Rmu_co8202680.1_g000001

Amino acid kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8202680.1
OG0001779
Physical Location & Seq
Forward (+)
147 .. 714
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8202680.1_g000001.1.cds

Sequence Viewer

Length: 568 bp
atgagggtgctgaaaccaaccatggaagaatcagcatttgtctactcagaaacagctgaagtaccaatgctgacatcggacatagaaggagggacaaaagataagatggaatcaagagacaaggctagtatagaggacaaggcagcaaagatagagaggctgcggagtagcttcaggatttgcaagccacaaggaacatttctgtggccagacacgagtgcgtctccaaagggtgtggttcagcaaaccgactcttttttggtccccactccaccctcagtttcctcttccaacaagtcagcaacccgcctattccttcatacaccaaatgagcacaacctgggctcccctctgaagccattggctgagagacgtgcagtcaacataagcactttgagcaatgtgaccatgccacctgagaagacaaacccccagtcccagattgactctatcagcattggcaaaacccttaacatcaacctcaatgagttccctgatgcctacaacactgactctactgcaattcccgaggctctcacttaccagagaaagcatcaaaatgtgagta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
AA_kinase

Protein Analysis

189

Amino Acids

20.86

Weight (kDa)

6.84

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 42
AciI CCGC 2 cut(s) 163, 307
AcoI YGGCCR 1 cut(s) 206
AcuI CTGAAG 3 cut(s) 78, 157, 374
AfaI GTAC 1 cut(s) 63
AhdI GACNNNNNGTC 1 cut(s) 377
AjiI CACGTC 1 cut(s) 374
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 2 cut(s) 56, 171
AluI AGCT 2 cut(s) 56, 171
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 3 cut(s) 111, 228, 364
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 143, 160
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
AspS9I GGNCC 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 262
BalI TGGCCA 1 cut(s) 208
BanII GRGCYC 1 cut(s) 347
BauI CACGAG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 428
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 147, 155
BccI CCATC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 3 cut(s) 111, 228, 364
BfaI CTAG 1 cut(s) 126
BisI GCNGC 2 cut(s) 144, 161
BlsI GCNGC 2 cut(s) 145, 162
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 262
BmeRI GACNNNNNGTC 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 527
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 2 cut(s) 264, 346
BmrFI CCNGG 1 cut(s) 341
BmrI ACTGGG 1 cut(s) 427
BmsI GCATC 2 cut(s) 487, 562
BmuI ACTGGG 1 cut(s) 427
BpiI GAAGAC 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 208, 240
BsaJI CCNNGG 3 cut(s) 21, 340, 528
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bse1I ACTGG 1 cut(s) 433
Bse3DI GCAATG 1 cut(s) 406
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 3 cut(s) 21, 340, 528
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 4 cut(s) 60, 291, 357, 408
BseNI ACTGG 1 cut(s) 433
BseXI GCAGC 2 cut(s) 147, 155
BsgI GTGCAG 1 cut(s) 396
BshFI GGCC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 527
BslFI GGGAC 3 cut(s) 106, 248, 421
BsmAI GTCTC 3 cut(s) 111, 228, 364
BsmBI CGTCTC 2 cut(s) 228, 364
BsmFI GGGAC 3 cut(s) 106, 248, 421
BsnI GGCC 1 cut(s) 208
BsoBI CYCGRG 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 336, 347
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 163, 307
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 4 cut(s) 59, 290, 358, 409
BspLI GGNNCC 2 cut(s) 264, 346
BsrDI GCAATG 1 cut(s) 406
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 3 cut(s) 21, 340, 528
BssSI CACGAG 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 4 cut(s) 46, 277, 366, 417
BstDSI CCRYGG 1 cut(s) 21
BstMAI GTCTC 3 cut(s) 111, 228, 364
BstMWI GCNNNNNNNGC 1 cut(s) 396
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 147, 155
BstV2I GAAGAC 1 cut(s) 428
BsuRI GGCC 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 21
BtrI CACGTC 1 cut(s) 374
BtsIMutI CAGTG 1 cut(s) 507
Cac8I GCNNGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 62
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 2 cut(s) 22, 409
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 4 cut(s) 46, 277, 366, 417
DriI GACNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 292
Eam1105I GACNNNNNGTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 3 cut(s) 78, 157, 374
Eco88I CYCGRG 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 2 cut(s) 228, 364
FaeI CATG 2 cut(s) 25, 412
FaiI YATR 6 cut(s) 23, 83, 131, 321, 386, 410
FaqI GGGAC 3 cut(s) 106, 248, 421
FatI CATG 2 cut(s) 21, 408
FauI CCCGC 1 cut(s) 314
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 144, 161
FriOI GRGCYC 1 cut(s) 347
Fsp4HI GCNGC 2 cut(s) 144, 161
FspBI CTAG 1 cut(s) 126
GluI GCNGC 2 cut(s) 144, 161
HaeIII GGCC 1 cut(s) 208
HgaI GACGC 1 cut(s) 210
Hin1II CATG 2 cut(s) 25, 412
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 5 cut(s) 29, 110, 251, 446, 512
Hpy166II GTNNAC 2 cut(s) 43, 382
Hpy188I TCNGA 3 cut(s) 49, 79, 354
Hpy188III TCNNGA 3 cut(s) 114, 175, 527
Hpy8I GTNNAC 2 cut(s) 43, 382
HpyAV CCTTC 2 cut(s) 80, 326
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 3 cut(s) 183, 377, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 396
HpyF3I CTNAG 4 cut(s) 46, 277, 366, 417
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 2 cut(s) 25, 412
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 9 cut(s) 160, 222, 326, 353, 429, 446, 452, 507, 557
Lsp1109I GCAGC 2 cut(s) 147, 155
LweI GCATC 2 cut(s) 487, 562
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 403
MboII GAAGA 3 cut(s) 38, 279, 433
MhlI GDGCHC 2 cut(s) 336, 347
MlsI TGGCCA 1 cut(s) 208
MluCI AATT 1 cut(s) 522
MluNI TGGCCA 1 cut(s) 208
MlyI GAGTC 3 cut(s) 245, 440, 506
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 8 cut(s) 83, 127, 150, 286, 295, 360, 491, 523
Mox20I TGGCCA 1 cut(s) 208
MscI TGGCCA 1 cut(s) 208
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 2 cut(s) 202, 558
Msp20I TGGCCA 1 cut(s) 208
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 341
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 1 cut(s) 396
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 2 cut(s) 25, 412
NlaIV GGNNCC 2 cut(s) 264, 346
NmuCI GTSAC 1 cut(s) 403
PfeI GAWTC 2 cut(s) 29, 110
PkrI GCNGC 2 cut(s) 145, 162
PleI GAGTC 3 cut(s) 245, 440, 506
PpsI GAGTC 3 cut(s) 245, 440, 506
Psp6I CCWGG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 264, 346
PspPI GGNCC 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
RseI CAYNNNNRTG 2 cut(s) 202, 558
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 2 cut(s) 144, 161
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 3 cut(s) 245, 440, 506
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 2 cut(s) 336, 347
SetI ASST 6 cut(s) 58, 173, 342, 376, 418, 483
SfaNI GCATC 2 cut(s) 487, 562
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 2 cut(s) 202, 558
Sse9I AATT 1 cut(s) 522
SsiI CCGC 2 cut(s) 163, 307
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 21
TaiI ACGT 1 cut(s) 376
TasI AATT 1 cut(s) 522
TfiI GAWTC 2 cut(s) 29, 110
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 2 cut(s) 143, 160
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 1 cut(s) 308
TspRI CASTG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.