Rh2DG309000

Amino acid kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014351
Physical Location & Seq
Forward (+)
37831161 .. 37834510
3350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG309000.1

Sequence Viewer

Length: 1272 bp
ATGCGACGTCTTGAGATCCACTCTAGTATTGAAGTTTTAAGGGAACTTTACCAAGAGCCTCTCCTACAGAGTTCATCATCTCCGTTTCCCGCGGGAAAACGCTTTTCAACTGCAACATACGCGCCATTTTCAAATGGGGATAGAATTAAACGACAACAGGTAAAACAAAACCGACATGTCGTTAGTTTGTCAATATTCTTAACGTTATCCTATAATATATTGAATGAAACAGAGGCCTTGGCGCCGCTGCTGCGGAGGCTGCTTCATTTTCAGTTTTTAATGGCAATCTCCTCCTCCTCCTCTGTTCCTCTTCTATCTCTGAACACTGTCTCTTCTTCTTCTTCGTTTCCATTTTCTCTGAGTTGTGTGAGGCCTCAGAGCCGGAGAAATCAGCGCTTGGTGGTTAGCTGCTCGTCTTCTGAAACCGACTCCGGCTCTGACTCACTCAATGGAAATGGAAGACATTCCCAAATGTCGTCTATGACTCCTTTTGGGGTGACAATGAATGAAGCTGGGTTGTCCAGACCACCTTATAAATGGCGAAGGGTCTTGCTTAAAGTAAGCGGAGAAGCACTTGCCGGAGATCACACACAGAATATTGACCCAAAGGTAACAATGGAAATTGCAAGGGAGGTTGCATCTGTGACTCGCCTCGGCATTGAGGTTGCCATTGTTGTTGGTGGGGGAAATATATTCCGTGGAGCATCCTGGGCTGGAAGTAGTGGTCTTGACCGTTCATCCGCTGATTACATCGGGATGTTGGCTACTGTAATGAATTCAATATTTCTCCAAGCCACAATGGAGAGTATTGGTATCCCTACTCGGGTGCAGACTGCATTTAGGATGTCTGAGGTTGCAGAACCTTATATACGTCGAAGGGCTGTGAGGCATCTGGAAAAGGGCAGGGTAGTGATCTTTGCAGCAGGAACTGGAAATCCATTCTTTACAACAGATACTGCTGCAGCACTTCGTGGTGCAGAGATCAATGCAGAGGTGGTGCTGAAAGCTACAAATGTTGATGGAGTTTACGATGAGGATCCTAGGTGTAACCCAAATGCCTGTCTTCTTGATACTCTTACATATCAGGAGGTGACATCAAAAGATCTTTCAGTGATGGACATGACTGCTATTACTTTATGCCAGGAGAACAAAATTCCTGTTGTTGTGTTCAATCTAAACAAACCAGGTAACATCTCAAAAGCCATAAAGGGGGAGAAGGTTGGCACGTTAATTGGGGCAGCATGGAATTCCACAGTGGCGCCGAGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
AA_kinase

Protein Analysis

423

Amino Acids

46.11

Weight (kDa)

9.39

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_kinase PF00696 182 - 391 3.6e-36 Amino acid kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18680 AT3G18680
fragaria_vesca FvH4_1g24030
malus_domestica MD01G1011700.v1.1 MD15G1338200.v1.1
prunus_persica Prupe.6G157900_v2.0.a1 Prupe.6G157900_v2.0.a1
pyrus_communis pycom15g28830
rosa_chinensis RchiOBHm_Chr2g0120171
rosa_laevigata RLG00000018528
rosa_multiflora Rmu_sc0015469.1_g000003
rosa_roxburghii Rroxscaffold_2G00123650
rosa_rugosa Rorug02G0227300 Rorug02G0227400
rosa_samantha Rh2AG284000 Rh2DG309000
rosa_wichuraiana Rw2G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 534
AatII GACGTC 1 cut(s) 10
AccB1I GGYRCC 2 cut(s) 241, 1258
AccII CGCG 2 cut(s) 92, 122
AciI CCGC 6 cut(s) 90, 92, 245, 253, 564, 741
AclI AACGTT 1 cut(s) 203
AclWI GGATC 3 cut(s) 10, 1031, 1044
AcsI RAATTY 3 cut(s) 775, 1152, 1246
AcyI GRCGYC 3 cut(s) 7, 242, 1259
AdeI CACNNNGTG 1 cut(s) 971
AfeI AGCGCT 1 cut(s) 395
AfiI CCNNNNNNNGG 2 cut(s) 823, 1209
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 6 cut(s) 32, 108, 132, 223, 780, 1171
AjnI CCWGG 3 cut(s) 707, 1140, 1183
AloI GAACNNNNNNTCC 2 cut(s) 919, 951
AluBI AGCT 3 cut(s) 408, 512, 1007
AluI AGCT 3 cut(s) 408, 512, 1007
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 3 cut(s) 10, 1031, 1044
AlwNI CAGNNNCTG 2 cut(s) 929, 956
Ama87I CYCGRG 1 cut(s) 822
Aor51HI AGCGCT 1 cut(s) 395
AoxI GGCC 2 cut(s) 234, 371
ApeKI GCWGC 8 cut(s) 247, 250, 259, 408, 920, 959, 962, 1238
ApoI RAATTY 3 cut(s) 775, 1152, 1246
Asp700I GAANNNNTTC 1 cut(s) 463
AspA2I CCTAGG 1 cut(s) 1040
AspLEI GCGC 4 cut(s) 124, 244, 396, 1261
AsuHPI GGTGA 2 cut(s) 508, 1102
AvaI CYCGRG 1 cut(s) 822
AvrII CCTAGG 1 cut(s) 1040
BamHI GGATCC 1 cut(s) 1036
BanI GGYRCC 2 cut(s) 241, 1258
BbsI GAAGAC 3 cut(s) 408, 466, 1055
BbvI GCAGC 8 cut(s) 234, 237, 246, 395, 932, 946, 974, 1250
BccI CCATC 2 cut(s) 1013, 1108
BciT130I CCWGG 3 cut(s) 709, 1142, 1185
BciVI GTATCC 1 cut(s) 824
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 2 cut(s) 24, 1041
BfmI CTRYAG 2 cut(s) 65, 960
BfoI RGCGCY 3 cut(s) 245, 397, 1262
BfuI GTATCC 1 cut(s) 824
BglII AGATCT 1 cut(s) 1102
BisI GCNGC 9 cut(s) 245, 248, 251, 260, 409, 921, 960, 963, 1239
BlnI CCTAGG 1 cut(s) 1040
BlsI GCNGC 9 cut(s) 246, 249, 252, 261, 410, 922, 961, 964, 1240
Bme1390I CCNGG 3 cut(s) 709, 1142, 1185
BmeT110I CYCGRG 1 cut(s) 822
BmiI GGNNCC 3 cut(s) 243, 1038, 1260
BmrFI CCNGG 3 cut(s) 709, 1142, 1185
BmsI GCATC 3 cut(s) 647, 713, 898
BpiI GAAGAC 3 cut(s) 408, 466, 1055
BplI GAGNNNNNCTC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 1035
BsaHI GRCGYC 3 cut(s) 7, 242, 1259
BsaJI CCNNGG 6 cut(s) 90, 237, 652, 697, 708, 1040
Bsc4I CCNNNNNNNGG 2 cut(s) 823, 1209
Bse1I ACTGG 1 cut(s) 934
Bse8I GATNNNNATC 1 cut(s) 1035
BseBI CCWGG 3 cut(s) 709, 1142, 1185
BseDI CCNNGG 6 cut(s) 90, 237, 652, 697, 708, 1040
BseGI GGATG 4 cut(s) 704, 737, 762, 849
BseJI GATNNNNATC 1 cut(s) 1035
BseLI CCNNNNNNNGG 2 cut(s) 823, 1209
BseMII CTCAG 3 cut(s) 350, 389, 840
BseNI ACTGG 1 cut(s) 934
BseRI GAGGAG 4 cut(s) 280, 283, 286, 289
BseXI GCAGC 8 cut(s) 234, 237, 246, 395, 932, 946, 974, 1250
BseYI CCCAGC 1 cut(s) 512
BsgI GTGCAG 2 cut(s) 848, 996
Bsh1236I CGCG 2 cut(s) 92, 122
BshFI GGCC 2 cut(s) 236, 373
BshNI GGYRCC 2 cut(s) 241, 1258
BsiHKCI CYCGRG 1 cut(s) 822
BsiSI CCGG 3 cut(s) 382, 432, 579
BslI CCNNNNNNNGG 2 cut(s) 823, 1209
BsmAI GTCTC 1 cut(s) 334
BsnI GGCC 2 cut(s) 236, 373
BsoBI CYCGRG 1 cut(s) 822
Bsp143I GATC 6 cut(s) 15, 583, 912, 981, 1036, 1102
BspACI CCGC 6 cut(s) 90, 92, 245, 253, 564, 741
BspANI GGCC 2 cut(s) 236, 373
BspCNI CTCAG 3 cut(s) 351, 388, 841
BspFNI CGCG 2 cut(s) 92, 122
BspLI GGNNCC 3 cut(s) 243, 1038, 1260
BspMAI CTGCAG 1 cut(s) 964
BspPI GGATC 3 cut(s) 10, 1031, 1044
BspT107I GGYRCC 2 cut(s) 241, 1258
BsrI ACTGG 1 cut(s) 934
BssECI CCNNGG 6 cut(s) 90, 237, 652, 697, 708, 1040
BssMI GATC 6 cut(s) 15, 583, 912, 981, 1036, 1102
BssNI GRCGYC 3 cut(s) 7, 242, 1259
BssT1I CCWWGG 2 cut(s) 237, 1040
Bst2UI CCWGG 3 cut(s) 709, 1142, 1185
Bst4CI ACNGT 4 cut(s) 328, 734, 769, 1255
Bst6I CTCTTC 2 cut(s) 315, 337
BstACI GRCGYC 3 cut(s) 7, 242, 1259
BstDEI CTNAG 3 cut(s) 359, 375, 849
BstDSI CCRYGG 2 cut(s) 90, 697
BstF5I GGATG 4 cut(s) 704, 737, 762, 849
BstFNI CGCG 2 cut(s) 92, 122
BstH2I RGCGCY 3 cut(s) 245, 397, 1262
BstHHI GCGC 4 cut(s) 124, 244, 396, 1261
BstKTI GATC 6 cut(s) 18, 586, 915, 984, 1039, 1105
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 6 cut(s) 15, 583, 912, 981, 1036, 1102
BstMWI GCNNNNNNNGC 5 cut(s) 119, 250, 256, 259, 710
BstNI CCWGG 3 cut(s) 709, 1142, 1185
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 3 cut(s) 707, 1140, 1183
BstSFI CTRYAG 2 cut(s) 65, 960
BstUI CGCG 2 cut(s) 92, 122
BstV1I GCAGC 8 cut(s) 234, 237, 246, 395, 932, 946, 974, 1250
BstV2I GAAGAC 3 cut(s) 408, 466, 1055
BstX2I RGATCY 3 cut(s) 15, 1036, 1102
BstYI RGATCY 3 cut(s) 15, 1036, 1102
BsuI GTATCC 1 cut(s) 824
BsuRI GGCC 2 cut(s) 236, 373
BtgI CCRYGG 2 cut(s) 90, 697
BtsCI GGATG 4 cut(s) 704, 737, 762, 849
BtsIMutI CAGTG 3 cut(s) 324, 1116, 1260
CaiI CAGNNNCTG 2 cut(s) 929, 956
CfoI GCGC 4 cut(s) 124, 244, 396, 1261
Cfr42I CCGCGG 1 cut(s) 93
CsiI ACCWGGT 1 cut(s) 1183
CviAII CATG 4 cut(s) 176, 1120, 1242, 1269
DdeI CTNAG 3 cut(s) 359, 375, 849
DinI GGCGCC 2 cut(s) 243, 1260
DpnI GATC 6 cut(s) 17, 585, 914, 983, 1038, 1104
DpnII GATC 6 cut(s) 15, 583, 912, 981, 1036, 1102
DraIII CACNNNGTG 1 cut(s) 971
Eam1104I CTCTTC 2 cut(s) 315, 337
EarI CTCTTC 2 cut(s) 315, 337
Eco130I CCWWGG 2 cut(s) 237, 1040
Eco147I AGGCCT 2 cut(s) 236, 373
Eco47III AGCGCT 1 cut(s) 395
Eco88I CYCGRG 1 cut(s) 822
EcoRI GAATTC 2 cut(s) 775, 1246
EcoRII CCWGG 3 cut(s) 707, 1140, 1183
EcoT14I CCWWGG 2 cut(s) 237, 1040
EgeI GGCGCC 2 cut(s) 243, 1260
EheI GGCGCC 2 cut(s) 243, 1260
ErhI CCWWGG 2 cut(s) 237, 1040
FaeI CATG 4 cut(s) 179, 1123, 1245, 1272
FatI CATG 4 cut(s) 175, 1119, 1241, 1268
FauI CCCGC 2 cut(s) 85, 97
Fnu4HI GCNGC 9 cut(s) 245, 248, 251, 260, 409, 921, 960, 963, 1239
FokI GGATG 4 cut(s) 691, 724, 769, 856
Fsp4HI GCNGC 9 cut(s) 245, 248, 251, 260, 409, 921, 960, 963, 1239
FspBI CTAG 2 cut(s) 24, 1041
GlaI GCGC 4 cut(s) 123, 243, 395, 1260
GluI GCNGC 9 cut(s) 245, 248, 251, 260, 409, 921, 960, 963, 1239
GsaI CCCAGC 1 cut(s) 516
HaeII RGCGCY 3 cut(s) 245, 397, 1262
HaeIII GGCC 2 cut(s) 236, 373
HapII CCGG 3 cut(s) 382, 432, 579
HhaI GCGC 4 cut(s) 124, 244, 396, 1261
Hin1I GRCGYC 3 cut(s) 7, 242, 1259
Hin1II CATG 4 cut(s) 179, 1123, 1245, 1272
Hin6I GCGC 4 cut(s) 122, 242, 394, 1259
HinP1I GCGC 4 cut(s) 122, 242, 394, 1259
HinfI GANTC 4 cut(s) 428, 440, 484, 646
HpaII CCGG 3 cut(s) 382, 432, 579
HphI GGTGA 2 cut(s) 508, 1102
Hpy166II GTNNAC 1 cut(s) 1027
Hpy188I TCNGA 6 cut(s) 321, 360, 378, 421, 439, 850
Hpy188III TCNNGA 7 cut(s) 11, 522, 728, 754, 893, 1067, 1085
Hpy8I GTNNAC 1 cut(s) 1027
Hpy99I CGWCG 2 cut(s) 9, 876
HpyAV CCTTC 3 cut(s) 537, 870, 1210
HpyCH4III ACNGT 4 cut(s) 328, 734, 769, 1255
HpyCH4IV ACGT 4 cut(s) 7, 203, 871, 1226
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 250, 256, 259, 710
HpyF3I CTNAG 3 cut(s) 359, 375, 849
HpySE526I ACGT 4 cut(s) 7, 203, 871, 1226
Hsp92I GRCGYC 3 cut(s) 7, 242, 1259
Hsp92II CATG 4 cut(s) 179, 1123, 1245, 1272
HspAI GCGC 4 cut(s) 122, 242, 394, 1259
KasI GGCGCC 2 cut(s) 241, 1258
KspI CCGCGG 1 cut(s) 93
Kzo9I GATC 6 cut(s) 15, 583, 912, 981, 1036, 1102
LmnI GCTCC 1 cut(s) 701
Lsp1109I GCAGC 8 cut(s) 234, 237, 246, 395, 932, 946, 974, 1250
LweI GCATC 3 cut(s) 647, 713, 898
MabI ACCWGGT 1 cut(s) 1183
MaeI CTAG 2 cut(s) 24, 1041
MaeII ACGT 4 cut(s) 7, 203, 871, 1226
MaeIII GTNAC 6 cut(s) 496, 610, 643, 1046, 1090, 1187
MalI GATC 6 cut(s) 17, 585, 914, 983, 1038, 1104
MboI GATC 6 cut(s) 15, 583, 912, 981, 1036, 1102
MboII GAAGA 8 cut(s) 302, 324, 327, 330, 333, 408, 471, 1055
MflI RGATCY 3 cut(s) 15, 1036, 1102
MluCI AATT 6 cut(s) 144, 621, 775, 1152, 1230, 1246
Mly113I GGCGCC 2 cut(s) 242, 1259
MlyI GAGTC 4 cut(s) 422, 434, 478, 640
MroXI GAANNNNTTC 1 cut(s) 463
MseI TTAA 6 cut(s) 38, 147, 200, 278, 555, 1229
MslI CAYNNNNRTG 1 cut(s) 755
MspA1I CMGCKG 3 cut(s) 92, 247, 743
MspI CCGG 3 cut(s) 382, 432, 579
MspR9I CCNGG 3 cut(s) 709, 1142, 1185
MvaI CCWGG 3 cut(s) 709, 1142, 1185
MvnI CGCG 2 cut(s) 92, 122
MwoI GCNNNNNNNGC 5 cut(s) 119, 250, 256, 259, 710
NarI GGCGCC 2 cut(s) 242, 1259
NdeII GATC 6 cut(s) 15, 583, 912, 981, 1036, 1102
NlaIII CATG 4 cut(s) 179, 1123, 1245, 1272
NlaIV GGNNCC 3 cut(s) 243, 1038, 1260
NmeAIII GCCGAG 1 cut(s) 633
NmuCI GTSAC 3 cut(s) 496, 643, 1090
NspI RCATGY 1 cut(s) 179
PceI AGGCCT 2 cut(s) 236, 373
PciI ACATGT 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 463
PkrI GCNGC 9 cut(s) 246, 249, 252, 261, 410, 922, 961, 964, 1240
PleI GAGTC 4 cut(s) 422, 434, 478, 640
PluTI GGCGCC 2 cut(s) 245, 1262
PpsI GAGTC 4 cut(s) 422, 434, 478, 640
PscI ACATGT 1 cut(s) 175
PsiI TTATAA 1 cut(s) 534
Psp1406I AACGTT 1 cut(s) 203
Psp6I CCWGG 3 cut(s) 707, 1140, 1183
PspFI CCCAGC 1 cut(s) 512
PspGI CCWGG 3 cut(s) 707, 1140, 1183
PspN4I GGNNCC 3 cut(s) 243, 1038, 1260
PsrI GAACNNNNNNTAC 2 cut(s) 852, 884
PstI CTGCAG 1 cut(s) 964
PstNI CAGNNNCTG 2 cut(s) 929, 956
PsuI RGATCY 3 cut(s) 15, 1036, 1102
RseI CAYNNNNRTG 1 cut(s) 755
SacII CCGCGG 1 cut(s) 93
SaqAI TTAA 6 cut(s) 38, 147, 200, 278, 555, 1229
SatI GCNGC 9 cut(s) 245, 248, 251, 260, 409, 921, 960, 963, 1239
Sau3AI GATC 6 cut(s) 15, 583, 912, 981, 1036, 1102
SchI GAGTC 4 cut(s) 422, 434, 478, 640
ScrFI CCNGG 3 cut(s) 709, 1142, 1185
SexAI ACCWGGT 1 cut(s) 1183
SfaNI GCATC 3 cut(s) 647, 713, 898
SfcI CTRYAG 2 cut(s) 65, 960
SfoI GGCGCC 2 cut(s) 243, 1260
Sfr303I CCGCGG 1 cut(s) 93
SgrBI CCGCGG 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 6 cut(s) 144, 621, 775, 1152, 1230, 1246
SseBI AGGCCT 2 cut(s) 236, 373
SsiI CCGC 6 cut(s) 90, 92, 245, 253, 564, 741
SspDI GGCGCC 2 cut(s) 241, 1258
SspI AATATT 3 cut(s) 195, 598, 783
SspMI CTAG 2 cut(s) 24, 1041
StuI AGGCCT 2 cut(s) 236, 373
StyD4I CCNGG 3 cut(s) 707, 1140, 1183
StyI CCWWGG 2 cut(s) 237, 1040
TaaI ACNGT 4 cut(s) 328, 734, 769, 1255
TaiI ACGT 4 cut(s) 10, 206, 874, 1229
TaqI TCGA 1 cut(s) 874
TasI AATT 6 cut(s) 144, 621, 775, 1152, 1230, 1246
TauI GCSGC 1 cut(s) 247
Tru1I TTAA 6 cut(s) 38, 147, 200, 278, 555, 1229
Tru9I TTAA 6 cut(s) 38, 147, 200, 278, 555, 1229
TscAI CASTG 3 cut(s) 331, 1116, 1260
TseFI GTSAC 3 cut(s) 496, 643, 1090
TseI GCWGC 8 cut(s) 247, 250, 259, 408, 920, 959, 962, 1238
Tsp45I GTSAC 3 cut(s) 496, 643, 1090
TspDTI ATGAA 7 cut(s) 63, 240, 254, 518, 522, 726, 788
TspGWI ACGGA 2 cut(s) 72, 686
TspRI CASTG 3 cut(s) 331, 1116, 1260
XapI RAATTY 3 cut(s) 775, 1152, 1246
XceI RCATGY 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XmaJI CCTAGG 1 cut(s) 1040
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 2 cut(s) 24, 1041
ZraI GACGTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.