Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8298741.1

Orthogroup ID

OG0001779

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 804

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8298741.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 442 bp

gtacaaggcagtagaggagaacatactgaaggtgatgaaggcgaaaagtgcttgtgccgagaatccaattcagagagcaccactgaggtctgaggcccggaagttgataggggacactggtttggtggaccatttgttaaagcatatggctgggaaggtagctccgggtggcgctgatcggtttcggagaaggcataatgctgatggagcacttatgtattggctggagagtgctgagttgatgagtctaaggaaggaggctggggttgaggatccttattggactccaccccccgggtggaaggttggggataaccaaactcaggaccctacttgtgtgaggatgttcaaggagatttgggaagagatagccaatgtgaaaaggtacggtaatgggatcaattaccttgttattgttgaatctgtttggattgtagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0007049 GO:0008150 GO:0009987 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0051321

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.55

Weight (kDa)

7.94

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51330 AT5G51330
fragaria_vesca	FvH4_1g24020 FvH4_1g24020 FvH4_7g27150 FvH4_7g27150 FvH4_7g27150 FvH4_7g27150
malus_domestica	MD01G1180700.v1.1 MD07G1251100.v1.1
prunus_persica	Prupe.2G133400_v2.0.a1 Prupe.2G133400_v2.0.a1 Prupe.2G274700_v2.0.a1
pyrus_communis	pycom01g19090
rosa_chinensis	RchiOBHm_Chr1g0373991 RchiOBHm_Chr2g0120161
rosa_laevigata	RLG00000016013 RLG00000018527 RLG00000026788
rosa_multiflora	Rmu_co8084184.1_g000001 Rmu_co8202680.1_g000001 Rmu_co8293435.1_g000001 Rmu_co8298741.1_g000001 Rmu_sc0005304.1_g000004 Rmu_sc0008322.1_g000013 Rmu_sc0015468.1_g000001 Rmu_sc0015469.1_g000002 Rmu_sc0020978.1_g000001 Rmu_sc0020979.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123660 Rroxscaffold_4G00283840 Rroxscaffold_4G00283860
rosa_rugosa	Rorug01G0380000 Rorug01G0380100 Rorug02G0227300
rosa_samantha	Rh1AG390500 Rh1BG354600 Rh1CG367700 Rh1DG385300 Rh2AG283900 Rh2BG295200 Rh2CG272600 Rh2DG044200 Rh2DG308900
rosa_wichuraiana	Rw1G034470 Rw2G003810 Rw2G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	267, 280, 405
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	2 cut(s)	3, 387
AfiI	CCNNNNNNNGG	3 cut(s)	294, 298, 323
AgsI	TTSAA	2 cut(s)	350, 420
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw21I	GWGCWC	2 cut(s)	80, 212
AlwI	GGATC	3 cut(s)	267, 280, 405
Ama87I	CYCGRG	1 cut(s)	294
AoxI	GGCC	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	3 cut(s)	95, 128, 326
AsuC2I	CCSGG	4 cut(s)	98, 166, 295, 296
AsuHPI	GGTGA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	294
AvaII	GGWCC	2 cut(s)	128, 326
BamHI	GGATCC	1 cut(s)	272
Bbv12I	GWGCWC	2 cut(s)	80, 212
BccI	CCATC	1 cut(s)	198
BcnI	CCSGG	4 cut(s)	98, 166, 295, 296
BfoI	RGCGCY	1 cut(s)	175
Bme1390I	CCNGG	4 cut(s)	98, 166, 295, 296
Bme18I	GGWCC	2 cut(s)	128, 326
BmeT110I	CYCGRG	1 cut(s)	294
BmgT120I	GGNCC	3 cut(s)	95, 128, 326
BmiI	GGNNCC	2 cut(s)	274, 328
BmrFI	CCNGG	4 cut(s)	98, 166, 295, 296
BpmI	CTGGAG	1 cut(s)	246
BpuMI	CCSGG	4 cut(s)	98, 166, 295, 296
BsaJI	CCNNGG	2 cut(s)	293, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	294, 298, 323
Bse1I	ACTGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	293, 294
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	3 cut(s)	294, 298, 323
BseMII	CTCAG	4 cut(s)	75, 82, 226, 336
BseNI	ACTGG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	30
BseYI	CCCAGC	2 cut(s)	150, 261
BshFI	GGCC	1 cut(s)	96
BsiHKAI	GWGCWC	2 cut(s)	80, 212
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	3 cut(s)	98, 165, 295
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	3 cut(s)	294, 298, 323
BsmFI	GGGAC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	80, 212
Bsp143I	GATC	3 cut(s)	176, 272, 397
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	4 cut(s)	76, 83, 227, 335
BspLI	GGNNCC	2 cut(s)	274, 328
BspPI	GGATC	3 cut(s)	267, 280, 405
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	293, 294
BssMI	GATC	3 cut(s)	176, 272, 397
Bst4CI	ACNGT	1 cut(s)	390
Bst6I	CTCTTC	1 cut(s)	358
BstDEI	CTNAG	5 cut(s)	84, 91, 235, 249, 322
BstF5I	GGATG	1 cut(s)	349
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	3 cut(s)	179, 275, 400
BstMBI	GATC	3 cut(s)	176, 272, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 207
BstSCI	CCNGG	4 cut(s)	96, 164, 293, 294
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	2 cut(s)	81, 115
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	3 cut(s)	95, 128, 326
Cfr9I	CCCGGG	1 cut(s)	294
Csp6I	GTAC	2 cut(s)	2, 386
CviJI	RGCY	6 cut(s)	96, 150, 162, 224, 261, 372
CviKI_1	RGCY	6 cut(s)	96, 150, 162, 224, 261, 372
CviQI	GTAC	2 cut(s)	2, 386
DdeI	CTNAG	5 cut(s)	84, 91, 235, 249, 322
DpnI	GATC	3 cut(s)	178, 274, 399
DpnII	GATC	3 cut(s)	176, 272, 397
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco47I	GGWCC	2 cut(s)	128, 326
Eco57I	CTGAAG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	326
FaiI	YATR	5 cut(s)	24, 145, 147, 196, 216
FaqI	GGGAC	1 cut(s)	126
FauNDI	CATATG	1 cut(s)	145
FokI	GGATG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	173
GsaI	CCCAGC	2 cut(s)	154, 265
GsuI	CTGGAG	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	3 cut(s)	98, 165, 295
HhaI	GCGC	1 cut(s)	174
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HinfI	GANTC	4 cut(s)	62, 245, 284, 420
HpaII	CCGG	3 cut(s)	98, 165, 295
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	3 cut(s)	73, 92, 187
Hpy188III	TCNNGA	1 cut(s)	324
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	6 cut(s)	23, 32, 149, 184, 248, 296
HpyCH4III	ACNGT	1 cut(s)	390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 207
HpyF3I	CTNAG	5 cut(s)	84, 91, 235, 249, 322
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	176, 272, 397
LmnI	GCTCC	2 cut(s)	167, 207
LpnPI	CCDG	8 cut(s)	103, 111, 136, 178, 210, 247, 308, 309
MalI	GATC	3 cut(s)	178, 274, 399
MboI	GATC	3 cut(s)	176, 272, 397
MboII	GAAGA	1 cut(s)	375
MflI	RGATCY	1 cut(s)	272
MhlI	GDGCHC	2 cut(s)	80, 212
MluCI	AATT	2 cut(s)	67, 401
MlyI	GAGTC	2 cut(s)	254, 278
MnlI	CCTC	6 cut(s)	8, 79, 86, 251, 263, 334
MseI	TTAA	1 cut(s)	138
MspI	CCGG	3 cut(s)	98, 165, 295
MspR9I	CCNGG	4 cut(s)	98, 166, 295, 296
MwoI	GCNNNNNNNGC	2 cut(s)	48, 207
NciI	CCSGG	4 cut(s)	98, 166, 295, 296
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	3 cut(s)	176, 272, 397
NlaIV	GGNNCC	2 cut(s)	274, 328
NmeAIII	GCCGAG	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	62, 420
PleI	GAGTC	2 cut(s)	253, 278
PpsI	GAGTC	2 cut(s)	253, 278
PpuMI	RGGWCCY	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	326
PspFI	CCCAGC	2 cut(s)	150, 261
PspN4I	GGNNCC	2 cut(s)	274, 328
PspPI	GGNCC	3 cut(s)	95, 128, 326
PspPPI	RGGWCCY	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	272
RsaI	GTAC	2 cut(s)	3, 387
RsaNI	GTAC	2 cut(s)	2, 386
SaqAI	TTAA	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	176, 272, 397
Sau96I	GGNCC	3 cut(s)	95, 128, 326
SchI	GAGTC	2 cut(s)	254, 278
ScrFI	CCNGG	4 cut(s)	98, 166, 295, 296
SduI	GDGCHC	2 cut(s)	80, 212
SetI	ASST	7 cut(s)	34, 90, 160, 164, 307, 387, 409
SinI	GGWCC	2 cut(s)	128, 326
SmaI	CCCGGG	1 cut(s)	296
Sse9I	AATT	2 cut(s)	67, 401
StyD4I	CCNGG	4 cut(s)	96, 164, 293, 294
TaaI	ACNGT	1 cut(s)	390
TasI	AATT	2 cut(s)	67, 401
TfiI	GAWTC	2 cut(s)	62, 420
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	2 cut(s)	88, 122
TspDTI	ATGAA	1 cut(s)	51
TspMI	CCCGGG	1 cut(s)	294
TspRI	CASTG	2 cut(s)	88, 122
VpaK11BI	GGWCC	2 cut(s)	128, 326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmaI	CCCGGG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.