RchiOBHm_Chr2g0120171

Amino acid kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014351
Physical Location & Seq
Forward (+)
32877162 .. 32880622
3461 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49282

Sequence Viewer

Length: 993 bp
ATGGCAATCTCCTCCTCCTCCTCTGTTCCTCTTCTATCTCTGAACACTGTCTCTTCTTCTTCTTCGTTTCCATTTTCTCTGAGTTGTGTGAGGCCTCAGAGCCGGAGAAATCAGCGCTTGGTGGTTAGCTGCTCGTCTTCTGAAACCGACTCCGGCTCTGACTCACTCAATGGAAATGGAAGACATTCCCAAATGTCGTCTATGACTCCTTTTGGGGTGACAATGAATGAAGCTGGGTTGTCCAGACCACCTTATAAATGGCGAAGGGTCTTGCTTAAAGTAAGCGGAGAAGCACTTGCCGGAGATCACACACAGAATATTGACCCAAAGGTAACAATGGAAATTGCAAGGGAGGTTGCATCTGTGACTCGCCTCGGCATTGAGGTTGCCATTGTTGTTGGTGGGGGAAATATATTCCGTGGAGCATCCTGGGCTGGAAGTAGTGGTCTTGACCGTTCATCCGCTGATTACATCGGGATGTTGGCTACTGTAATGAATTCAATATTTCTCCAAGCCACAATGGAGAGTATTGGTATCCCTACTCGGGTGCAGACTGCATTTAGGATGTCTGAGGTTGCAGAACCTTATATACGTCGAAGGGCTGTGAGGCATCTGGAAAAGGGCAGGGTAGTGATCTTTGCAGCAGGAACTGGAAATCCATTCTTTACAACAGATACTGCTGCAGCACTTCGTGGTGCAGAGATCAATGCAGAGGTGGTGCTGAAAGCTACAAATGTTGATGGAGTTTACGATGAGGATCCTAGGTGTAACCCAAATGCCTGTCTTCTTGATACTCTTACATATCAGGAGGTGACATCAAAAGATCTTTCAGTGATGGACATGACTGCTATTACTTTATGCCAGGAGAACAAAATTCCTGTTGTTGTGTTCAATCTAAACAAACCAGGTAACATCTCAAAAGCCATAAAGGGGGAGAAGGTTGGCACGTTAATTGGGGCAGCATGGAATTCCACAGTGGCGCCGAGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
AA_kinase

Protein Analysis

330

Amino Acids

35.31

Weight (kDa)

8.82

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_kinase PF00696 89 - 298 1.9e-36 Amino acid kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014351)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18680 AT3G18680
fragaria_vesca FvH4_1g24030
malus_domestica MD01G1011700.v1.1 MD15G1338200.v1.1
prunus_persica Prupe.6G157900_v2.0.a1 Prupe.6G157900_v2.0.a1
pyrus_communis pycom15g28830
rosa_chinensis RchiOBHm_Chr2g0120171
rosa_laevigata RLG00000018528
rosa_multiflora Rmu_sc0015469.1_g000003
rosa_roxburghii Rroxscaffold_2G00123650
rosa_rugosa Rorug02G0227300 Rorug02G0227400
rosa_samantha Rh2AG284000 Rh2DG309000
rosa_wichuraiana Rw2G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 979
AciI CCGC 2 cut(s) 285, 462
AclWI GGATC 2 cut(s) 752, 765
AcsI RAATTY 3 cut(s) 496, 873, 967
AcyI GRCGYC 1 cut(s) 980
AdeI CACNNNGTG 1 cut(s) 692
AfeI AGCGCT 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 544, 930
AgsI TTSAA 2 cut(s) 501, 892
AjnI CCWGG 3 cut(s) 428, 861, 904
AloI GAACNNNNNNTCC 2 cut(s) 640, 672
AluBI AGCT 3 cut(s) 129, 233, 728
AluI AGCT 3 cut(s) 129, 233, 728
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 2 cut(s) 752, 765
AlwNI CAGNNNCTG 2 cut(s) 650, 677
Ama87I CYCGRG 1 cut(s) 543
Aor51HI AGCGCT 1 cut(s) 116
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 5 cut(s) 129, 641, 680, 683, 959
ApoI RAATTY 3 cut(s) 496, 873, 967
Asp700I GAANNNNTTC 1 cut(s) 184
AspA2I CCTAGG 1 cut(s) 761
AspLEI GCGC 2 cut(s) 117, 982
AsuHPI GGTGA 2 cut(s) 229, 823
AvaI CYCGRG 1 cut(s) 543
AvrII CCTAGG 1 cut(s) 761
BamHI GGATCC 1 cut(s) 757
BanI GGYRCC 1 cut(s) 979
BbsI GAAGAC 3 cut(s) 129, 187, 776
BbvI GCAGC 5 cut(s) 116, 653, 667, 695, 971
BccI CCATC 2 cut(s) 734, 829
BciT130I CCWGG 3 cut(s) 430, 863, 906
BciVI GTATCC 1 cut(s) 545
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 762
BfmI CTRYAG 1 cut(s) 681
BfoI RGCGCY 2 cut(s) 118, 983
BfuI GTATCC 1 cut(s) 545
BglII AGATCT 1 cut(s) 823
BisI GCNGC 5 cut(s) 130, 642, 681, 684, 960
BlnI CCTAGG 1 cut(s) 761
BlsI GCNGC 5 cut(s) 131, 643, 682, 685, 961
Bme1390I CCNGG 3 cut(s) 430, 863, 906
BmeT110I CYCGRG 1 cut(s) 543
BmiI GGNNCC 2 cut(s) 759, 981
BmrFI CCNGG 3 cut(s) 430, 863, 906
BmsI GCATC 3 cut(s) 368, 434, 619
BpiI GAAGAC 3 cut(s) 129, 187, 776
BsaBI GATNNNNATC 1 cut(s) 756
BsaHI GRCGYC 1 cut(s) 980
BsaJI CCNNGG 4 cut(s) 373, 418, 429, 761
Bsc4I CCNNNNNNNGG 2 cut(s) 544, 930
Bse1I ACTGG 1 cut(s) 655
Bse8I GATNNNNATC 1 cut(s) 756
BseBI CCWGG 3 cut(s) 430, 863, 906
BseDI CCNNGG 4 cut(s) 373, 418, 429, 761
BseGI GGATG 4 cut(s) 425, 458, 483, 570
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 2 cut(s) 544, 930
BseMII CTCAG 3 cut(s) 71, 110, 561
BseNI ACTGG 1 cut(s) 655
BseRI GAGGAG 3 cut(s) 4, 7, 10
BseXI GCAGC 5 cut(s) 116, 653, 667, 695, 971
BseYI CCCAGC 1 cut(s) 233
BsgI GTGCAG 2 cut(s) 569, 717
BshFI GGCC 1 cut(s) 94
BshNI GGYRCC 1 cut(s) 979
BsiHKCI CYCGRG 1 cut(s) 543
BsiSI CCGG 3 cut(s) 103, 153, 300
BslI CCNNNNNNNGG 2 cut(s) 544, 930
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 543
Bsp143I GATC 5 cut(s) 304, 633, 702, 757, 823
BspACI CCGC 2 cut(s) 285, 462
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 3 cut(s) 72, 109, 562
BspLI GGNNCC 2 cut(s) 759, 981
BspMAI CTGCAG 1 cut(s) 685
BspPI GGATC 2 cut(s) 752, 765
BspT107I GGYRCC 1 cut(s) 979
BsrI ACTGG 1 cut(s) 655
BssECI CCNNGG 4 cut(s) 373, 418, 429, 761
BssMI GATC 5 cut(s) 304, 633, 702, 757, 823
BssNI GRCGYC 1 cut(s) 980
BssT1I CCWWGG 1 cut(s) 761
Bst2UI CCWGG 3 cut(s) 430, 863, 906
Bst4CI ACNGT 4 cut(s) 49, 455, 490, 976
Bst6I CTCTTC 2 cut(s) 36, 58
BstACI GRCGYC 1 cut(s) 980
BstDEI CTNAG 3 cut(s) 80, 96, 570
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 4 cut(s) 425, 458, 483, 570
BstH2I RGCGCY 2 cut(s) 118, 983
BstHHI GCGC 2 cut(s) 117, 982
BstKTI GATC 5 cut(s) 307, 636, 705, 760, 826
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 5 cut(s) 304, 633, 702, 757, 823
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 3 cut(s) 430, 863, 906
BstSCI CCNGG 3 cut(s) 428, 861, 904
BstSFI CTRYAG 1 cut(s) 681
BstV1I GCAGC 5 cut(s) 116, 653, 667, 695, 971
BstV2I GAAGAC 3 cut(s) 129, 187, 776
BstX2I RGATCY 2 cut(s) 757, 823
BstYI RGATCY 2 cut(s) 757, 823
BsuI GTATCC 1 cut(s) 545
BsuRI GGCC 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 4 cut(s) 425, 458, 483, 570
BtsIMutI CAGTG 3 cut(s) 45, 837, 981
CaiI CAGNNNCTG 2 cut(s) 650, 677
CfoI GCGC 2 cut(s) 117, 982
CsiI ACCWGGT 1 cut(s) 904
CviAII CATG 3 cut(s) 841, 963, 990
DdeI CTNAG 3 cut(s) 80, 96, 570
DinI GGCGCC 1 cut(s) 981
DpnI GATC 5 cut(s) 306, 635, 704, 759, 825
DpnII GATC 5 cut(s) 304, 633, 702, 757, 823
DraIII CACNNNGTG 1 cut(s) 692
Eam1104I CTCTTC 2 cut(s) 36, 58
EarI CTCTTC 2 cut(s) 36, 58
Eco130I CCWWGG 1 cut(s) 761
Eco147I AGGCCT 1 cut(s) 94
Eco47III AGCGCT 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 543
EcoRI GAATTC 2 cut(s) 496, 967
EcoRII CCWGG 3 cut(s) 428, 861, 904
EcoT14I CCWWGG 1 cut(s) 761
EgeI GGCGCC 1 cut(s) 981
EheI GGCGCC 1 cut(s) 981
ErhI CCWWGG 1 cut(s) 761
FaeI CATG 3 cut(s) 844, 966, 993
FatI CATG 3 cut(s) 840, 962, 989
Fnu4HI GCNGC 5 cut(s) 130, 642, 681, 684, 960
FokI GGATG 4 cut(s) 412, 445, 490, 577
Fsp4HI GCNGC 5 cut(s) 130, 642, 681, 684, 960
FspBI CTAG 1 cut(s) 762
GlaI GCGC 2 cut(s) 116, 981
GluI GCNGC 5 cut(s) 130, 642, 681, 684, 960
GsaI CCCAGC 1 cut(s) 237
HaeII RGCGCY 2 cut(s) 118, 983
HaeIII GGCC 1 cut(s) 94
HapII CCGG 3 cut(s) 103, 153, 300
HhaI GCGC 2 cut(s) 117, 982
Hin1I GRCGYC 1 cut(s) 980
Hin1II CATG 3 cut(s) 844, 966, 993
Hin6I GCGC 2 cut(s) 115, 980
HinP1I GCGC 2 cut(s) 115, 980
HinfI GANTC 4 cut(s) 149, 161, 205, 367
HpaII CCGG 3 cut(s) 103, 153, 300
HphI GGTGA 2 cut(s) 229, 823
Hpy166II GTNNAC 1 cut(s) 748
Hpy188I TCNGA 6 cut(s) 42, 81, 99, 142, 160, 571
Hpy188III TCNNGA 6 cut(s) 243, 449, 475, 614, 788, 806
Hpy8I GTNNAC 1 cut(s) 748
Hpy99I CGWCG 1 cut(s) 597
HpyAV CCTTC 3 cut(s) 258, 591, 931
HpyCH4III ACNGT 4 cut(s) 49, 455, 490, 976
HpyCH4IV ACGT 2 cut(s) 592, 947
HpyCH4V TGCA 9 cut(s) 347, 359, 550, 557, 578, 641, 683, 698, 710
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 3 cut(s) 80, 96, 570
HpySE526I ACGT 2 cut(s) 592, 947
Hsp92I GRCGYC 1 cut(s) 980
Hsp92II CATG 3 cut(s) 844, 966, 993
HspAI GCGC 2 cut(s) 115, 980
KasI GGCGCC 1 cut(s) 979
Kzo9I GATC 5 cut(s) 304, 633, 702, 757, 823
LmnI GCTCC 1 cut(s) 422
Lsp1109I GCAGC 5 cut(s) 116, 653, 667, 695, 971
LweI GCATC 3 cut(s) 368, 434, 619
MabI ACCWGGT 1 cut(s) 904
MaeI CTAG 1 cut(s) 762
MaeII ACGT 2 cut(s) 592, 947
MaeIII GTNAC 6 cut(s) 217, 331, 364, 767, 811, 908
MalI GATC 5 cut(s) 306, 635, 704, 759, 825
MboI GATC 5 cut(s) 304, 633, 702, 757, 823
MboII GAAGA 8 cut(s) 23, 45, 48, 51, 54, 129, 192, 776
MflI RGATCY 2 cut(s) 757, 823
MluCI AATT 5 cut(s) 342, 496, 873, 951, 967
Mly113I GGCGCC 1 cut(s) 980
MlyI GAGTC 4 cut(s) 143, 155, 199, 361
MroXI GAANNNNTTC 1 cut(s) 184
MseI TTAA 2 cut(s) 276, 950
MslI CAYNNNNRTG 1 cut(s) 476
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 3 cut(s) 103, 153, 300
MspR9I CCNGG 3 cut(s) 430, 863, 906
MvaI CCWGG 3 cut(s) 430, 863, 906
MwoI GCNNNNNNNGC 1 cut(s) 431
NarI GGCGCC 1 cut(s) 980
NdeII GATC 5 cut(s) 304, 633, 702, 757, 823
NlaIII CATG 3 cut(s) 844, 966, 993
NlaIV GGNNCC 2 cut(s) 759, 981
NmeAIII GCCGAG 1 cut(s) 354
NmuCI GTSAC 3 cut(s) 217, 364, 811
PceI AGGCCT 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 184
PkrI GCNGC 5 cut(s) 131, 643, 682, 685, 961
PleI GAGTC 4 cut(s) 143, 155, 199, 361
PluTI GGCGCC 1 cut(s) 983
PpsI GAGTC 4 cut(s) 143, 155, 199, 361
PsiI TTATAA 1 cut(s) 255
Psp6I CCWGG 3 cut(s) 428, 861, 904
PspFI CCCAGC 1 cut(s) 233
PspGI CCWGG 3 cut(s) 428, 861, 904
PspN4I GGNNCC 2 cut(s) 759, 981
PsrI GAACNNNNNNTAC 2 cut(s) 573, 605
PstI CTGCAG 1 cut(s) 685
PstNI CAGNNNCTG 2 cut(s) 650, 677
PsuI RGATCY 2 cut(s) 757, 823
RseI CAYNNNNRTG 1 cut(s) 476
SaqAI TTAA 2 cut(s) 276, 950
SatI GCNGC 5 cut(s) 130, 642, 681, 684, 960
Sau3AI GATC 5 cut(s) 304, 633, 702, 757, 823
SchI GAGTC 4 cut(s) 143, 155, 199, 361
ScrFI CCNGG 3 cut(s) 430, 863, 906
SexAI ACCWGGT 1 cut(s) 904
SfaNI GCATC 3 cut(s) 368, 434, 619
SfcI CTRYAG 1 cut(s) 681
SfoI GGCGCC 1 cut(s) 981
SmiMI CAYNNNNRTG 1 cut(s) 476
Sse9I AATT 5 cut(s) 342, 496, 873, 951, 967
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 2 cut(s) 285, 462
SspDI GGCGCC 1 cut(s) 979
SspI AATATT 2 cut(s) 319, 504
SspMI CTAG 1 cut(s) 762
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 3 cut(s) 428, 861, 904
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 4 cut(s) 49, 455, 490, 976
TaiI ACGT 2 cut(s) 595, 950
TaqI TCGA 1 cut(s) 595
TasI AATT 5 cut(s) 342, 496, 873, 951, 967
Tru1I TTAA 2 cut(s) 276, 950
Tru9I TTAA 2 cut(s) 276, 950
TscAI CASTG 3 cut(s) 52, 837, 981
TseFI GTSAC 3 cut(s) 217, 364, 811
TseI GCWGC 5 cut(s) 129, 641, 680, 683, 959
Tsp45I GTSAC 3 cut(s) 217, 364, 811
TspDTI ATGAA 4 cut(s) 239, 243, 447, 509
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 3 cut(s) 52, 837, 981
XapI RAATTY 3 cut(s) 496, 873, 967
XcmI CCANNNNNNNNNTGG 1 cut(s) 255
XmaJI CCTAGG 1 cut(s) 761
XmnI GAANNNNTTC 1 cut(s) 184
XspI CTAG 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.