCNGG	2 cut(s)	239, 650
TaqI	TCGA	2 cut(s)	114, 347
TasI	AATT	1 cut(s)	515
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	3 cut(s)	168, 511, 616
Tru1I	TTAA	2 cut(s)	276, 582
Tru9I	TTAA	2 cut(s)	276, 582
TscAI	CASTG	3 cut(s)	36, 642, 676
TseI	GCWGC	2 cut(s)	458, 563
TspDTI	ATGAA	3 cut(s)	408, 485, 605
TspGWI	ACGGA	3 cut(s)	246, 398, 640
TspRI	CASTG	3 cut(s)	36, 642, 676
Tth111I	GACNNNGTC	1 cut(s)	225
Vha464I	CTTAAG	1 cut(s)	581
VpaK11BI	GGWCC	2 cut(s)	292, 504
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.